Publications by authors named "Zuoshuang Xiang"

40Publications

Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Nucleic Acids Res 2019 01;47(D1):D693-D700

Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, and Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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January 2019

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.

J Biomed Semantics 2018 01 12;9(1). Epub 2018 Jan 12.

Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.

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January 2018

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events.

J Biomed Semantics 2016 21;7:29. Epub 2016 May 21.

University of Michigan Medical School, Ann Arbor, MI 48109 USA ; Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, and Comprehensive Cancer Center, University of Michigan Medical School, 1301 MSRB III, 1150 W. Medical Dr., Ann Arbor, MI 48109 USA.

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November 2017

Vaxar: A Web-Based Database of Laboratory Animal Responses to Vaccinations and Its Application in the Meta-Analysis of Different Animal Responses to Tuberculosis Vaccinations.

Comp Med 2016 Apr;66(2):119-28

Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology,Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan, USA.

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April 2016

Ontology-based representation and analysis of host-Brucella interactions.

J Biomed Semantics 2015 5;6:37. Epub 2015 Oct 5.

Unit of Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, and Comprehensive Cancer Center, University of Michigan Medical School, 1150 W. Medical Center Dr, Ann Arbor, MI 48109 USA.

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October 2015

Vaxvec: The first web-based recombinant vaccine vector database and its data analysis.

Vaccine 2015 Nov 25;33(48):6938-46. Epub 2015 Sep 25.

Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI 48109, USA; Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address:

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November 2015

RNA-seq reveals the critical role of OtpR in regulating Brucella melitensis metabolism and virulence under acidic stress.

Sci Rep 2015 Aug 5;5:10864. Epub 2015 Aug 5.

Key Laboratory of Animal Epidemiology and Zoonosis of Ministry of Agriculture, College of Veterinary Medicine, China Agricultural University, Beijing 100193, People's Republic of China.

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August 2015

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.

J Biomed Semantics 2015 6;6. Epub 2015 Jan 6.

Unit for Laboratory Animal Medicine, University of Michigan, Ann Arbor, MI 48109 USA ; Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109 USA ; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109 USA ; Comprehensive Cancer Center, University of Michigan, Ann Arbor, MI 48109 USA.

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March 2015

Ontodog: a web-based ontology community view generation tool.

Bioinformatics 2014 May 9;30(9):1340-2. Epub 2014 Jan 9.

Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104 and Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.

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May 2014

Updates on the web-based VIOLIN vaccine database and analysis system.

Nucleic Acids Res 2014 Jan 19;42(Database issue):D1124-32. Epub 2013 Nov 19.

Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA, Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA, Center for Computational Medicine and Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA, Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA, College of Pharmacy, University of Michigan, Ann Arbor, MI 48109, USA, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA, Division of Comparative Medicine, University of South Florida, Tampa, FL 33612, USA, Department of Neurology, University of Michigan, 48109, Ann Arbor, MI, USA, College of Literature, Science, and the Arts, University of Michigan, Ann Arbor, MI 48109, USA, Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA and Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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January 2014

Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates.

BMC Bioinformatics 2013 17;14 Suppl 6:S3. Epub 2013 Apr 17.

Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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September 2013

Databases and in silico tools for vaccine design.

Methods Mol Biol 2013 ;993:115-27

Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.

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September 2013

Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology.

BMC Bioinformatics 2013 8;14 Suppl 4:S2. Epub 2013 Mar 8.

Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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July 2013