Vladimir Vacic

Vladimir Vacic

UNVERIFIED PROFILE

Are you Vladimir Vacic?   Register this Author

Register author
Vladimir Vacic

Vladimir Vacic

Publications by authors named "Vladimir Vacic"

Are you Vladimir Vacic?   Register this Author

38Publications

1110Reads

37Profile Views

Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.

Nat Commun 2018 03 21;9(1):1178. Epub 2018 Mar 21.

Department of Maternal-Fetal Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41467-018-03258-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5862842PMC
March 2018

Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma.

Neurol Genet 2017 Aug 11;3(4):e164. Epub 2017 Jul 11.

New York Genome Center (K.O.W., M.O.F., N.R., A.-K.E., B.-J.C., K.A., M.S., V.V., E.A.B., J.L.M.V., M.C.Z., V.J., R.B.D.); IBM Thomas J. Watson Research Center (T.K., K.R., F.U., R.N., E.B., L.P., A.K.R.); Columbia University Medical Center (J.N.B., A.B.L., P.C., V.J.); Memorial Sloan-Kettering Cancer Center (C.G.), New York, NY; IBM Watson Health (S.H., V.V.M.), Boca Raton, FL; Laboratory of Molecular Neuro-Oncology (M.O.F., R.B.D.), and Howard Hughes Medical Institute (R.B.D.), The Rockefeller University, New York, NY. B.-J.C. is currently affiliated with Google, New York, NY. V.V. is currently affiliated with 23andMe, Inc., Mountain View, CA. E.A.B. is currently affiliated with Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1212/NXG.0000000000000164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5506390PMC
August 2017

Genetic Determinants of Cisplatin Resistance in Patients With Advanced Germ Cell Tumors.

J Clin Oncol 2016 11 30;34(33):4000-4007. Epub 2016 Sep 30.

Aditya Bagrodia, Byron H. Lee, William Lee, Eugene K. Cha, Gopa Iyer, Eugene J. Pietzak, Sizhi Paul Gao, Emily C. Zabor, Irina Ostrovnaya, Samuel D. Kaffenberger, Aijazuddin Syed, Maria E. Arcila, Raju S. Chaganti, Ritika Kundra, Jana Eng, Joseph Hreiki, Michael F. Berger, Dean F. Bajorin, Manjit S. Bains, Nikolaus Schultz, Victor E. Reuter, Joel Sheinfeld, George J. Bosl, Hikmat A. Al-Ahmadie, David B. Solit, Darren R. Feldman, Memorial Sloan Kettering Cancer Center; John P. Sfakianos, Icahn School of Medicine at Mount Sinai; Gopa Iyer, Michael F. Berger, Dean F. Bajorin, Manjit S. Bains, Victor E. Reuter, Joel Sheinfeld, George J. Bosl, Hikmat A. Al-Ahmadie, David B. Solit, Darren R. Feldman, Weill Cornell Medical College; and Vladimir Vacic, Kanika Arora, Dayna M. Oschwald, New York Genome Center, New York, NY.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1200/JCO.2016.68.7798DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5477828PMC
November 2016

Conpair: concordance and contamination estimator for matched tumor-normal pairs.

Bioinformatics 2016 10 26;32(20):3196-3198. Epub 2016 Jun 26.

New York Genome Center, New York, NY 10013, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048070PMC
http://dx.doi.org/10.1093/bioinformatics/btw389DOI Listing
October 2016

Differential burden of rare protein truncating variants in Alzheimer's disease patients compared to centenarians.

Hum Mol Genet 2016 07 3;25(14):3096-3105. Epub 2016 Jun 3.

Litwin-Zucker Research Center for the Study of Alzheimer's Disease, The Feinstein Institute for Medical Research, Northwell Health, Manhasset, NY 11030, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/hmg/ddw150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181592PMC
July 2016

Integrative genetic analysis of mouse and human AML identifies cooperating disease alleles.

J Exp Med 2016 Jan 14;213(1):25-34. Epub 2015 Dec 14.

Department of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136 Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136 Department of Medicine, Miller School of Medicine, University of Miami, Miami, FL 33136

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1084/jem.20150524DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710200PMC
January 2016

Genome-wide association study of schizophrenia in Ashkenazi Jews.

Am J Med Genet B Neuropsychiatr Genet 2015 Dec 21;168(8):649-59. Epub 2015 Jul 21.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, Maryland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/ajmg.b.32349DOI Listing
December 2015

The Influence of Microdeletions and Microduplications of 16p11.2 on Global Transcription Profiles.

J Child Neurol 2015 Dec 20;30(14):1947-53. Epub 2015 Sep 20.

Beyster Center for Genomics of Psychiatric Diseases, Department of Psychiatry, and Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1177/0883073815602066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4739844PMC
December 2015

Disease variants in genomes of 44 centenarians.

Mol Genet Genomic Med 2014 Sep 15;2(5):438-50. Epub 2014 Jun 15.

The Litwin-Zucker Research Center for the Study of Alzheimer's Disease and Memory Disorders, The Feinstein Institute for Medical Research, North Shore-LIJ Manhasset, New York, 11030.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/mgg3.86DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4190879PMC
September 2014

The variance of identity-by-descent sharing in the Wright-Fisher model.

Genetics 2013 Mar 24;193(3):911-28. Epub 2012 Dec 24.

Department of Computer Science, Columbia University, New York, NY 10027, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.112.147215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584006PMC
March 2013

Disease mutations in disordered regions--exception to the rule?

Mol Biosyst 2012 Jan 14;8(1):27-32. Epub 2011 Nov 14.

Department of Computer Science, Columbia University, New York, NY 10027, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/c1mb05251aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3307532PMC
January 2012

Graphlet kernels for prediction of functional residues in protein structures.

J Comput Biol 2010 Jan;17(1):55-72

Department of Computer Science and Engineering, University of California, Riverside, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/cmb.2009.0029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2921594PMC
January 2010

The unfoldomics decade: an update on intrinsically disordered proteins.

BMC Genomics 2008 Sep 16;9 Suppl 2:S1. Epub 2008 Sep 16.

Center for Computational Biology and Bioinformatics, Indiana University Schools of Medicine and Informatics, Indianapolis, IN 46202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-9-S2-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2559873PMC
September 2008

A probabilistic method for small RNA flowgram matching.

Pac Symp Biocomput 2008 :75-86

Computer Science and Engineering Department, University of California, Riverside, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3137517PMC
March 2008

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

BMC Mol Biol 2008 Jan 14;9. Epub 2008 Jan 14.

Department of Plant Pathology, Center for Plant Cell Biology and Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2199-9-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2262095PMC
January 2008

MSOAR: a high-throughput ortholog assignment system based on genome rearrangement.

J Comput Biol 2007 Nov;14(9):1160-75

Department of Computer Science and Engineering, University of California, Riverside, California 92521, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/cmb.2007.0048DOI Listing
November 2007

Characterization of molecular recognition features, MoRFs, and their binding partners.

J Proteome Res 2007 Jun 9;6(6):2351-66. Epub 2007 May 9.

Center for Computational Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr0701411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570643PMC
June 2007

Composition Profiler: a tool for discovery and visualization of amino acid composition differences.

BMC Bioinformatics 2007 Jun 19;8:211. Epub 2007 Jun 19.

Department of Computer Science and Engineering, University of California, Riverside, CA 92521, USA.

View Article

Download full-text PDF

Source
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-8-211DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1914087PMC
June 2007

DisProt: the Database of Disordered Proteins.

Nucleic Acids Res 2007 Jan 1;35(Database issue):D786-93. Epub 2006 Dec 1.

Department of Biochemistry and Molecular Biology, Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkl893DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1751543PMC
January 2007

Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments.

Bioinformatics 2006 Jun 21;22(12):1536-7. Epub 2006 Apr 21.

Computer Science and Engineering Department, University of California Riverside, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btl151DOI Listing
June 2006

DisProt: a database of protein disorder.

Bioinformatics 2005 Jan 13;21(1):137-40. Epub 2004 Aug 13.

Center for Information Science and Technology, Temple University Philadelphia, PA 19122, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bth476DOI Listing
January 2005