Torsten Seemann

Torsten Seemann

UNVERIFIED PROFILE

Are you Torsten Seemann?   Register this Author

Register author
Torsten Seemann

Torsten Seemann

Publications by authors named "Torsten Seemann"

Are you Torsten Seemann?   Register this Author

100Publications

2571Reads

36Profile Views

Comparative Transcriptomic and Functional Assessments of Linezolid-Responsive Small RNA Genes in Staphylococcus aureus.

mSystems 2020 Jan 7;5(1). Epub 2020 Jan 7.

Department of Microbiology and Immunology, Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Australia

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mSystems.00665-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6946794PMC
January 2020

Mining the Methylome Reveals Extensive Diversity in Staphylococcus epidermidis Restriction Modification.

mBio 2019 12 17;10(6). Epub 2019 Dec 17.

Department of Microbiology and Immunology, The University of Melbourne at The Doherty Institute for Infection and Immunity, Victoria, Australia

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mBio.02451-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6918075PMC
December 2019

Genomic investigation of Staphylococcus aureus recovered from Gambian women and newborns following an oral dose of intra-partum azithromycin.

J Antimicrob Chemother 2019 11;74(11):3170-3178

Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at The Peter Doherty Institute for Infection & Immunity, Melbourne, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jac/dkz341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798832PMC
November 2019

Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.

Clin Infect Dis 2019 10;69(9):1535-1544

Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/cid/ciz005DOI Listing
October 2019

A nonclonal outbreak of vancomycin-sensitive bacteremia in a neonatal intensive care unit.

Infect Control Hosp Epidemiol 2019 10 5;40(10):1116-1122. Epub 2019 Aug 5.

Monash Infectious Diseases, Monash Medical Centre, Clayton, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1017/ice.2019.202DOI Listing
October 2019

Unstable chromosome rearrangements in cause phenotype switching associated with persistent infections.

Proc Natl Acad Sci U S A 2019 10 16;116(40):20135-20140. Epub 2019 Sep 16.

Department of Microbiology and Immunology, The University of Melbourne, The Peter Doherty Institute for Infection and Immunity, Melbourne, 3000, Australia;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1904861116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778178PMC
October 2019

Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing in Victoria, Australia, 2012 to 2016.

J Clin Microbiol 2019 09 26;57(9). Epub 2019 Aug 26.

Antimicrobial Reference and Research Unit, Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, Australia

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JCM.00573-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711911PMC
September 2019

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era.

Nat Commun 2019 09 5;10(1):3988. Epub 2019 Sep 5.

Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41467-019-12053-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728426PMC
September 2019

Remodeling of pSK1 Family Plasmids and Enhanced Chlorhexidine Tolerance in a Dominant Hospital Lineage of Methicillin-Resistant .

Antimicrob Agents Chemother 2019 05 25;63(5). Epub 2019 Apr 25.

Department of Microbiology & Immunology, The University of Melbourne at The Peter Doherty Institute for Infection & Immunity, Melbourne, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AAC.02356-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6496109PMC
May 2019

Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia.

Microb Genom 2019 05 20;5(5). Epub 2019 May 20.

1 Microbiological Diagnostic Unit Public Health Laboratory at the University of Melbourne, The Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mgen.0.000268DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6562248PMC
May 2019

Biosynthesis and Ether-Bridge Formation in Nargenicin Macrolides.

Angew Chem Int Ed Engl 2019 03 11;58(12):3996-4001. Epub 2019 Feb 11.

Department of Microbiology and Immunology at the Doherty Institute, University of Melbourne, Melbourne, VIC, 3000, Australia.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/anie.201900290
Publisher Site
http://dx.doi.org/10.1002/anie.201900290DOI Listing
March 2019

Capacity To Utilize Raffinose Dictates Pneumococcal Disease Phenotype.

mBio 2019 01 15;10(1). Epub 2019 Jan 15.

Research Centre for Infectious Diseases, Department of Molecular and Biomedical Science, University of Adelaide, Adelaide, Australia

View Article

Download full-text PDF

Source
http://mbio.asm.org/lookup/doi/10.1128/mBio.02596-18
Publisher Site
http://dx.doi.org/10.1128/mBio.02596-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336424PMC
January 2019

Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing.

mSphere 2019 01 16;4(1). Epub 2019 Jan 16.

Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology at the Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia

View Article

Download full-text PDF

Source
http://msphere.asm.org/lookup/doi/10.1128/mSphere.00529-18
Publisher Site
http://dx.doi.org/10.1128/mSphere.00529-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336080PMC
January 2019

The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study.

J Antimicrob Chemother 2018 12;73(12):3268-3278

The Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne, at The Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Level 1, Melbourne, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jac/dky331DOI Listing
December 2018

Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis.

Nat Microbiol 2018 10 3;3(10):1175-1185. Epub 2018 Sep 3.

Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at The Doherty Institute for Infection and Immunity, Melbourne, Australia.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/s41564-018-0230-7
Publisher Site
http://dx.doi.org/10.1038/s41564-018-0230-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6660648PMC
October 2018

The First Isolation and Whole Genome Sequencing of Murray Valley Encephalitis Virus from Cerebrospinal Fluid of a Patient with Encephalitis.

Viruses 2018 06 11;10(6). Epub 2018 Jun 11.

Victorian Infectious Diseases Reference Laboratory at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, VIC 3000, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/v10060319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6024754PMC
June 2018

Human blood MAIT cell subsets defined using MR1 tetramers.

Immunol Cell Biol 2018 05 25;96(5):507-525. Epub 2018 Mar 25.

Department of Microbiology and Immunology, Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, VIC, 3000, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/imcb.12021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6446826PMC
May 2018

The ΦBT1 large serine recombinase catalyzes DNA integration at pseudo- sites in the genus .

PeerJ 2018 4;6:e4784. Epub 2018 May 4.

Department of Microbiology and Immunology at the Doherty Institute, University of Melbourne, Melbourne, VIC, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.4784DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5937489PMC
May 2018

Whole-genome sequencing reveals transmission of gonococcal antibiotic resistance among men who have sex with men: an observational study.

Sex Transm Infect 2018 03 15;94(2):151-157. Epub 2017 Dec 15.

Doherty Applied Microbial Genomics, Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1136/sextrans-2017-053287DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870456PMC
March 2018

Incorporating Whole-Genome Sequencing into Public Health Surveillance: Lessons from Prospective Sequencing of Salmonella Typhimurium in Australia.

Foodborne Pathog Dis 2018 03 16;15(3):161-167. Epub 2018 Jan 16.

1 National Centre for Epidemiology and Population Health, Research School of Population Health, The Australian National University , Canberra, Australia .

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/fpd.2017.2352DOI Listing
March 2018

Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New Zealand.

J Antimicrob Chemother 2018 02;73(2):353-364

Doherty Applied Microbial Genomics, Department of Microbiology and Immunology, The University of Melbourne, The Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Level 1, Melbourne, Victoria 3000, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jac/dkx405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5890773PMC
February 2018

Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant .

mSphere 2018 Jan-Feb;3(1). Epub 2018 Jan 24.

Department of Microbiology and Immunology, The University of Melbourne at the Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mSphere.00550-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784246PMC
January 2018

Draft Genome Sequences of Two Strains of a Newly Described Species, .

Genome Announc 2017 Sep 21;5(38). Epub 2017 Sep 21.

Department of Microbiology, Faculty of Medicine, Kuwait University, Jabriya, Kuwait

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00956-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5609413PMC
September 2017

Comparison of classical multi-locus sequence typing software for next-generation sequencing data.

Microb Genom 2017 08 4;3(8):e000124. Epub 2017 Jul 4.

3​Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, GA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mgen.0.000124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5610716PMC
August 2017

Emergence of multidrug resistance in locally-acquired human infections with Salmonella Typhimurium in Australia owing to a new clade harbouring bla.

Int J Antimicrob Agents 2017 Jul 2;50(1):101-105. Epub 2017 May 2.

Microbiological Diagnostic Unit Public Health Laboratory, Melbourne, VIC, Australia; Infectious Diseases Department, Austin Health, Heidelberg, VIC, Australia; Doherty Applied Microbial Genomics, Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Parkville, VIC, Australia; Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ijantimicag.2017.02.014DOI Listing
July 2017

Sphingobacterium cellulitidis sp. nov., isolated from clinical and environmental sources.

Int J Syst Evol Microbiol 2017 05 5;67(5):1415-1421. Epub 2017 Jun 5.

Department of Microbiology, Faculty of Medicine, Kuwait University, Jabriya, Kuwait.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/ijsem.0.001832DOI Listing
May 2017

Comment on: Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

J Antimicrob Chemother 2017 02 20;72(2):635-636. Epub 2016 Dec 20.

Doherty Applied Microbial Genomics, Peter Doherty Institute for Infection & Immunity, Melbourne, Australia.

View Article

Download full-text PDF

Source
https://academic.oup.com/jac/article-lookup/doi/10.1093/jac/
Publisher Site
http://dx.doi.org/10.1093/jac/dkw473DOI Listing
February 2017

Correspondence: Spontaneous secondary mutations confound analysis of the essential two-component system WalKR in Staphylococcus aureus.

Nat Commun 2017 02 6;8:14403. Epub 2017 Feb 6.

Department of Microbiology and Immunology, Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria 3000, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ncomms14403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5303874PMC
February 2017

Genomic analysis of ST88 community-acquired methicillin resistant in Ghana.

PeerJ 2017 28;5:e3047. Epub 2017 Feb 28.

Department of Microbiology and Immunology, Doherty Applied Microbial Genomics, Doherty Institute for Infection and Immunity, University of Melbourne , Melbourne, VIC , Australia.

View Article

Download full-text PDF

Source
https://peerj.com/articles/3047
Publisher Site
http://dx.doi.org/10.7717/peerj.3047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333547PMC
February 2017

Evolutionary origins of the emergent ST796 clone of vancomycin resistant .

PeerJ 2017 24;5:e2916. Epub 2017 Jan 24.

Department of Microbiology and Immunology, Doherty Institute for Infection and Immunity, University of Melbourne , Melbourne , Victoria , Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.2916DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5267571PMC
January 2017

A phylogenomic framework for assessing the global emergence and evolution of clonal complex 398 methicillin-resistant .

Microb Genom 2017 01 31;3(1):e000105. Epub 2017 Jan 31.

1​Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at The Doherty Institute for Infection and Immunity, Melbourne, Australia.

View Article

Download full-text PDF

Source
http://www.microbiologyresearch.org/content/journal/mgen/10.
Publisher Site
http://dx.doi.org/10.1099/mgen.0.000105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5361625PMC
January 2017

Emergence of endemic MLST non-typeable vancomycin-resistant Enterococcus faecium.

J Antimicrob Chemother 2016 12 15;71(12):3367-3371. Epub 2016 Aug 15.

Doherty Applied Microbial Genomics, Department of Microbiology and Immunology, University of Melbourne, Doherty Institute for Infection and Immunity, Melbourne, Victoria 3000, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jac/dkw314DOI Listing
December 2016

Genomic Insights into a Sustained National Outbreak of Yersinia pseudotuberculosis.

Genome Biol Evol 2016 12;8(12):3806-3814

Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at The Doherty Institute for Infection and Immunity, Melbourne, Australia.

View Article

Download full-text PDF

Source
https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
Publisher Site
http://dx.doi.org/10.1093/gbe/evw285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5521734PMC
December 2016

Sharing Is Caring: International Sharing of Data Enhances Genomic Surveillance of Listeria monocytogenes.

Clin Infect Dis 2016 09 9;63(6):846-8. Epub 2016 Jun 9.

Doherty Applied Microbial Genomics, Doherty Institute, Melbourne Department of Microbiology and Immunology, University of Melbourne, Parkville Microbiological Diagnostic Unit Public Health Laboratory, Doherty Institute, Melbourne, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/cid/ciw359DOI Listing
September 2016

Isolation of an antimicrobial compound produced by bacteria associated with reef-building corals.

PeerJ 2016 18;4:e2275. Epub 2016 Aug 18.

Australian Institute of Marine Science, Townsville, QLD, Australia; Marine Biology and Aquaculture, College of Science and Engineering, James Cook University of North Queensland, Townsville, QLD, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.2275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4994080PMC
September 2016

Functional analysis of the first complete genome sequence of a multidrug resistant sequence type 2 .

Microb Genom 2016 09 20;2(9):e000077. Epub 2016 Sep 20.

4​Doherty Applied Microbial Genomics, Department of Microbiology & Immunology at The Doherty Institute for Infection & Immunity, University of Melbourne, Melbourne, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mgen.0.000077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5537629PMC
September 2016

multi-antigen sequence typing for .

Microb Genom 2016 08 25;2(8):e000076. Epub 2016 Aug 25.

1​Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, University of Melbourne, at the Peter Doherty Institute for Infection & Immunity, Melbourne, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mgen.0.000076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320595PMC
August 2016

Genomic resources and draft assemblies of the human and porcine varieties of scabies mites, Sarcoptes scabiei var. hominis and var. suis.

Gigascience 2016 06 2;5(1):23. Epub 2016 Jun 2.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13742-016-0129-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4890329PMC
June 2016

Rapid Emergence and Evolution of Staphylococcus aureus Clones Harboring fusC-Containing Staphylococcal Cassette Chromosome Elements.

Antimicrob Agents Chemother 2016 Apr 25;60(4):2359-65. Epub 2016 Mar 25.

Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at The Doherty Institute for Infection and Immunity, Melbourne, Australia Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology & Immunology, The University of Melbourne at The Doherty Institute for Infection and Immunity, Melbourne, Australia Institute of Environmental Science and Research, Wellington, New Zealand

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AAC.03020-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4808225PMC
April 2016

: rapid efficient extraction of SNPs from multi-FASTA alignments.

Microb Genom 2016 04 29;2(4):e000056. Epub 2016 Apr 29.

1 Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mgen.0.000056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320690PMC
April 2016

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes.

J Clin Microbiol 2016 Feb 25;54(2):333-42. Epub 2015 Nov 25.

Doherty Applied Microbial Genomics, Department of Microbiology and Immunology, University of Melbourne at the Doherty Institute for Infection & Immunity, Melbourne, Victoria, Australia Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, University of Melbourne at the Doherty Institute for Infection & Immunity, Melbourne, Victoria, Australia Infectious Diseases Department, Austin Health, Heidelberg, Victoria, Australia

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JCM.02344-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733179PMC
February 2016

Mitochondrial Genome Sequence of the Scabies Mite Provides Insight into the Genetic Diversity of Individual Scabies Infections.

PLoS Negl Trop Dis 2016 Feb 12;10(2):e0004384. Epub 2016 Feb 12.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pntd.0004384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752359PMC
February 2016

Functional analysis of a bacitracin resistance determinant located on ICECp1, a novel Tn916-like element from a conjugative plasmid in Clostridium perfringens.

Antimicrob Agents Chemother 2015 Nov 17;59(11):6855-65. Epub 2015 Aug 17.

Australian Research Council Centre of Excellence in Structural and Functional Microbial Genomics, Department of Microbiology, Monash University, Clayton, Victoria, Australia

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AAC.01643-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4604367PMC
November 2015

Genome sequence comparisons of serial multi-drug-resistant isolates over 21 years of infection in a single patient.

Microb Genom 2015 Nov 26;1(5):e000037. Epub 2015 Nov 26.

Department of Microbiology and Immunology, University of Melbourne, Melbourne, Victoria 3000, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mgen.0.000037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320678PMC
November 2015

Large tandem chromosome expansions facilitate niche adaptation during persistent infection with drug-resistant .

Microb Genom 2015 Aug 3;1(2):e000026. Epub 2015 Aug 3.

Microbiological Diagnostic Unit Public Health Laboratory, University of Melbourne, Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mgen.0.000026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320569PMC
August 2015

A glimpse into the past and predictions for the future: the molecular evolution of the tuberculosis agent.

Mol Microbiol 2014 Sep 3;93(5):835-52. Epub 2014 Aug 3.

Institut Pasteur, Unit for Integrated Mycobacterial Pathogenomics, Paris, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/mmi.12720DOI Listing
September 2014

In silico prediction of Gallibacterium anatis pan-immunogens.

Vet Res 2014 Aug 8;45:80. Epub 2014 Aug 8.

Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, 1870, Frederiksberg C, Denmark.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13567-014-0080-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4423631PMC
August 2014

Prokka: rapid prokaryotic genome annotation.

Authors:
Torsten Seemann

Bioinformatics 2014 Jul 18;30(14):2068-9. Epub 2014 Mar 18.

Victorian Bioinformatics Consortium, Monash University, Clayton 3800 and Life Sciences Computation Centre, Victorian Life Sciences Computation Initiative, Carlton 3053, AustraliaVictorian Bioinformatics Consortium, Monash University, Clayton 3800 and Life Sciences Computation Centre, Victorian Life Sciences Computation Initiative, Carlton 3053, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu153DOI Listing
July 2014

Emergence of a ribotype 244 strain of Clostridium difficile associated with severe disease and related to the epidemic ribotype 027 strain.

Clin Infect Dis 2014 Jun 4;58(12):1723-30. Epub 2014 Apr 4.

Monash Infectious Diseases, Monash Health Department of Microbiology, Monash University Department of Microbiology, Monash Health, Clayton Department of Microbiology and Immunology, University of Melbourne, Parkville, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/cid/ciu203DOI Listing
June 2014

Ten recommendations for creating usable bioinformatics command line software.

Authors:
Torsten Seemann

Gigascience 2013 Nov 13;2(1):15. Epub 2013 Nov 13.

Victorian Bioinformatics Consortium, Building 76 Monash University Clayton, Clayton, VIC 3800, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2047-217X-2-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076505PMC
November 2013

Leptospiral LruA is required for virulence and modulates an interaction with mammalian apolipoprotein AI.

Infect Immun 2013 Oct 5;81(10):3872-9. Epub 2013 Aug 5.

Australian Research Council Centre of Excellence in Structural and Functional Microbial Genomics, Department of Microbiology, Monash University, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/IAI.01195-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811782PMC
October 2013

Analysis of the small RNA transcriptional response in multidrug-resistant Staphylococcus aureus after antimicrobial exposure.

Antimicrob Agents Chemother 2013 Aug 3;57(8):3864-74. Epub 2013 Jun 3.

Austin Centre for Infection Research, Infectious Diseases Department, Austin Health, Heidelberg, Victoria, Australia.

View Article

Download full-text PDF

Source
http://aac.asm.org/lookup/doi/10.1128/AAC.00263-13
Publisher Site
http://dx.doi.org/10.1128/AAC.00263-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3719707PMC
August 2013

Genomic insights to control the emergence of vancomycin-resistant enterococci.

mBio 2013 Aug 13;4(4). Epub 2013 Aug 13.

Austin Centre for Infection Research (ACIR), Infectious Diseases Department, Austin Health, Heidelberg, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mBio.00412-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3747580PMC
August 2013

Decreased vancomycin susceptibility in Staphylococcus aureus caused by IS256 tempering of WalKR expression.

Antimicrob Agents Chemother 2013 Jul 29;57(7):3240-9. Epub 2013 Apr 29.

Department of Microbiology and Immunology, University of Melbourne, Parkville, Victoria, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AAC.00279-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697332PMC
July 2013

Bioinformatic prediction of the exportome of Babesia bovis and identification of novel proteins in parasite-infected red blood cells.

Int J Parasitol 2013 Apr 8;43(5):409-16. Epub 2013 Feb 8.

Department of Microbiology, Monash University, Victoria 3800, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ijpara.2013.01.002DOI Listing
April 2013

Complete genome sequence of the avian pathogenic Escherichia coli strain APEC O78.

Genome Announc 2013 Mar 21;1(2):e0002613. Epub 2013 Mar 21.

Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, VMRI 2, Iowa State University, Ames, Iowa, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00026-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622999PMC
March 2013