Publications by authors named "Todd Wylie"

57Publications

Methods and implementation of a pediatric asthma pharmacogenomic study in the emergency department setting.

Pharmacogenet Genomics 2020 Dec;30(9):201-207

aDepartment of Emergency Medicine, Division of Research, University of Florida College of Medicine - Jacksonville bUniversity of Florida Health Jacksonville cNemours Center for Pharmacogenomics and Translational Research, Jacksonville, Florida, USA.

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http://dx.doi.org/10.1097/FPC.0000000000000414DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7536354PMC
December 2020

Using an Online Vaccination Registry to Confirm Tetanus Status in Children with Tetanus-prone Wounds.

West J Emerg Med 2020 Aug 21;21(5):1140-1146. Epub 2020 Aug 21.

University of Florida in Gainesville, Department of Emergency Medicine, Gainesville, Florida.

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http://dx.doi.org/10.5811/westjem.2020.6.46582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514397PMC
August 2020

A virome sequencing approach to feline oral squamous cell carcinoma to evaluate viral causative factors.

Vet Microbiol 2020 Jan 2;240:108491. Epub 2019 Nov 2.

Department of Veterinary Medicine and Surgery, University of Missouri, 900 E. Campus Drive, Columbia, MO 65211, USA.

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http://dx.doi.org/10.1016/j.vetmic.2019.108491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7117531PMC
January 2020

Reducing Variability in the Infant Sepsis Evaluation (REVISE): A National Quality Initiative.

Pediatrics 2019 09 21;144(3). Epub 2019 Aug 21.

Department of Pediatrics, Children's Hospital at Dartmouth-Hitchcock, Lebanon, New Hampshire.

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http://dx.doi.org/10.1542/peds.2018-2201DOI Listing
September 2019

Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese.

Sci Rep 2019 04 11;9(1):5954. Epub 2019 Apr 11.

National Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB, Canada.

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http://dx.doi.org/10.1038/s41598-019-42355-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459860PMC
April 2019

Whole-Genome Sequencing of Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection.

Front Cell Infect Microbiol 2019 8;9:14. Epub 2019 Feb 8.

Division of Pediatric Infectious Diseases, Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, United States.

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http://dx.doi.org/10.3389/fcimb.2019.00014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6375827PMC
December 2019

Detection of Viruses in Clinical Samples by Use of Metagenomic Sequencing and Targeted Sequence Capture.

J Clin Microbiol 2018 12 27;56(12). Epub 2018 Nov 27.

Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1128/JCM.01123-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6258860PMC
December 2018

The vaginal eukaryotic DNA virome and preterm birth.

Am J Obstet Gynecol 2018 08 5;219(2):189.e1-189.e12. Epub 2018 May 5.

Department of Obstetrics and Gynecology, Division of Maternal Fetal Medicine, Washington University School of Medicine, St Louis, St Louis, MO. Electronic address:

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http://dx.doi.org/10.1016/j.ajog.2018.04.048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6066425PMC
August 2018

Carriage of Cronobacter sakazakii in the Very Preterm Infant Gut.

Clin Infect Dis 2018 07;67(2):269-274

Department of Pediatrics, Washington University School of Medicine, St Louis, Missouri.

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http://dx.doi.org/10.1093/cid/ciy062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030953PMC
July 2018

Genome Sequence of Enterovirus D68 from St. Louis, Missouri, USA, 2016.

Genome Announc 2017 Mar 2;5(9). Epub 2017 Mar 2.

Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1128/genomeA.01630-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5334578PMC
March 2017

Acute Hypotonia in an Infant.

J Emerg Med 2017 Jun 4;52(6):e245-e247. Epub 2017 Feb 4.

Department of Emergency Medicine, University of Florida College of Medicine - Jacksonville, Jacksonville, Florida.

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http://dx.doi.org/10.1016/j.jemermed.2016.12.037DOI Listing
June 2017

Impact of Video Discharge Instructions for Pediatric Fever and Closed Head Injury from the Emergency Department.

J Emerg Med 2016 Mar 21;50(3):e177-83. Epub 2016 Jan 21.

Center for Health Equity and Quality Research, University of Florida College of Medicine Jacksonville, Jacksonville, Florida.

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http://dx.doi.org/10.1016/j.jemermed.2015.10.006DOI Listing
March 2016

Enhanced virome sequencing using targeted sequence capture.

Genome Res 2015 Dec 22;25(12):1910-20. Epub 2015 Sep 22.

The Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri 63110, USA;

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http://dx.doi.org/10.1101/gr.191049.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665012PMC
December 2015

Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains.

Medicine (Baltimore) 2015 Sep;94(37):e1534

From the Department of Pediatrics (MR, PGH, TW, C-ADB, SAF); Department of Pediatrics, McDonnell Genome Institute (TW, HG, ES, GMW); Department of Pathology and Immunology at Washington University School of Medicine, 660 S. Euclid Ave., St. Louis, MI 63110 (C-ADB); Department of Medicine at Emory University School of Medicine, 201 Dowman Dr., Atlanta, GA 30322 (SWS, EC); Southern Illinois University School of Medicine, 801 North Rutledge St., Springfield, IL 62702 (MR); and Jackson Laboratory for Genomic Medicine, 10 Discovery Dr., Farmington, CT 06032 (ES, GMW).

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http://dx.doi.org/10.1097/MD.0000000000001534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4635816PMC
September 2015

Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS Comput Biol 2015 Jul 9;11(7):e1004274. Epub 2015 Jul 9.

The Genome Institute, Washington University in St. Louis, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497734PMC
July 2015

Reduced use of occult bacteremia blood screens by emergency medicine physicians using immunization registry for children presenting with fever without a source.

Pediatr Emerg Care 2012 Jul;28(7):640-5

Department of Emergency Medicine, University of Florida College of Medicine-Jacksonville, Jacksonville, FL 32209, USA.

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http://dx.doi.org/10.1097/PEC.0b013e31825cfd3eDOI Listing
July 2012

The curriculum development process for an international emergency medicine rotation.

Teach Learn Med 2012 ;24(1):71-80

Department of Emergency Medicine, University of Florida College of Medicine, Jacksonville, Florida 32209, USA.

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http://dx.doi.org/10.1080/10401334.2012.641491DOI Listing
May 2012

Accuracy and integrity include hearing both sides.

Authors:
D Todd Wylie

Optometry 2010 Sep;81(9):429

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http://dx.doi.org/10.1016/j.optm.2010.06.003DOI Listing
September 2010

Stabilization and treatment of dental avulsions and fractures by emergency physicians using just-in-time training.

Ann Emerg Med 2009 Oct 22;54(4):585-92. Epub 2009 Aug 22.

Department of Emergency Medicine, University of Florida Health Science Center Jacksonville, Jacksonville, FL 32209, USA.

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http://dx.doi.org/10.1016/j.annemergmed.2009.06.510DOI Listing
October 2009

VarScan: variant detection in massively parallel sequencing of individual and pooled samples.

Bioinformatics 2009 Sep 19;25(17):2283-5. Epub 2009 Jun 19.

The Genome Center at Washington University School of Medicine, St Louis, MO 63108, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2734323PMC
September 2009

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.

BMC Genomics 2008 Nov 4;9:525. Epub 2008 Nov 4.

The Genome Center at Washington University School of Medicine, St, Louis, MO 63108, USA.

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http://dx.doi.org/10.1186/1471-2164-9-525DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2588608PMC
November 2008

Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics.

Nucleic Acids Res 2009 Jan 21;37(Database issue):D571-8. Epub 2008 Oct 21.

The Genome Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkn744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686480PMC
January 2009

Genome analysis of the platypus reveals unique signatures of evolution.

Authors:
Wesley C Warren LaDeana W Hillier Jennifer A Marshall Graves Ewan Birney Chris P Ponting Frank Grützner Katherine Belov Webb Miller Laura Clarke Asif T Chinwalla Shiaw-Pyng Yang Andreas Heger Devin P Locke Pat Miethke Paul D Waters Frédéric Veyrunes Lucinda Fulton Bob Fulton Tina Graves John Wallis Xose S Puente Carlos López-Otín Gonzalo R Ordóñez Evan E Eichler Lin Chen Ze Cheng Janine E Deakin Amber Alsop Katherine Thompson Patrick Kirby Anthony T Papenfuss Matthew J Wakefield Tsviya Olender Doron Lancet Gavin A Huttley Arian F A Smit Andrew Pask Peter Temple-Smith Mark A Batzer Jerilyn A Walker Miriam K Konkel Robert S Harris Camilla M Whittington Emily S W Wong Neil J Gemmell Emmanuel Buschiazzo Iris M Vargas Jentzsch Angelika Merkel Juergen Schmitz Anja Zemann Gennady Churakov Jan Ole Kriegs Juergen Brosius Elizabeth P Murchison Ravi Sachidanandam Carly Smith Gregory J Hannon Enkhjargal Tsend-Ayush Daniel McMillan Rosalind Attenborough Willem Rens Malcolm Ferguson-Smith Christophe M Lefèvre Julie A Sharp Kevin R Nicholas David A Ray Michael Kube Richard Reinhardt Thomas H Pringle James Taylor Russell C Jones Brett Nixon Jean-Louis Dacheux Hitoshi Niwa Yoko Sekita Xiaoqiu Huang Alexander Stark Pouya Kheradpour Manolis Kellis Paul Flicek Yuan Chen Caleb Webber Ross Hardison Joanne Nelson Kym Hallsworth-Pepin Kim Delehaunty Chris Markovic Pat Minx Yucheng Feng Colin Kremitzki Makedonka Mitreva Jarret Glasscock Todd Wylie Patricia Wohldmann Prathapan Thiru Michael N Nhan Craig S Pohl Scott M Smith Shunfeng Hou Mikhail Nefedov Pieter J de Jong Marilyn B Renfree Elaine R Mardis Richard K Wilson

Nature 2008 May;453(7192):175-83

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature06936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803040PMC
May 2008

Whole-genome sequencing and variant discovery in C. elegans.

Nat Methods 2008 Feb 20;5(2):183-8. Epub 2008 Jan 20.

Washington University School of Medicine, Department of Genetics and Genome Sequencing Center, 4444 Forest Park Blvd., St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nmeth.1179DOI Listing
February 2008

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages.

Mol Biochem Parasitol 2004 Oct;137(2):277-91

Department of Genetics, Genome Sequencing Center, Washington University School of Medicine, Box 8501, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S016668510400179
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http://dx.doi.org/10.1016/j.molbiopara.2004.05.015DOI Listing
October 2004

Pediatric cardiac disorders.

J Emerg Med 2004 Jan;26(1):65-79

Department of Emergency Medicine, University Of Florida, Shands, Jacksonville, Florida 32209, USA.

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http://dx.doi.org/10.1016/j.jemermed.2003.09.004DOI Listing
January 2004

Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes.

Nucleic Acids Res 2004 Jan;32(Database issue):D423-6

The Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA.

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http://dx.doi.org/10.1093/nar/gkh010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308745PMC
January 2004