Satoshi Tabata

Satoshi Tabata

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Satoshi Tabata

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Pixelwise Phase Unwrapping Based on Ordered Periods Phase Shift.

Sensors (Basel) 2019 Jan 17;19(2). Epub 2019 Jan 17.

Department of Creative Informatics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.

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http://dx.doi.org/10.3390/s19020377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358991PMC
January 2019

Genome structure of Rosa multiflora, a wild ancestor of cultivated roses.

DNA Res 2018 Apr;25(2):113-121

Suntory Global Innovation Center Ltd, Seika-cho, Soraku-gun, Kyoto 619-0284, Japan.

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http://dx.doi.org/10.1093/dnares/dsx042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5909451PMC
April 2018

Synchronized High-Speed Vision Sensor Network for Expansion of Field of View.

Sensors (Basel) 2018 Apr 21;18(4). Epub 2018 Apr 21.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

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http://dx.doi.org/10.3390/s18041276DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5948748PMC
April 2018

Plant Genome DataBase Japan (PGDBj).

Methods Mol Biol 2017 ;1533:45-77

Department of Technology Development, Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba, 292-0818, Japan.

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http://dx.doi.org/10.1007/978-1-4939-6658-5_3DOI Listing
January 2018

LjMOT1, a high-affinity molybdate transporter from Lotus japonicus, is essential for molybdate uptake, but not for the delivery to nodules.

Plant J 2017 Jun 12;90(6):1108-1119. Epub 2017 Apr 12.

Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.

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http://dx.doi.org/10.1111/tpj.13532DOI Listing
June 2017

Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms).

Curr Genet 2016 Nov 18;62(4):887-896. Epub 2016 Apr 18.

Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Komaba 3-8-1, Meguro-ku, Tokyo, 153-8902, Japan.

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http://dx.doi.org/10.1007/s00294-016-0598-yDOI Listing
November 2016

The LORE1 insertion mutant resource.

Plant J 2016 10 27;88(2):306-317. Epub 2016 Sep 27.

Centre for Carbohydrate Recognition and Signalling, Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10, DK-8000, Aarhus C, Denmark.

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http://dx.doi.org/10.1111/tpj.13243DOI Listing
October 2016

Sequencing and comparative analyses of the genomes of zoysiagrasses.

DNA Res 2016 Apr 14;23(2):171-80. Epub 2016 Mar 14.

Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan Graduate School of Life Sciences, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai 980-8577, Japan

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http://dx.doi.org/10.1093/dnares/dsw006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833424PMC
April 2016

Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae.

Plant Cell Physiol 2016 Jan 7;57(1):e6. Epub 2016 Jan 7.

Bioinformatics Laboratory, School of Agriculture, Meiji University, 1-1-1 Higashi-mita, Tama-ku, Kawasaki, Kanagawa, 214-8571 Japan

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http://dx.doi.org/10.1093/pcp/pcv195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722176PMC
January 2016

GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.

Bioinformatics 2015 Dec 10;31(23):3733-41. Epub 2015 Aug 10.

Department of Technology Development, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv465DOI Listing
December 2015

A reference genetic linkage map of apomictic Hieracium species based on expressed markers derived from developing ovule transcripts.

Ann Bot 2015 Mar 22;115(4):567-80. Epub 2014 Dec 22.

Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan and Commonwealth Scientific and Industrial Research Organization (CSIRO), Agriculture Flagship, Waite Campus, Hartley Grove, Urrbrae, South Australia 5064, Australia

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http://aob.oxfordjournals.org/content/early/2014/12/20/aob.m
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http://aob.oxfordjournals.org/cgi/doi/10.1093/aob/mcu249
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http://dx.doi.org/10.1093/aob/mcu249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4343286PMC
March 2015

Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.

Breed Sci 2014 Sep 1;64(3):264-71. Epub 2014 Sep 1.

Department of Plant Genome Research, Kazusa DNA Research Institute , Kisarazu, Chiba 292-0818 , Japan.

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http://dx.doi.org/10.1270/jsbbs.64.264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4154615PMC
September 2014

Sll0939 is induced by Slr0967 in the cyanobacterium Synechocystis sp. PCC6803 and is essential for growth under various stress conditions.

Plant Physiol Biochem 2014 Aug 21;81:36-43. Epub 2014 Feb 21.

Research Center for RNA Science, RIST, Tokyo University of Science, Noda, Chiba 278-8510, Japan; Department of Biology, Faculty of Science, Tokyo University of Science, Shinjuku, Tokyo 162-8601, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.plaphy.2014.02.007DOI Listing
August 2014

Lotus japonicus SUNERGOS1 encodes a predicted subunit A of a DNA topoisomerase VI that is required for nodule differentiation and accommodation of rhizobial infection.

Plant J 2014 Jun 6;78(5):811-21. Epub 2014 May 6.

Agriculture and Agri-Food Canada, Southern Crop Protection and Food Research Centre, London, ON, N5V 4T3, Canada; Department of Biology, University of Western Ontario, London, ON, N6A 5B7, Canada.

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http://doi.wiley.com/10.1111/tpj.12520
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http://dx.doi.org/10.1111/tpj.12520DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4282747PMC
June 2014

Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.

J Plant Res 2014 May 5;127(3):389-97. Epub 2014 Mar 5.

Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Komaba 3-8-1, Meguro-ku, Tokyo, 153-8902, Japan,

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http://dx.doi.org/10.1007/s10265-014-0627-1DOI Listing
May 2014

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.

Nat Commun 2014 May 28;5:3978. Epub 2014 May 28.

1] Center for Biological Resources and Informatics, Tokyo Institute of Technology, Yokohama City, Kanagawa 226-8501, Japan [2] CREST, Japan Science and Technology Agency, Yokohama City, Kanagawa 226-8501, Japan [3] Earth-Life Science Institute, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8551, Japan [4] Department of Biological Sciences, Tokyo Institute of Technology, Yokohama City, Kanagawa 226-8501, Japan.

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http://dx.doi.org/10.1038/ncomms4978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4052687PMC
May 2014

Lotus japonicus cytokinin receptors work partially redundantly to mediate nodule formation.

Plant Cell 2014 Feb 28;26(2):678-94. Epub 2014 Feb 28.

Agriculture and Agri-Food Canada, Southern Crop Protection and Food Research Centre, London, Ontario N5V 4T3, Canada.

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http://dx.doi.org/10.1105/tpc.113.119362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967033PMC
February 2014

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.

Nucleic Acids Res 2014 Jan 25;42(Database issue):D666-70. Epub 2013 Nov 25.

Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan, Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan, Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto 603-8555, Japan and Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu 292-0818, Japan.

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http://dx.doi.org/10.1093/nar/gkt1145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965071PMC
January 2014

Rhizobial infection does not require cortical expression of upstream common symbiosis genes responsible for the induction of Ca(2+) spiking.

Plant J 2014 Jan 12;77(1):146-59. Epub 2013 Dec 12.

Division of Plant Sciences, National Institute of Agrobiological Sciences, 2-1-2 Kannon-dai, Tsukuba, 305-8602, Japan.

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http://dx.doi.org/10.1111/tpj.12374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253040PMC
January 2014

Commonalities and differences among symbiosis islands of three Mesorhizobium loti strains.

Microbes Environ 2013 11;28(2):275-8. Epub 2013 May 11.

Department of Plant Genome Research, Kazusa DNA Research Institute, 2–6–7 Kazusa-kamatari Kisarazu, Chiba 292–0818, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070662PMC
http://dx.doi.org/10.1264/jsme2.me12201DOI Listing
December 2013

Construction of a reference genetic linkage map for carnation (Dianthus caryophyllus L.).

BMC Genomics 2013 Oct 26;14:734. Epub 2013 Oct 26.

NARO Institute of Floricultural Science (NIFS), 2-1 Fujimoto, Tsukuba, Ibaraki 305-8519, Japan.

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http://dx.doi.org/10.1186/1471-2164-14-734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3870981PMC
October 2013

Two Lotus japonicus symbiosis mutants impaired at distinct steps of arbuscule development.

Plant J 2013 Jul 10;75(1):117-129. Epub 2013 Jun 10.

Faculty of Biology, Genetics, University of Munich, Großhaderner Straße 2-4, 82152, Martinsried, Germany.

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http://dx.doi.org/10.1111/tpj.12220DOI Listing
July 2013

LjMATE1: a citrate transporter responsible for iron supply to the nodule infection zone of Lotus japonicus.

Plant Cell Physiol 2013 Apr 5;54(4):585-94. Epub 2013 Feb 5.

Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, 611-0011 Japan.

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http://dx.doi.org/10.1093/pcp/pct019DOI Listing
April 2013

Too much love, a novel Kelch repeat-containing F-box protein, functions in the long-distance regulation of the legume-Rhizobium symbiosis.

Plant Cell Physiol 2013 Apr 6;54(4):433-47. Epub 2013 Feb 6.

Department of Basic Biology in the School of Life Science of the Graduate University for Advanced Studies, Aichi, Japan.

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http://dx.doi.org/10.1093/pcp/pct022DOI Listing
April 2013

Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms.

Int J Plant Genomics 2012 27;2012:437026. Epub 2012 Nov 27.

Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8572, Japan.

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http://dx.doi.org/10.1155/2012/437026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3514829PMC
December 2012

Negative regulation of CCaMK is essential for symbiotic infection.

Plant J 2012 Nov 13;72(4):572-84. Epub 2012 Sep 13.

Agriculture and Agri-Food Canada, Southern Crop Protection and Food Research Centre, London, Ontario N5V 4T3, Canada.

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http://dx.doi.org/10.1111/j.1365-313X.2012.05098.xDOI Listing
November 2012

Functional divergence of MYB-related genes, WEREWOLF and AtMYB23 in Arabidopsis.

Biosci Biotechnol Biochem 2012 7;76(5):883-7. Epub 2012 May 7.

Interdisciplinary Research Organization, University of Miyazaki, Japan.

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http://dx.doi.org/10.1271/bbb.110811DOI Listing
October 2012

Lotus japonicus ARPC1 is required for rhizobial infection.

Plant Physiol 2012 Oct 3;160(2):917-28. Epub 2012 Aug 3.

Agriculture and Agri-Food Canada, Southern Crop Protection and Food Research Centre, London, Ontario, Canada N5V 4T3.

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http://dx.doi.org/10.1104/pp.112.202572DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461565PMC
October 2012

Transcriptome analysis of carnation (Dianthus caryophyllus L.) based on next-generation sequencing technology.

BMC Genomics 2012 Jul 2;13:292. Epub 2012 Jul 2.

National Institute of Floricultural Sciences, National Agriculture and Food Research Organization, Fujimoto 2-1, Tsukuba, Ibaraki 305-8519, Japan.

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http://dx.doi.org/10.1186/1471-2164-13-292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3411436PMC
July 2012

Availability of Micro-Tom mutant library combined with TILLING in molecular breeding of tomato fruit shelf-life.

Breed Sci 2012 Jun 19;62(2):202-8. Epub 2012 Jun 19.

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba, Ibaraki 305-8572, Japan.

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http://dx.doi.org/10.1270/jsbbs.62.202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3405968PMC
June 2012

Characterization of active miniature inverted-repeat transposable elements in the peanut genome.

Theor Appl Genet 2012 May;124(8):1429-38

Department of Plant Genome Research, Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.

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http://dx.doi.org/10.1007/s00122-012-1798-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3336055PMC
May 2012

Establishment of a Lotus japonicus gene tagging population using the exon-targeting endogenous retrotransposon LORE1.

Plant J 2012 Feb 12;69(4):720-30. Epub 2011 Dec 12.

Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan.

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http://doi.wiley.com/10.1111/j.1365-313X.2011.04826.x
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http://dx.doi.org/10.1111/j.1365-313X.2011.04826.xDOI Listing
February 2012

LjABCB1, an ATP-binding cassette protein specifically induced in uninfected cells of Lotus japonicus nodules.

J Plant Physiol 2012 Feb 29;169(3):322-6. Epub 2011 Dec 29.

Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.

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http://dx.doi.org/10.1016/j.jplph.2011.11.008DOI Listing
February 2012

Identification of Mesorhizobium loti genes relevant to symbiosis by using signature-tagged mutants.

Microbes Environ 2011 29;26(2):165-71. Epub 2011 Mar 29.

Graduate School of Life Sciences, Tohoku University, Sendai 980–8577, Japan.

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http://dx.doi.org/10.1264/jsme2.me10213DOI Listing
October 2011

Isolation and genetic characterization of Aurantimonas and Methylobacterium strains from stems of hypernodulated soybeans.

Microbes Environ 2011 21;26(2):172-80. Epub 2011 Apr 21.

Graduate School of Life Sciences, Tohoku University, Sendai 980–8577, Japan.

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http://dx.doi.org/10.1264/jsme2.me10203DOI Listing
October 2011

Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S.

DNA Res 2011 Oct 29;18(5):393-9. Epub 2011 Jul 29.

Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Komaba 3-8-1, Meguro-ku, Tokyo 153-8902, Japan.

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http://dx.doi.org/10.1093/dnares/dsr026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3190959PMC
October 2011

The genome of the mesopolyploid crop species Brassica rapa.

Nat Genet 2011 Aug 28;43(10):1035-9. Epub 2011 Aug 28.

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences (IVF, CAAS), Beijing, China.

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http://dx.doi.org/10.1038/ng.919DOI Listing
August 2011

Peroxiredoxins and NADPH-dependent thioredoxin systems in the model legume Lotus japonicus.

Plant Physiol 2011 Jul 11;156(3):1535-47. Epub 2011 May 11.

Departamento de Nutrición Vegetal, Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas, 50080 Zaragoza, Spain.

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http://dx.doi.org/10.1104/pp.111.177196DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3131139PMC
July 2011

The Clavata2 genes of pea and Lotus japonicus affect autoregulation of nodulation.

Plant J 2011 Mar 31;65(6):861-71. Epub 2011 Jan 31.

Centre for Carbohydrate Recognition and Signalling, Department of Molecular Biology, Aarhus University, Gustav Wieds Vej 10, DK-8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1111/j.1365-313X.2010.04474.xDOI Listing
March 2011

Regulation of nonsymbiotic and truncated hemoglobin genes of Lotus japonicus in plant organs and in response to nitric oxide and hormones.

New Phytol 2011 Feb 12;189(3):765-76. Epub 2010 Nov 12.

Departamento de Nutrición Vegetal, Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas, Zaragoza, Spain.

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http://dx.doi.org/10.1111/j.1469-8137.2010.03527.xDOI Listing
February 2011

Transcriptome analysis of respiration-responsive genes in Chlamydomonas reinhardtii: mitochondrial retrograde signaling coordinates the genes for cell proliferation with energy-producing metabolism.

Plant Cell Physiol 2011 Feb 11;52(2):333-43. Epub 2010 Dec 11.

Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto, 606-8522 Japan.

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http://dx.doi.org/10.1093/pcp/pcq192DOI Listing
February 2011

Proteome analysis of pod and seed development in the model legume Lotus japonicus.

J Proteome Res 2010 Nov 29;9(11):5715-26. Epub 2010 Sep 29.

Department of Molecular Biology, University of Aarhus, DK-8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1021/pr100511uDOI Listing
November 2010

Genomewide characterization of the light-responsive and clock-controlled output pathways in Lotus japonicus with special emphasis of its uniqueness.

Plant Cell Physiol 2010 Oct 9;51(10):1800-14. Epub 2010 Sep 9.

Laboratory of Molecular Microbiology, School of Agriculture, Nagoya University, Chikusa-ku, Nagoya 464-8601, Japan.

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https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/
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http://dx.doi.org/10.1093/pcp/pcq140DOI Listing
October 2010

Community- and genome-based views of plant-associated bacteria: plant-bacterial interactions in soybean and rice.

Plant Cell Physiol 2010 Sep 4;51(9):1398-410. Epub 2010 Aug 4.

Memuro Research Station, National Agricultural Research Center for Hokkaido Region, Shinsei, Memuro-cho, Kasaigun, Hokkaido 082-0081, Japan.

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https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/
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http://dx.doi.org/10.1093/pcp/pcq119DOI Listing
September 2010

Structural analyses of the genomes in legumes.

Curr Opin Plant Biol 2010 Apr 13;13(2):146-52. Epub 2010 Jan 13.

Kazusa DNA Research Institute, Kisarazu, Chiba, Japan.

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http://dx.doi.org/10.1016/j.pbi.2009.12.007DOI Listing
April 2010

Mapping candidate QTLs related to plant persistency in red clover.

Theor Appl Genet 2010 Apr 20;120(6):1253-63. Epub 2010 Jan 20.

All-Russian Williams Fodder Crop Research Institute, 141055, Lobnya, Moscow Region, Russia.

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http://dx.doi.org/10.1007/s00122-009-1253-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2839475PMC
April 2010

Evolution and regulation of the Lotus japonicus LysM receptor gene family.

Mol Plant Microbe Interact 2010 Apr;23(4):510-21

Centre for Carbohydrate Recognition and Signalling, MBI, University of Aarhus, Gustav Wieds Vej 10, Aarhus C, Denmark.

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http://dx.doi.org/10.1094/MPMI-23-4-0510DOI Listing
April 2010

Identification and functional analysis of type III effector proteins in Mesorhizobium loti.

Mol Plant Microbe Interact 2010 Feb;23(2):223-34

Department of Biological Sciences, Faculty of Science, Nara Women's University, Nara 630-8506, Japan.

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http://dx.doi.org/10.1094/MPMI-23-2-0223DOI Listing
February 2010

Integration of cytogenetic and genetic linkage maps of Lotus japonicus, a model plant for legumes.

Chromosome Res 2010 Feb 15;18(2):287-99. Epub 2010 Jan 15.

Kobe University, Tsurukabuto, Nada, Japan.

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http://link.springer.com/10.1007/s10577-009-9103-5
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http://dx.doi.org/10.1007/s10577-009-9103-5DOI Listing
February 2010