Prof. Ravishankar Ramachandran, PhD - Central Drug Research Institute - Head, Molecular and Structural biology Division

Prof. Ravishankar Ramachandran

PhD

Central Drug Research Institute

Head, Molecular and Structural biology Division

Lucknow, Uttar Pradesh | India

Prof. Ravishankar Ramachandran, PhD - Central Drug Research Institute - Head, Molecular and Structural biology Division

Prof. Ravishankar Ramachandran

PhD

Introduction

Primary Affiliation: Central Drug Research Institute - Lucknow, Uttar Pradesh , India

Publications

50Publications

467Reads

247Profile Views

209PubMed Central Citations

Piscidin-1-analogs with double L- and D-lysine residues exhibited different conformations in lipopolysaccharide but comparable anti-endotoxin activities.

Sci Rep 2017 01 4;7:39925. Epub 2017 Jan 4.

Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow-226 031, India.

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http://dx.doi.org/10.1038/srep39925DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209718PMC
January 2017
23 Reads
4 Citations
5.080 Impact Factor

Small molecule adiponectin receptor agonist GTDF protects against skeletal muscle atrophy.

Mol Cell Endocrinol 2017 01 16;439:273-285. Epub 2016 Sep 16.

Division of Biochemistry, CSIR-Central Drug Research Institute, 10, Janakipuram Extn, Sitapur Road, Lucknow 226031, India; Academy of Scientific and Innovative Research (AcSIR), CSIR- Central Drug Research Institute Campus, 10, Janakipuram Extn, Sitapur Road, Lucknow 226031, India. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03037207163037
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http://dx.doi.org/10.1016/j.mce.2016.09.013DOI Listing
January 2017
7 Reads
4.410 Impact Factor

The M. tuberculosis HAD phosphatase (Rv3042c) interacts with host proteins and is inhibited by Clofazimine.

Cell Mol Life Sci 2016 09 17;73(17):3401-17. Epub 2016 Mar 17.

Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow, 226031, Uttar Pradesh, India.

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http://dx.doi.org/10.1007/s00018-016-2177-2DOI Listing
September 2016
18 Reads
1 Citation
5.810 Impact Factor

Protein kinase C-δ inhibitor, Rottlerin inhibits growth and survival of mycobacteria exclusively through Shikimate kinase.

Biochem Biophys Res Commun 2016 09 4;478(2):721-6. Epub 2016 Aug 4.

Division of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, India. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2016.08.014DOI Listing
September 2016
5 Reads
2.300 Impact Factor

Single Amino Acid Substitutions at Specific Positions of the Heptad Repeat Sequence of Piscidin-1 Yielded Novel Analogs That Show Low Cytotoxicity and In Vitro and In Vivo Antiendotoxin Activity.

Antimicrob Agents Chemother 2016 06 23;60(6):3687-99. Epub 2016 May 23.

Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Lucknow, India Academy of Scientific and Innovative Research, Chennai, India

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http://dx.doi.org/10.1128/AAC.02341-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4879410PMC
June 2016
20 Reads
3 Citations
4.480 Impact Factor

Identification of gallic acid based glycoconjugates as a novel tubulin polymerization inhibitors.

Org Biomol Chem 2016 Jan 11;14(4):1338-58. Epub 2015 Dec 11.

Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute (CSIR-CDRI), Sector 10, Jankipuram Extension, Sitapur Road, Lucknow 226031, India.

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http://dx.doi.org/10.1039/c5ob02113hDOI Listing
January 2016
10 Reads
3.562 Impact Factor

Characterization of M. tuberculosis SerB2, an essential HAD-family phosphatase, reveals novel properties.

PLoS One 2014 18;9(12):e115409. Epub 2014 Dec 18.

Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow, Uttar Pradesh, 226031, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115409PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4270767PMC
December 2015
23 Reads
1 Citation
3.234 Impact Factor

Mycobacterium tuberculosis class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III exhibits DNA regulated modes of interaction with the sliding DNA β-clamp.

Mol Microbiol 2015 Oct 17;98(1):46-68. Epub 2015 Jul 17.

Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow, Uttar Pradesh, 226031, India.

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http://dx.doi.org/10.1111/mmi.13102DOI Listing
October 2015
7 Reads
4.420 Impact Factor

Mutational analysis of Mycobacterium tuberculosis lysine ɛ-aminotransferase and inhibitor co-crystal structures, reveals distinct binding modes.

Biochem Biophys Res Commun 2015 Jul 17-24;463(1-2):154-60. Epub 2015 May 20.

Molecular & Structural Biology Division, Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow 226031, U.P., India. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2015.05.055DOI Listing
August 2015
1 Read
2.300 Impact Factor

Critical determinants for substrate recognition and catalysis in the M. tuberculosis class II AP-endonuclease/3'-5' exonuclease III.

Biochim Biophys Acta 2015 May 5;1854(5):505-16. Epub 2015 Mar 5.

Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Lucknow, Uttar Pradesh 226031, India. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2015.02.019DOI Listing
May 2015
10 Reads

Tricyclic dihydrobenzoxazepine and tetracyclic indole derivatives can specifically target bacterial DNA ligases and can distinguish them from human DNA ligase I.

Org Biomol Chem 2015 May;13(19):5475-87

From Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Sector10, Jankipuram Extension, Sitapur Road, Uttar Pradesh, Lucknow-226031, India.

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http://dx.doi.org/10.1039/c5ob00439jDOI Listing
May 2015
28 Reads
1 Citation
3.562 Impact Factor

Identification of novel phenyl butenonyl C-glycosides with ureidyl and sulfonamidyl moieties as antimalarial agents.

ACS Med Chem Lett 2014 Aug 2;5(8):878-83. Epub 2014 Jun 2.

Academy of Innovative Science and Research, Medicinal and Process Chemistry Division, Parasitology Division, Pharmacokinetics & Metabolism Division, and Molecular and Structural Biology Division, CSIR-Central Drug Research Institute (CSIR-CDRI) , Sector 10, Jankipuram Extension, Sitapur Road, Lucknow 226031, India.

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http://dx.doi.org/10.1021/ml500211cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4137379PMC
August 2014
13 Reads
3.120 Impact Factor

Dynamics of physical interaction between HIV-1 Nef and ASK1: identifying the interacting motif(s).

PLoS One 2013 14;8(6):e67586. Epub 2013 Jun 14.

Division of Toxicology, Central Drug Research Institute (Council of Scientific & Industrial Research), BS-10/1, Sector-10 Jankipuram Extension, Uttar Pradesh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0067586PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3683068PMC
January 2014
11 Reads
3 Citations
3.234 Impact Factor

Identification of 1-[4-Benzyloxyphenyl)-but-3-enyl]-1H-azoles as New Class of Antitubercular and Antimicrobial Agents.

ACS Med Chem Lett 2013 Oct 26;4(10):958-63. Epub 2013 Aug 26.

Academy of Scientific and Innovative and Research, Division of Medicinal & Process Chemistry, Drug Target Discovery and Development, Microbiology, Molecular and Structural Biology, Pharmaceutics, Sophisticated Analytical Instrumentation Facility, Fermentation Technology, Pharmacokinetics & Metabolism, Central Drug Research Institute , CSIR, Chattar Manzil, Mahatma Gandhi Marg, Lucknow 226001, India.

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http://dx.doi.org/10.1021/ml4002248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4027561PMC
October 2013
11 Reads
3.120 Impact Factor

Crystal structure of the hexachlorocyclohexane dehydrochlorinase (LinA-type2): mutational analysis, thermostability and enantioselectivity.

PLoS One 2012 27;7(11):e50373. Epub 2012 Nov 27.

Environmental Biotechnology Division, CSIR-Indian Institute of Toxicology Research, Mahatma Gandhi Marg, Lucknow, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0050373PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3507683PMC
June 2013
6 Reads
2 Citations
3.234 Impact Factor

Rv3868 (EccA1), an essential component of the Mycobacterium tuberculosis ESX-1 secretion system, is thermostable.

Biochim Biophys Acta 2013 Jun 13;1834(6):1181-6. Epub 2013 Feb 13.

CSIR-Central Drug Research Institute, Mahatma Gandhi Marg, Lucknow, India.

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http://dx.doi.org/10.1016/j.bbapap.2013.02.004DOI Listing
June 2013
6 Reads

M. tuberculosis sliding β-clamp does not interact directly with the NAD+-dependent DNA ligase.

PLoS One 2012 24;7(4):e35702. Epub 2012 Apr 24.

Molecular and Structural Biology Division, Central Drug Research Institute (Council of Scientific and Industrial Research), Lucknow, Uttar Pradesh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035702PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335792PMC
August 2012
2 Reads
4 Citations
3.234 Impact Factor

Mechanism of inhibition of the ATPase domain of human topoisomerase IIα by 1,4-benzoquinone, 1,2-naphthoquinone, 1,4-naphthoquinone, and 9,10-phenanthroquinone.

Toxicol Sci 2012 Apr 4;126(2):372-90. Epub 2012 Jan 4.

Systems Toxicology and Health Risk Assessment Group, CSIR-Indian Institute of Toxicology Research, Lucknow-226001, Uttar Pradesh, India.

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http://dx.doi.org/10.1093/toxsci/kfr345DOI Listing
April 2012
8 Reads
5 Citations

A novel dimer-tetramer transition captured by the crystal structure of the HIV-1 Nef.

PLoS One 2011 2;6(11):e26629. Epub 2011 Nov 2.

Toxicology Division, Central Drug Research Institute, Council of Scientific & Industrial Research, Chattar Manzil, Mahatma Gandhi Marg, Lucknow, Uttar Pradesh, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0026629PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206816PMC
March 2012
2 Reads
8 Citations
3.234 Impact Factor

Structural biology of Mycobacterium tuberculosis proteins: the Indian efforts.

Tuberculosis (Edinb) 2011 Sep 22;91(5):456-68. Epub 2011 Apr 22.

Molecular and Structural Biology Division, Central Drug Research Institute, CSIR, Chattar Manzil Palace, MG Road, Lucknow 226001, India.

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http://dx.doi.org/10.1016/j.tube.2011.03.004DOI Listing
September 2011
6 Reads
2 Citations
2.711 Impact Factor

Exploring the positional importance of aromatic residues and lysine in the interactions of peptides with the Plasmodium falciparum Hsp70-1.

Biochim Biophys Acta 2010 Nov 21;1804(11):2146-52. Epub 2010 Aug 21.

Central Drug Research Institute, CSIR, Lucknow, India.

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http://dx.doi.org/10.1016/j.bbapap.2010.08.007DOI Listing
November 2010
3 Reads
1 Citation

Ligand-induced structural transitions, mutational analysis, and 'open' quaternary structure of the M. tuberculosis feast/famine regulatory protein (Rv3291c).

J Mol Biol 2009 Oct 3;392(4):1007-19. Epub 2009 Aug 3.

Molecular and Structural Biology Division, Central Drug Research Institute, P.O. Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow 226001, India.

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http://dx.doi.org/10.1016/j.jmb.2009.07.084DOI Listing
October 2009
5 Reads
6 Citations
4.333 Impact Factor

Hsp70-1 from Plasmodium falciparum: protein stability, domain analysis and chaperone activity.

Biophys Chem 2009 Jun 16;142(1-3):55-64. Epub 2009 Mar 16.

Molecular & Structural Biology Division, Central Drug Research Institute, P.O. Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow-226001, India.

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http://dx.doi.org/10.1016/j.bpc.2009.03.006DOI Listing
June 2009
2 Reads
4 Citations
1.990 Impact Factor

Interactions of the M. tuberculosis UsfX with the cognate sigma factor SigF and the anti-anti sigma factor RsfA.

Biochim Biophys Acta 2009 Mar 27;1794(3):541-53. Epub 2008 Nov 27.

Molecular and Structural Biology Division, Central Drug Research Institute, P.O. Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow-226001, India.

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http://dx.doi.org/10.1016/j.bbapap.2008.11.007DOI Listing
March 2009
4 Reads
2 Citations

Characterization of Rv3868, an essential hypothetical protein of the ESX-1 secretion system in Mycobacterium tuberculosis.

J Biol Chem 2008 Dec 30;283(52):36532-41. Epub 2008 Oct 30.

Molecular and Structural Biology Division, Central Drug Research Institute, P.O. Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow-226001, India.

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http://dx.doi.org/10.1074/jbc.M807144200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2662308PMC
December 2008
2 Reads
9 Citations
4.573 Impact Factor

Cloning, purification and comparative structural analysis of two hypothetical proteins from Mycobacterium tuberculosis found in the human granuloma during persistence and highly up-regulated under carbon-starvation conditions.

Protein Expr Purif 2008 Nov 2;62(1):64-74. Epub 2008 Jul 2.

Molecular & Structural Biology Division, Central Drug Research Institute, Chattar Manzil, Mahatma Gandhi Marg, Lucknow, Uttar Pradesh 226001, India.

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http://dx.doi.org/10.1016/j.pep.2008.06.011DOI Listing
November 2008
1 Read
2 Citations
1.700 Impact Factor

Mycobacterium tuberculosis UsfX (Rv3287c) exhibits novel nucleotide binding and hydrolysis properties.

Biochem Biophys Res Commun 2008 Oct 21;375(3):465-70. Epub 2008 Aug 21.

Molecular & Structural Biology Division, Central Drug Research Institute, P.O. Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow, Uttar Pradesh 226001, India.

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http://dx.doi.org/10.1016/j.bbrc.2008.08.043DOI Listing
October 2008
7 Reads
1 Citation
2.300 Impact Factor

Crystal structures of the Mycobacterium tuberculosis secretory antigen alanine dehydrogenase (Rv2780) in apo and ternary complex forms captures "open" and "closed" enzyme conformations.

Proteins 2008 Aug;72(3):1089-95

Molecular and Structural Biology Division, Central Drug Research Institute, Lucknow, India.

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http://dx.doi.org/10.1002/prot.22101DOI Listing
August 2008
2 Reads
9 Citations
2.630 Impact Factor

NAD(+)-dependent DNA ligase: a novel target waiting for the right inhibitor.

Med Res Rev 2008 Jul;28(4):545-68

Medicinal & Process Chemistry Division, Central Drug Research Institute, Chattar Manzil, P.O. Box 173, Mahatma Gandhi Marg, Lucknow-226001, India.

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http://dx.doi.org/10.1002/med.20114DOI Listing
July 2008
2 Reads
8 Citations
8.431 Impact Factor

Overexpression, purification, crystallization and preliminary X-ray analysis of Rv2780 from Mycobacterium tuberculosis H37Rv.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2008 May 5;64(Pt 5):367-70. Epub 2008 Apr 5.

Molecular and Structural Biology Division, Central Drug Research Institute, PO Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow 226001, India.

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http://dx.doi.org/10.1107/S1744309108007653DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2376397PMC
May 2008
4 Reads
1 Citation
0.570 Impact Factor

Mechanistic insights from the crystal structures of a feast/famine regulatory protein from Mycobacterium tuberculosis H37Rv.

Nucleic Acids Res 2007 25;35(21):7324-35. Epub 2007 Oct 25.

Molecular & Structural Biology Division, Central Drug Research Institute, P.O. Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow-226001, India.

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http://dx.doi.org/10.1093/nar/gkm850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2175373PMC
January 2008
3 Reads
12 Citations
9.112 Impact Factor

Purification, crystallization and preliminary structural analysis of nucleoside diphosphate kinase from Bacillus anthracis.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2007 Dec 30;63(Pt 12):1084-6. Epub 2007 Nov 30.

Molecular and Structural Biology Division, Central Drug Research Institute, PO Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow 226 001, India.

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http://dx.doi.org/10.1107/S1744309107061118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2344099PMC
December 2007
8 Reads
0.570 Impact Factor

NAD+-dependent DNA ligase (Rv3014c) from Mycobacterium tuberculosis: novel structure-function relationship and identification of a specific inhibitor.

Proteins 2007 Oct;69(1):97-111

Molecular and Structural Biology Division, Central Drug Research Institute, Lucknow 226001, Uttar Pradesh, India.

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http://dx.doi.org/10.1002/prot.21457DOI Listing
October 2007
28 Reads
11 Citations
2.630 Impact Factor

Direct evidence for a glutamate switch necessary for substrate recognition: crystal structures of lysine epsilon-aminotransferase (Rv3290c) from Mycobacterium tuberculosis H37Rv.

J Mol Biol 2006 Oct 11;362(5):877-86. Epub 2006 Aug 11.

Molecular and Structural Biology Division, Central Drug Research Institute, Chattar Manzil, Mahatma Gandhi Marg, Lucknow-226001, India.

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http://dx.doi.org/10.1016/j.jmb.2006.08.019DOI Listing
October 2006
1 Read
6 Citations
4.333 Impact Factor

Overexpression, purification and crystallization of lysine epsilon-aminotransferase (Rv3290c) from Mycobacterium tuberculosis H37Rv.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 Jun 31;62(Pt 6):572-5. Epub 2006 May 31.

Molecular and Structural Biology Division, Central Drug Research Institute, PO Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow 226001, India.

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http://dx.doi.org/10.1107/S1744309106016824DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2243093PMC
June 2006
2 Reads
3 Citations
0.570 Impact Factor

Mycobacterium tuberculosis NAD+-dependent DNA ligase is selectively inhibited by glycosylamines compared with human DNA ligase I.

Nucleic Acids Res 2005 15;33(22):7090-101. Epub 2005 Dec 15.

Molecular and Structural Biology Division, Central Drug Research Institute, PO Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow 226001, India.

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http://dx.doi.org/10.1093/nar/gki1006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1316110PMC
January 2006
9 Reads
10 Citations
9.112 Impact Factor

NAD+-dependent DNA Ligase (Rv3014c) from Mycobacterium tuberculosis. Crystal structure of the adenylation domain and identification of novel inhibitors.

J Biol Chem 2005 Aug 17;280(34):30273-81. Epub 2005 May 17.

Division Molecular and Structural Biology, Central Drug Research Institute, Chattar Manzil, Mahatma Gandhi Marg, Lucknow-226001, India.

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http://dx.doi.org/10.1074/jbc.M503780200DOI Listing
August 2005
28 Reads
19 Citations
4.573 Impact Factor

Characterization of the HslU chaperone affinity for HslV protease.

Protein Sci 2005 May 31;14(5):1357-62. Epub 2005 Mar 31.

Max-Planck-Institut für Biochemie, Martinsried, Germany.

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http://dx.doi.org/10.1110/ps.04970405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2253264PMC
May 2005
20 Reads
6 Citations
2.854 Impact Factor

Cloning, expression, purification and crystallization of a transcriptional regulatory protein (Rv3291c) from Mycobacterium tuberculosis H37Rv.

Acta Crystallogr D Biol Crystallogr 2004 Oct 23;60(Pt 10):1874-6. Epub 2004 Sep 23.

Molecular and Structural Biology Division, Central Drug Research Institute, PO Box 173, Chattar Manzil Palace, Mahatma Gandhi Marg, Lucknow 226001 (U.P.), India.

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http://dx.doi.org/10.1107/S0907444904016397DOI Listing
October 2004
4 Reads
2 Citations
7.232 Impact Factor

Isolation and characterization of the prokaryotic proteasome homolog HslVU (ClpQY) from Thermotoga maritima and the crystal structure of HslV.

Biophys Chem 2003 ;100(1-3):437-52

Abteilung Strukturforschung, Max-Planck-Institut für Biochemie, Am Klopferspitz 18a, D-82152 Planegg-Martinsried, Germany.

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December 2003
3 Reads
8 Citations
1.990 Impact Factor

Functional interactions of HslV (ClpQ) with the ATPase HslU (ClpY).

Proc Natl Acad Sci U S A 2002 May;99(11):7396-401

Abteilung Strukturforschung, Max-Planck-Institut für Biochemie, Am Klopferspitz 18a, D-82152 Planegg-Martinsried, Germany.

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http://dx.doi.org/10.1073/pnas.102188799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC124242PMC
May 2002
5 Reads
21 Citations
9.810 Impact Factor