Dr. Mauricio Carrillo-Tripp, PhD - Biomolecular Diversity Laboratory,  Cinvestav - Associate Profesor

Dr. Mauricio Carrillo-Tripp

PhD

Biomolecular Diversity Laboratory, Cinvestav

Associate Profesor

Irapuato, Guanajuato | México

Main Specialties: Biology

Additional Specialties: Computational Biophysics

ORCID logohttps://orcid.org/0000-0003-0060-6486

Dr. Mauricio Carrillo-Tripp, PhD - Biomolecular Diversity Laboratory,  Cinvestav - Associate Profesor

Dr. Mauricio Carrillo-Tripp

PhD

Introduction

Primary Affiliation: Biomolecular Diversity Laboratory, Cinvestav - Irapuato, Guanajuato , México

Specialties:

Additional Specialties:

Research Interests:


View Dr. Mauricio Carrillo-Tripp’s Resume / CV

Education

Jun 1998 - Jun 2005
UAEM-UNAM
PhD, Biophysics
Physics

Experience

Jan 2010
Centro de Investigación y de Estudios Avanzados Unidad Monterrey
Principal Investigator
BIOMOLECULAR DIVERSITY

Publications

31Publications

508Reads

374Profile Views

164PubMed Central Citations

VIPERdb: A Tool for Virus Research.

Annu Rev Virol 2018 09;5(1):477-488

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California 92037, USA; email:

The VIrus Particle ExploreR database (VIPERdb) ( http://viperdb.scripps.edu ) is a database and web portal for primarily icosahedral virus capsid structures that integrates structure-derived information with visualization and analysis tools accessed through a set of web interfaces. Our aim in developing VIPERdb is to provide comprehensive structure-derived information on viruses comprising simple to detailed attributes such as size (diameter), architecture ( T number), genome type, taxonomy, intersubunit association energies, and surface-accessible residues. In addition, a number of web-based tools are provided to enable users to interact with the structures and compare and contrast structure-derived properties between different viruses. Recently, we have constructed a series of data visualizations using modern JavaScript charting libraries such as Google Charts that allow users to explore trends and gain insights based on the various data available in the database. Furthermore, we now include helical viruses and nonicosahedral capsids by implementing modified procedures for data curation and analysis. This article provides an up-to-date overview of VIPERdb, describing various data and tools that are currently available and how to use them to facilitate structure-based bioinformatics analysis of virus capsids.

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http://dx.doi.org/10.1146/annurev-virology-092917-043405DOI Listing
September 2018
1 Read
5.345 Impact Factor

HTMoL: full-stack solution for remote access, visualization, and analysis of molecular dynamics trajectory data.

J Comput Aided Mol Des 2018 Aug 6;32(8):869-876. Epub 2018 Aug 6.

Departamento de Computación, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Ciudad de México, México.

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http://dx.doi.org/10.1007/s10822-018-0141-yDOI Listing
August 2018
7 Reads
2.990 Impact Factor

CapsidMesh: Atomic-detail structured mesh representation of icosahedral viral capsids and the study of their mechanical properties.

Int J Numer Method Biomed Eng 2018 Jul 22;34(7):e2991. Epub 2018 Apr 22.

Laboratorio de la Diversidad Biomolecular, Centro de Investigación y de Estudios Avanzados Unidad Monterrey, Vía del Conocimiento 201, Parque PIIT,, C.P. 66600, Apodaca, Nuevo León, México.

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http://dx.doi.org/10.1002/cnm.2991DOI Listing
July 2018
7 Reads
1.542 Impact Factor

Porcine circovirus type 2 protective epitope densely carried by chimeric papaya ringspot virus-like particles expressed in Escherichia coli as a cost-effective vaccine manufacture alternative.

Biotechnol Appl Biochem 2017 May 20;64(3):406-414. Epub 2016 Apr 20.

Unidad de Biotecnología Médica y Farmacéutica, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C., Normalistas 800, Colinas de la Normal, Guadalajara, Jalisco 44270, México.

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http://dx.doi.org/10.1002/bab.1491DOI Listing
May 2017
37 Reads
1.362 Impact Factor

Structure based sequence analysis of viral and cellular protein assemblies.

J Struct Biol 2016 12 29;196(3):299-308. Epub 2016 Jul 29.

Biomolecular Diversity Laboratory, Centro de Investigación y Estudios Avanzados del Instituto Politécnico Nacional, Mexico. Electronic address:

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http://dx.doi.org/10.1016/j.jsb.2016.07.013DOI Listing
December 2016
22 Reads
3.231 Impact Factor

Highly efficient strategy for the heterologous expression and purification of soluble Cowpea chlorotic mottle virus capsid protein and in vitro pH-dependent assembly of virus-like particles.

J Virol Methods 2015 Dec 2;225:23-9. Epub 2015 Sep 2.

Biomolecular Diversity Laboratory, Unidad de Genómica Avanzada, Centro de Investigación y Estudios Avanzados del Instituto Politécnico Nacional, Unidad Irapuato, Mexico. Electronic address:

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http://dx.doi.org/10.1016/j.jviromet.2015.08.023DOI Listing
December 2015
33 Reads
1 Citation
1.883 Impact Factor

Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.

BMC Evol Biol 2015 Jun 10;15:107. Epub 2015 Jun 10.

Evolution of Metabolic Diversity, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Km 9.6 Libramiento Norte, Carretera Irapuato - León, CP 36821, Irapuato, México.

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http://dx.doi.org/10.1186/s12862-015-0378-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462073PMC
June 2015
96 Reads
5 Citations
3.370 Impact Factor

CapsidMaps: protein-protein interaction pattern discovery platform for the structural analysis of virus capsids using Google Maps.

J Struct Biol 2015 Apr 16;190(1):47-55. Epub 2015 Feb 16.

Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1016/j.jsb.2015.02.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750372PMC
April 2015
30 Reads
1 Citation
3.231 Impact Factor

Evolution of substrate specificity in a recipient's enzyme following horizontal gene transfer.

Mol Biol Evol 2013 Sep 25;30(9):2024-34. Epub 2013 Jun 25.

Evolution of Metabolic Diversity Laboratory, Laboratorio Nacional de Genómica para la Biodiversidad (Langebio), Cinvestav-IPN, Irapuato, México.

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http://dx.doi.org/10.1093/molbev/mst115DOI Listing
September 2013
32 Reads
13 Citations
9.110 Impact Factor

Immune response to a potyvirus with exposed amino groups available for chemical conjugation.

Virol J 2012 Mar 27;9:75. Epub 2012 Mar 27.

Unidad de Biotecnología Médica y Farmacéutica, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco, Normalistas 800, Colinas de la Normal, Guadalajara, Jalisco 44270, México.

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http://dx.doi.org/10.1186/1743-422X-9-75DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3359163PMC
March 2012
33 Reads
1 Citation
2.181 Impact Factor

VIPERdb2: an enhanced and web API enabled relational database for structural virology.

Nucleic Acids Res 2009 Jan 3;37(Database issue):D436-42. Epub 2008 Nov 3.

Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/nar/gkn840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686430PMC
January 2009
24 Reads
106 Citations
9.112 Impact Factor

A novel method to map and compare protein-protein interactions in spherical viral capsids.

Proteins 2008 Nov;73(3):644-55

Department of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1002/prot.22088DOI Listing
November 2008
27 Reads
5 Citations
2.630 Impact Factor

Ion hydration in nanopores and the molecular basis of selectivity.

Biophys Chem 2006 Dec 3;124(3):243-50. Epub 2006 May 3.

Chemistry Department, Wabash College, P.O. Box 352, Crawfordsville, IN 47933, USA.

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http://dx.doi.org/10.1016/j.bpc.2006.04.012DOI Listing
December 2006
28 Reads
2 Citations
1.990 Impact Factor

Evidence for a mechanism by which omega-3 polyunsaturated lipids may affect membrane protein function.

Biochemistry 2005 Aug;44(30):10164-9

Department of Chemistry, Wabash College, 301 West Wabash Avenue, Crawfordsville, Indiana 47933, USA.

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http://dx.doi.org/10.1021/bi050822eDOI Listing
August 2005
30 Reads
22 Citations
3.020 Impact Factor

Minimalist molecular model for nanopore selectivity.

Phys Rev Lett 2004 Oct 14;93(16):168104. Epub 2004 Oct 14.

Facultad de Ciencias, Universidad Autónoma del Estado de Morelos, Avenida Universidad 1001, 62210 Cuernavaca, Morelos, México.

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http://dx.doi.org/10.1103/PhysRevLett.93.168104DOI Listing
October 2004
27 Reads
5 Citations
7.512 Impact Factor

VIPERdb2: an enhanced and web API enabled relational database for structural virology

M. Carrillo-Tripp, C. M. Shepherd, I. A. Borelli, S. Venkataraman, G. Lander, P. Natarajan, J. E. Johnson, C. L. Brooks, V. S. Reddy, 2009, 'VIPERdb2: an enhanced and web API enabled relational database for structural virology', Nucleic Acids Research, vol. 37, no. Database, pp. D436-D442

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1969
5 Reads

Molecular Action Mechanism of Amphotericin B and Structural Analogs on Biological Membranes

Mauricio Carrillo-Tripp, Alex H. de Vries, Rogelio Hernández, Cristina Vargas, Humberto Saint-Martin, Ivan Ortega-Blake, 2010, 'Molecular Action Mechanism of Amphotericin B and Structural Analogs on Biological Membranes', Biophysical Journal, vol. 98, no. 3

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1969
6 Reads

Minimalist Molecular Model for Nanopore Selectivity

Mauricio Carrillo-Tripp, Humberto Saint-Martin, Iván Ortega-Blake, 2004, 'Minimalist Molecular Model for Nanopore Selectivity', Physical Review Letters, vol. 93, no. 16

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1969
5 Reads

Ion hydration in nanopores and the molecular basis of selectivity

Mauricio Carrillo-Tripp, María Luisa San-Román, Jorge Hernańdez-Cobos, Humberto Saint-Martin, Iván Ortega-Blake, 2006, 'Ion hydration in nanopores and the molecular basis of selectivity', Biophysical Chemistry, vol. 124, no. 3, pp. 243-250

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1969
5 Reads

Immune response to a potyvirus with exposed amino groups available for chemical conjugation

Carlos A Manuel-Cabrera, Ana Marquez-Aguirre, Rodolfo Hernandez-Gutierrez, Pablo C Ortiz-Lazareno, Gabriela Chavez-Calvillo, Mauricio Carrillo-Tripp, Laura Silva-Rosales, Abel Gutierrez-Ortega, 2012, 'Immune response to a potyvirus with exposed amino groups available for chemical conjugation', Vi

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1969
5 Reads

Evidence for a Mechanism by Which ω-3 Polyunsaturated Lipids May Affect Membrane Protein Function†

Mauricio Carrillo-Tripp, Scott E. Feller, 2005, 'Evidence for a Mechanism by Which ω-3 Polyunsaturated Lipids May Affect Membrane Protein Function†', Biochemistry, vol. 44, no. 30, pp. 10164-10169

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1969
5 Reads

Aggregation States Driven by Dipole Interactions Regulates Action Mechanism of Polyene Antibiotics

Mauricio Carrillo-Tripp, Xavier Periole, Acione García-González, Marcel Espinosa-Caballero, Cristina Vargas-González, Alex H. de Vries, Iván Ortega-Blake, 2013, 'Aggregation States Driven by Dipole Interactions Regulates Action Mechanism of Polyene Antibiotics', Biophysical Journal, vol. 104,

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1969
5 Reads

A novel method to map and compare protein-protein interactions in spherical viral capsids

Mauricio Carrillo-Tripp, Charles L. Brooks, Vijay S. Reddy, 2008, 'A novel method to map and compare protein-protein interactions in spherical viral capsids', Proteins: Structure, Function, and Bioinformatics, vol. 73, no. 3, pp. 644-655

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1969
5 Reads

A comparative study of the hydration of Na[sup +] and K[sup +] with refined polarizable model potentials

Mauricio Carrillo-Tripp, Humberto Saint-Martin, Iván Ortega-Blake, 2003, 'A comparative study of the hydration of Na[sup +] and K[sup +] with refined polarizable model potentials', The Journal of Chemical Physics, vol. 118, no. 15, p. 7062

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1969
5 Reads

A Theoretical Study of the Hydration of Li+ by Monte Carlo Simulations with Refined Ab Initio Based Model Potentials

María Luisa San-Román, Mauricio Carrillo-Tripp, Humberto Saint-Martin, Jorge Hernández-Cobos, Iván Ortega-Blake, 2006, 'A Theoretical Study of the Hydration of Li+ by Monte Carlo Simulations with Refined Ab Initio Based Model Potentials', Theoretical Chemistry Accounts, vol. 115, no. 2-3, pp.

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1969
5 Reads

Top co-authors

Vijay S Reddy
Vijay S Reddy

The Scripps Research Institute

5
Charles L Brooks
Charles L Brooks

University of Michigan

4
Laura Silva-Rosales
Laura Silva-Rosales

Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional

4
John E Johnson
John E Johnson

The Scripps Research Institute

2