Publications by authors named "Lounes Chikhi"

53Publications

A reference-free approach to analyze RADseq data using standard Next Generation Sequencing toolkits.

Mol Ecol Resour 2021 Jan 12. Epub 2021 Jan 12.

Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, DK-2200, Copenhagen N, Denmark.

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January 2021

Genetic consequences of social structure in the golden-crowned sifaka.

Heredity (Edinb) 2020 Nov 13;125(5):328-339. Epub 2020 Aug 13.

Instituto Gulbenkian de Ciência, Rua da Quinta Grande, 6, 2780-156, Oeiras, Portugal.

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November 2020

Beyond multiregional and simple out-of-Africa models of human evolution.

Nat Ecol Evol 2019 10;3(10):1370-1372

Research Department of Genetics, Evolution and Environment, University College London, London, UK.

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October 2019

Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle.

BMC Genomics 2019 May 3;20(1):334. Epub 2019 May 3.

CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal.

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May 2019

The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure.

Heredity (Edinb) 2018 12 7;121(6):663-678. Epub 2018 Oct 7.

Laboratoire Évolution & Diversité Biologique (EDB UMR 5174), Université de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bât. 4R1, 31062, Toulouse cedex 9, France.

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December 2018

Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes.

J Math Biol 2019 01 20;78(1-2):189-224. Epub 2018 Jul 20.

Institut de Mathématiques de Toulouse, Université de Toulouse, Institut National des Sciences Appliquées, 31077, Toulouse, France.

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January 2019

Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

Trends Ecol Evol 2018 08 11;33(8):582-594. Epub 2018 Jul 11.

Laboratoire Évolution & Diversité Biologique (EDB UMR 5174), Université de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bat 4R1, 31062 Toulouse cedex 9, France; Instituto Gulbenkian de Ciência, P-2780-156, Oeiras, Portugal.

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August 2018

A southern African origin and cryptic structure in the highly mobile plains zebra.

Nat Ecol Evol 2018 03 22;2(3):491-498. Epub 2018 Jan 22.

Department of Biology, Section for Computational and RNA Biology, University of Copenhagen, Copenhagen, Denmark.

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March 2018

Genetic analyses favour an ancient and natural origin of elephants on Borneo.

Sci Rep 2018 01 17;8(1):880. Epub 2018 Jan 17.

Instituto Gulbenkian de Ciência, Rua da Quinta Grande, 6, P-2780-156, Oeiras, Portugal.

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January 2018

The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice.

Heredity (Edinb) 2018 01 8;120(1):13-24. Epub 2017 Nov 8.

Université de Toulouse, Institut National des Sciences Appliquées, Institut de Mathématiques de Toulouse, F-31077, Toulouse, France.

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January 2018

Climate change and human colonization triggered habitat loss and fragmentation in Madagascar.

Mol Ecol 2017 Oct 28;26(19):5203-5222. Epub 2017 Jun 28.

Instituto Gulbenkian de Ciênca, Oeiras, Portugal.

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October 2017

Comparing maternal genetic variation across two millennia reveals the demographic history of an ancient human population in southwest Turkey.

R Soc Open Sci 2016 Feb 17;3(2):150250. Epub 2016 Feb 17.

Department of Imaging & Pathology, University of Leuven, Leuven, Belgium; Laboratory of Forensic Genetics and Molecular Archaeology, UZ Leuven, Belgium.

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February 2016

Reassessing the Evolutionary History of the 17q21 Inversion Polymorphism.

Genome Biol Evol 2015 Nov 11;7(12):3239-48. Epub 2015 Nov 11.

Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal Instituto de Patologia e Imunologia Molecular da Universidade do Porto-IPATIMUP, Portugal.

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November 2015

STR-based genetic structure of the Berber population of Bejaia (Northern Algeria) and its relationships to various ethnic groups.

Gene 2015 Dec 5;574(1):140-8. Epub 2015 Aug 5.

Laboratoire de Biochimie Appliquée, Faculté des Sciences de la Nature et de la Vie, Université de Bejaia, 06000 Algeria. Electronic address:

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December 2015

Demographic inference using genetic data from a single individual: Separating population size variation from population structure.

Theor Popul Biol 2015 Sep 25;104:46-58. Epub 2015 Jun 25.

CNRS, Université Paul Sabatier, ENFA, UMR 5174 EDB (Laboratoire Évolution & Diversité Biologique), F-31062 Toulouse, France; Université de Toulouse, UPS, EDB, F-31062 Toulouse, France; Instituto Gulbenkian de Ciência, P-2780-156 Oeiras, Portugal. Electronic address:

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September 2015

On some genetic consequences of social structure, mating systems, dispersal, and sampling.

Proc Natl Acad Sci U S A 2015 Jun 16;112(26):E3318-26. Epub 2015 Jun 16.

Instituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal; CNRS, Université Paul Sabatier, Ecole Nationale de Formation Agronomique, UMR5174 EDB (Laboratoire Évolution & Diversité Biologique), F-31062 Toulouse, France.

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June 2015