Publications by authors named "Joshua L Cherry"

20Publications

Selection-Driven Gene Inactivation in Salmonella.

Authors:
Joshua L Cherry

Genome Biol Evol 2020 03;12(3):18-34

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland.

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http://dx.doi.org/10.1093/gbe/evaa010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7144821PMC
March 2020

Methylation-Induced Hypermutation in Natural Populations of Bacteria.

Authors:
Joshua L Cherry

J Bacteriol 2018 12 26;200(24). Epub 2018 Nov 26.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA

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http://jb.asm.org/lookup/doi/10.1128/JB.00371-18
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http://dx.doi.org/10.1128/JB.00371-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256030PMC
December 2018

A practical exact maximum compatibility algorithm for reconstruction of recent evolutionary history.

Authors:
Joshua L Cherry

BMC Bioinformatics 2017 Feb 23;18(1):127. Epub 2017 Feb 23.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.

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http://dx.doi.org/10.1186/s12859-017-1520-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324209PMC
February 2017

Inbreeding and asexuality: a response to Szulkin et al.

Authors:
Joshua L Cherry

Trends Ecol Evol 2013 Dec 2;28(12):683. Epub 2013 Nov 2.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01695347130020
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http://dx.doi.org/10.1016/j.tree.2013.08.001DOI Listing
December 2013

Why does a protein's evolutionary rate vary over time?

Genome Biol Evol 2013 ;5(3):494-503

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1093/gbe/evt024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622301PMC
August 2013

Complex patterns of human antisera reactivity to novel 2009 H1N1 and historical H1N1 influenza strains.

PLoS One 2012 17;7(7):e39435. Epub 2012 Jul 17.

Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0039435PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398940PMC
March 2013

Projection of seasonal influenza severity from sequence and serological data.

PLoS Curr 2010 Dec 3;2:RRN1200. Epub 2010 Dec 3.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA; Fogarty International Center, National Institutes of Health, Bethesda, MD, USA and National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health.

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http://dx.doi.org/10.1371/currents.RRN1200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2998708PMC
December 2010

Expression level, evolutionary rate, and the cost of expression.

Authors:
Joshua L Cherry

Genome Biol Evol 2010 30;2:757-69. Epub 2010 Sep 30.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1093/gbe/evq059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2979011PMC
February 2011

Highly expressed and slowly evolving proteins share compositional properties with thermophilic proteins.

Authors:
Joshua L Cherry

Mol Biol Evol 2010 Mar 12;27(3):735-41. Epub 2009 Nov 12.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1093/molbev/msp270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2822289PMC
March 2010

Selection, subdivision and extinction and recolonization.

Authors:
Joshua L Cherry

Genetics 2004 Feb;166(2):1105-14

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1470724PMC
http://dx.doi.org/10.1534/genetics.166.2.1105DOI Listing
February 2004

Selection in a subdivided population with local extinction and recolonization.

Authors:
Joshua L Cherry

Genetics 2003 Jun;164(2):789-95

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462581PMC
June 2003

Selection in a subdivided population with dominance or local frequency dependence.

Authors:
Joshua L Cherry

Genetics 2003 Apr;163(4):1511-8

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462507PMC
April 2003

Genome size and operon content.

Authors:
Joshua L Cherry

J Theor Biol 2003 Apr;221(3):401-10

Department of Biology, University of Utah, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1006/jtbi.2003.3194DOI Listing
April 2003

A diffusion approximation for selection and drift in a subdivided population.

Genetics 2003 Jan;163(1):421-8

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462403PMC
January 2003

Deleterious mutation and the evolution of eusociality.

Authors:
Joshua L Cherry

Evolution 2002 Dec;56(12):2359-67

Department of Biology, University of Utah, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1111/j.0014-3820.2002.tb00161.xDOI Listing
December 2002

Islands, equilibria, and speciation.

Science 2002 May;296(5570):975

Department of Organismic, and Evolutionary Biology, Harvard University, Cambridge, MA 02140, USA.

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http://dx.doi.org/10.1126/science.296.5570.975aDOI Listing
May 2002