Jarrod Chapman

Jarrod Chapman

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Jarrod Chapman

Jarrod Chapman

Publications by authors named "Jarrod Chapman"

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31Publications

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Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei.

BMC Evol Biol 2016 11 11;16(1):247. Epub 2016 Nov 11.

Department of Biology, Heinrich-Heine-Universität Düsseldorf, Universitätsstr. 1, 40225, Düsseldorf, Germany.

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http://dx.doi.org/10.1186/s12862-016-0820-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5106770PMC
November 2016

Genome evolution in the allotetraploid frog Xenopus laevis.

Nature 2016 10;538(7625):336-343

University of California, Berkeley, Department of Molecular and Cell Biology and Center for Integrative Genomics, Life Sciences Addition #3200, Berkeley, California 94720-3200, USA.

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http://dx.doi.org/10.1038/nature19840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313049PMC
October 2016

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.

New Phytol 2015 Jan 23;205(1):402-14. Epub 2014 Sep 23.

Department of Integrative Biology and Institute for Cellular and Molecular Biology, University of Texas at Austin, 1 University Station C0990, Austin, TX, 78712, USA; Division of Science and Environmental Policy, California State University, Monterey Bay, 100 Campus Center, Seaside, CA, 93955, USA.

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http://dx.doi.org/10.1111/nph.13027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4265272PMC
January 2015

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

Meraculous: de novo genome assembly with short paired-end reads.

PLoS One 2011 18;6(8):e23501. Epub 2011 Aug 18.

U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023501PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3158087PMC
December 2011

The dynamic genome of Hydra.

Nature 2010 Mar 14;464(7288):592-6. Epub 2010 Mar 14.

US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

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http://dx.doi.org/10.1038/nature08830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502PMC
March 2010

Early evolution of the LIM homeobox gene family.

BMC Biol 2010 Jan 18;8. Epub 2010 Jan 18.

Center for Integrative Genomics and Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1186/1741-7007-8-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2828406PMC
January 2010

Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes.

Mol Biol Evol 2008 Sep 17;25(9):2009-17. Epub 2008 Jul 17.

Center for Information Biology and DDBJ, National Institute of Genetics, Mishima, Japan.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msn154DOI Listing
September 2008

Evolution of complex structures: minicollagens shape the cnidarian nematocyst.

Trends Genet 2008 Sep 3;24(9):431-8. Epub 2008 Aug 3.

Department Biologie II, Ludwig-Maximilians-Universität, D-82152 Planegg-Martinsried, Germany.

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http://dx.doi.org/10.1016/j.tig.2008.07.001DOI Listing
September 2008

Continuous molecular evolution of protein-domain structures by single amino acid changes.

Curr Biol 2007 Jan;17(2):173-8

Department of Structural Biology, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.

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http://linkinghub.elsevier.com/retrieve/pii/S096098220602444
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http://dx.doi.org/10.1016/j.cub.2006.10.063DOI Listing
January 2007

Community structure and metabolism through reconstruction of microbial genomes from the environment.

Nature 2004 Mar 1;428(6978):37-43. Epub 2004 Feb 1.

Department of Environmental Science, Policy and Management, University of California, Berkeley, California 94720, USA.

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http://www.nature.com/articles/nature02340
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http://dx.doi.org/10.1038/nature02340DOI Listing
March 2004

The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.

Science 2002 Dec;298(5601):2157-67

U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

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http://dx.doi.org/10.1126/science.1080049DOI Listing
December 2002

Isothermal strand-displacement amplification applications for high-throughput genomics.

Genomics 2002 Dec;80(6):691-8

United States Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

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http://dx.doi.org/10.1006/geno.2002.7020DOI Listing
December 2002