Publications by authors named "Idan Gabdank"

20Publications

Recompleting the genome.

Genome Res 2019 06 23;29(6):1009-1022. Epub 2019 May 23.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1101/gr.244830.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581061PMC
June 2019

Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in and .

G3 (Bethesda) 2017 10 5;7(10):3295-3303. Epub 2017 Oct 5.

Department of Pathology, Stanford University School of Medicine, California 94305

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http://g3journal.org/lookup/doi/10.1534/g3.117.300141
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http://dx.doi.org/10.1534/g3.117.300141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633380PMC
October 2017

A streamlined tethered chromosome conformation capture protocol.

BMC Genomics 2016 Apr 1;17:274. Epub 2016 Apr 1.

Departments of Pathology and Genetics, Stanford University School of Medicine, Stanford, California, 94304, USA.

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http://dx.doi.org/10.1186/s12864-016-2596-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4818521PMC
April 2016

Gamete-type dependent crossover interference levels in a defined region of Caenorhabditis elegans chromosome V.

G3 (Bethesda) 2014 Jan 10;4(1):117-20. Epub 2014 Jan 10.

Department of Pathology, Stanford University School of Medicine, Stanford, California 94305.

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http://dx.doi.org/10.1534/g3.113.008672DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3887527PMC
January 2014

On topological indices for small RNA graphs.

Comput Biol Chem 2012 Dec 23;41:35-40. Epub 2012 Oct 23.

Department of Computer Science, Ben-Gurion University, 84105 Beer-Sheva, Israel.

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http://dx.doi.org/10.1016/j.compbiolchem.2012.10.004DOI Listing
December 2012

The RNAmute web server for the mutational analysis of RNA secondary structures.

Nucleic Acids Res 2011 Jul 7;39(Web Server issue):W92-9. Epub 2011 Apr 7.

Department of Computer Science, Ben-Gurion University, Beer-Sheva 84105, Israel.

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http://dx.doi.org/10.1093/nar/gkr207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125725PMC
July 2011

FineStr: a web server for single-base-resolution nucleosome positioning.

Bioinformatics 2010 Mar 26;26(6):845-6. Epub 2010 Jan 26.

Department of Computer Science, Ben Gurion University of the Negev, Beer Sheva 84105, Israel.

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http://dx.doi.org/10.1093/bioinformatics/btq030DOI Listing
March 2010

Energy minimization methods applied to riboswitches: a perspective and challenges.

RNA Biol 2010 Jan-Feb;7(1):90-7. Epub 2010 Jan 16.

Department of Computer Science, Ben-Gurion University, Beer-Sheva, Israel.

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http://dx.doi.org/10.4161/rna.7.1.10657DOI Listing
November 2010

Computational identification of three-way junctions in folded RNAs: a case study in Arabidopsis.

In Silico Biol 2008 ;8(2):105-20

Department of Computer Science, Ben-Gurion University, Beer-Sheva 84105, Israel.

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November 2008

In silico design of small RNA switches.

IEEE Trans Nanobioscience 2007 Mar;6(1):4-11

Department of Computer Science, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel.

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http://dx.doi.org/10.1109/tnb.2007.891894DOI Listing
March 2007

Primordia vita. Deconvolution from modern sequences.

Orig Life Evol Biosph 2006 Dec;36(5-6):559-65

Genome Diversity Center, Institute of Evolution, University of Haifa, Haifa 31905, Israel.

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http://link.springer.com/10.1007/s11084-006-9042-5
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http://dx.doi.org/10.1007/s11084-006-9042-5DOI Listing
December 2006

Tracing ancient mRNA hairpins.

J Biomol Struct Dyn 2006 Oct;24(2):163-9

Department of Computer Science, Ben Gurion University of the Negev, P.O.B 653, Be'er Sheva 84105, Israel.

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http://dx.doi.org/10.1080/07391102.2006.10507109DOI Listing
October 2006