Frank M Aarestrup

Frank M Aarestrup

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Frank M Aarestrup

Publications by authors named "Frank M Aarestrup"

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Worldwide human mitochondrial haplogroup distribution from urban sewage.

Sci Rep 2019 Aug 12;9(1):11624. Epub 2019 Aug 12.

Department of Physics of Complex Systems, ELTE Eötvös Loránd University, Pázmány P. s. 1A, Budapest, 1117, Hungary.

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http://dx.doi.org/10.1038/s41598-019-48093-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6690936PMC
August 2019

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Authors:
Robert A Edwards Alejandro A Vega Holly M Norman Maria Ohaeri Kyle Levi Elizabeth A Dinsdale Ondrej Cinek Ramy K Aziz Katelyn McNair Jeremy J Barr Kyle Bibby Stan J J Brouns Adrian Cazares Patrick A de Jonge Christelle Desnues Samuel L Díaz Muñoz Peter C Fineran Alexander Kurilshikov Rob Lavigne Karla Mazankova David T McCarthy Franklin L Nobrega Alejandro Reyes Muñoz German Tapia Nicole Trefault Alexander V Tyakht Pablo Vinuesa Jeroen Wagemans Alexandra Zhernakova Frank M Aarestrup Gunduz Ahmadov Abeer Alassaf Josefa Anton Abigail Asangba Emma K Billings Vito Adrian Cantu Jane M Carlton Daniel Cazares Gyu-Sung Cho Tess Condeff Pilar Cortés Mike Cranfield Daniel A Cuevas Rodrigo De la Iglesia Przemyslaw Decewicz Michael P Doane Nathaniel J Dominy Lukasz Dziewit Bashir Mukhtar Elwasila A Murat Eren Charles Franz Jingyuan Fu Cristina Garcia-Aljaro Elodie Ghedin Kristen M Gulino John M Haggerty Steven R Head Rene S Hendriksen Colin Hill Heikki Hyöty Elena N Ilina Mitchell T Irwin Thomas C Jeffries Juan Jofre Randall E Junge Scott T Kelley Mohammadali Khan Mirzaei Martin Kowalewski Deepak Kumaresan Steven R Leigh David Lipson Eugenia S Lisitsyna Montserrat Llagostera Julia M Maritz Linsey C Marr Angela McCann Shahar Molshanski-Mor Silvia Monteiro Benjamin Moreira-Grez Megan Morris Lawrence Mugisha Maite Muniesa Horst Neve Nam-Phuong Nguyen Olivia D Nigro Anders S Nilsson Taylor O'Connell Rasha Odeh Andrew Oliver Mariana Piuri Aaron J Prussin Ii Udi Qimron Zhe-Xue Quan Petra Rainetova Adán Ramírez-Rojas Raul Raya Kim Reasor Gillian A O Rice Alessandro Rossi Ricardo Santos John Shimashita Elyse N Stachler Lars C Stene Ronan Strain Rebecca Stumpf Pedro J Torres Alan Twaddle MaryAnn Ugochi Ibekwe Nicolás Villagra Stephen Wandro Bryan White Andy Whiteley Katrine L Whiteson Cisca Wijmenga Maria M Zambrano Henrike Zschach Bas E Dutilh

Nat Microbiol 2019 Jul 8. Epub 2019 Jul 8.

Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/s41564-019-0494-6DOI Listing
July 2019

Megaphages infect Prevotella and variants are widespread in gut microbiomes.

Nat Microbiol 2019 04 28;4(4):693-700. Epub 2019 Jan 28.

Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA, USA.

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http://dx.doi.org/10.1038/s41564-018-0338-9DOI Listing
April 2019

Cross-Border Transmission of Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution.

Front Microbiol 2019 6;10:179. Epub 2019 Feb 6.

European Union Reference Laboratory for Antimicrobial Resistance, WHO Collaborating Center for Antimicrobial Resistance in Food Borne Pathogens and Genomics, Research Group for Genomic Epidemiology, National Food Institute, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.3389/fmicb.2019.00179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373457PMC
February 2019

Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System Participants in Identification and Susceptibility Testing of Thermotolerant Campylobacter spp. from 2003 to 2012.

J Clin Microbiol 2018 11 25;56(11). Epub 2018 Oct 25.

WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.1128/JCM.01066-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6204681PMC
November 2018

Molecular epidemiology of virulence and antimicrobial resistance determinants in Klebsiella pneumoniae from hospitalised patients in Kilimanjaro, Tanzania.

Eur J Clin Microbiol Infect Dis 2018 Oct 20;37(10):1901-1914. Epub 2018 Jul 20.

DTU-Food, Centre for Genomic Epidemiology, Technical University of Denmark, Lyngby, Denmark.

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http://dx.doi.org/10.1007/s10096-018-3324-5DOI Listing
October 2018

The Role of Outer Membrane Proteins and Lipopolysaccharides for the Sensitivity of to Antimicrobial Peptides.

Front Microbiol 2018 7;9:2153. Epub 2018 Sep 7.

National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.3389/fmicb.2018.02153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137088PMC
September 2018

Rapid and precise alignment of raw reads against redundant databases with KMA.

BMC Bioinformatics 2018 Aug 29;19(1):307. Epub 2018 Aug 29.

Department of Bioinformatics, Technical University of Denmark, 2800, Kgs Lyngby, Denmark.

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http://dx.doi.org/10.1186/s12859-018-2336-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6116485PMC
August 2018

Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.

Sci Rep 2018 03 7;8(1):4126. Epub 2018 Mar 7.

Research Group for Genomic Epidemiology, Technical University of Denmark, Kgs, Lyngby, Denmark.

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http://dx.doi.org/10.1038/s41598-018-22416-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5841358PMC
March 2018

Epidemiology of Danish subsp. in Fish Farms Using Whole Genome Sequencing.

Front Microbiol 2017 5;8:2411. Epub 2017 Dec 5.

Section for Bacteriology and Pathology, National Veterinary Institute, Technical University of Denmark, Lyngby, Denmark.

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http://dx.doi.org/10.3389/fmicb.2017.02411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723325PMC
December 2017

An Assessment of Different Genomic Approaches for Inferring Phylogeny of .

Front Microbiol 2017 29;8:2351. Epub 2017 Nov 29.

European Union Reference Laboratory for Antimicrobial Resistance, National Food Institute, WHO Collaborating Center for Antimicrobial Resistance in Food Borne Pathogens and Genomics, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://journal.frontiersin.org/article/10.3389/fmicb.2017.02
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http://dx.doi.org/10.3389/fmicb.2017.02351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712588PMC
November 2017

Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.

PLoS One 2017 19;12(1):e0169324. Epub 2017 Jan 19.

National Food Institute, Technical University of Denmark, Research Group for Genomic Epidemiology, WHO Collaborating Center for Antimicrobial Resistance in Foodborne Pathogens and Genomics and European Union Reference Laboratory for Antimicrobial Resistance, Kgs. Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0169324PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5245877PMC
August 2017

The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010.

PLoS One 2016 18;11(5):e0155691. Epub 2016 May 18.

National Food Institute, Technical University of Denmark, Research Group for Genomic Epidemiology, WHO Collaborating Center for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kgs. Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0155691PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4871476PMC
July 2017

Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections.

PLoS One 2016 26;11(5):e0156212. Epub 2016 May 26.

National Food Institute, Technical University of Denmark, WHO Collaborating Center for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kgs. Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0156212PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881965PMC
July 2017

Patterns of infections, aetiological agents and antimicrobial resistance at a tertiary care hospital in northern Tanzania.

Trop Med Int Health 2017 04 3;22(4):454-464. Epub 2017 Feb 3.

DTU-Food, Technical University of Denmark, Copenhagen, Denmark.

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http://dx.doi.org/10.1111/tmi.12836DOI Listing
April 2017

Commentary: Benefits and risks of antimicrobial use in food-producing animals.

Front Microbiol 2017 7;8:181. Epub 2017 Feb 7.

Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark Copenhagen, Denmark.

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http://dx.doi.org/10.3389/fmicb.2017.00181DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5293740PMC
February 2017

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

J Antimicrob Chemother 2016 09 30;71(9):2484-8. Epub 2016 Jun 30.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kgs Lyngby, Denmark

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http://dx.doi.org/10.1093/jac/dkw184DOI Listing
September 2016

Is the Evolution of subsp. Linked to Restriction-Modification Systems?

mSystems 2016 May-Jun;1(3). Epub 2016 Jun 21.

Division for Epidemiology and Microbial Genomics, National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.1128/mSystems.00009-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069764PMC
June 2016

Identification and Antimicrobial Resistance of Bacteria Isolated from Probiotic Products Used in Shrimp Culture.

PLoS One 2015 6;10(7):e0132338. Epub 2015 Jul 6.

Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132338PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492959PMC
May 2016

Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania.

Infect Control Hosp Epidemiol 2016 May 22;37(5):622-3. Epub 2016 Feb 22.

6Centre for Genomic Epidemiology,Technical University of Denmark,Copenhagen,Denmark.

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http://dx.doi.org/10.1017/ice.2016.28DOI Listing
May 2016

Sharing Data for Global Infectious Disease Surveillance and Outbreak Detection.

Trends Microbiol 2016 Apr 12;24(4):241-245. Epub 2016 Feb 12.

Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.tim.2016.01.009DOI Listing
April 2016

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104.

Appl Environ Microbiol 2016 Apr 4;82(8):2516-26. Epub 2016 Apr 4.

Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1128/AEM.03821-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959494PMC
April 2016

Comparative genomics of toxigenic and non-toxigenic Staphylococcus hyicus.

Vet Microbiol 2016 Mar 25;185:34-40. Epub 2016 Jan 25.

Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1016/j.vetmic.2016.01.018DOI Listing
March 2016

Solving the problem of comparing whole bacterial genomes across different sequencing platforms.

PLoS One 2014 11;9(8):e104984. Epub 2014 Aug 11.

Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0104984PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4128722PMC
February 2016

Reads2Type: a web application for rapid microbial taxonomy identification.

BMC Bioinformatics 2015 Nov 25;16:398. Epub 2015 Nov 25.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Kgs. Lyngby, DK-2800, Denmark.

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http://dx.doi.org/10.1186/s12859-015-0829-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659212PMC
November 2015

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data.

J Clin Microbiol 2015 Aug 13;53(8):2410-26. Epub 2015 May 13.

WHO Collaborating Centre for Reference and Research on Escherichia and Klebsiella, Department of Microbiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark

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http://dx.doi.org/10.1128/JCM.00008-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4508402PMC
August 2015

Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark.

Stand Genomic Sci 2015 8;10:35. Epub 2015 Jul 8.

Department of Plant and Environmental Science, University of Copenhagen, Frederiksberg, Denmark ; Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China.

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http://dx.doi.org/10.1186/s40793-015-0021-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511184PMC
July 2015

The livestock reservoir for antimicrobial resistance: a personal view on changing patterns of risks, effects of interventions and the way forward.

Philos Trans R Soc Lond B Biol Sci 2015 Jun;370(1670):20140085

National Food Institute, Technical University of Denmark, 2800 Lyngby, Denmark

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http://dx.doi.org/10.1098/rstb.2014.0085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4424434PMC
June 2015

Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in Danish pig herds.

Vet Microbiol 2015 Apr 27;176(3-4):282-91. Epub 2015 Jan 27.

Technical University of Denmark, National Food Institute, Søborg, Denmark.

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http://dx.doi.org/10.1016/j.vetmic.2015.01.004DOI Listing
April 2015

The EcoKI type I restriction-modification system in Escherichia coli affects but is not an absolute barrier for conjugation.

J Bacteriol 2015 Jan 10;197(2):337-42. Epub 2014 Nov 10.

Division for Epidemiology and Microbial Genomics, National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.1128/JB.02418-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272590PMC
January 2015

Audouin's gull, a potential vehicle of an extended spectrum β-lactamase producing Salmonella Agona.

FEMS Microbiol Lett 2015 Jan 4;362(3):1-4. Epub 2014 Dec 4.

WHO Collaborating Centre for Antimicrobial Resistance in Food borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, National Food Institute, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1093/femsle/fnu039DOI Listing
January 2015

The role of the st313-td gene in virulence of Salmonella Typhimurium ST313.

PLoS One 2014 3;9(1):e84566. Epub 2014 Jan 3.

WHO Collaborating Centre for Antimicrobial Resistance in Food-borne Pathogens and EU Reference Laboratory for Antimicrobial Resistance, National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0084566PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3880295PMC
September 2014

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

PLoS One 2014 4;9(2):e87991. Epub 2014 Feb 4.

Division for Epidemiology and Microbial Genomics, National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0087991PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3913712PMC
September 2014

Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.

J Clin Microbiol 2014 May 26;52(5):1501-10. Epub 2014 Feb 26.

National Food Institute, Division for Epidemiology and Microbial Genomics, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.1128/JCM.03617-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3993690PMC
May 2014

Benchmarking of methods for genomic taxonomy.

J Clin Microbiol 2014 May 26;52(5):1529-39. Epub 2014 Feb 26.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.1128/JCM.02981-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3993634PMC
May 2014

Antimicrobial resistance of zoonotic and commensal bacteria in Europe: the missing link between consumption and resistance in veterinary medicine.

Vet Microbiol 2014 May 3;170(1-2):1-9. Epub 2014 Feb 3.

National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1016/j.vetmic.2014.01.013DOI Listing
May 2014

.Analysis of the contribution of bacteriophage ST64B to in vitro virulence traits of Salmonella enterica serovar Typhimurium.

J Med Microbiol 2014 Mar 9;63(Pt 3):331-42. Epub 2013 Dec 9.

WHO Collaborating Centre for Antimicrobial Resistance in Food-borne Pathogens and EU Reference Laboratory for Antimicrobial Resistance, National Food Institute, Technical University of Denmark, Kgs Lyngby, Denmark.

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http://dx.doi.org/10.1099/jmm.0.068221-0DOI Listing
March 2014

Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo.

J Infect Dev Ctries 2013 Oct 15;7(10):696-706. Epub 2013 Oct 15.

Division of Bacterial Genomics and Epidemiology, WHO Collaborating Center for Antimicrobial Resistance in Food borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, National Food Institute and Center for Biological Sequence Analysis, Department of System Biology Technical University of Denmark, Kemitorvet, Building 204, DK-2800 Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.3855/jidc.3328DOI Listing
October 2013

Livestock origin for a human pandemic clone of community-associated methicillin-resistant Staphylococcus aureus.

MBio 2013 Aug 13;4(4). Epub 2013 Aug 13.

The Roslin Institute and Edinburgh Infectious Diseases, University of Edinburgh, Easter Bush, Midlothian, United Kingdom.

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http://dx.doi.org/10.1128/mBio.00356-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3747577PMC
August 2013

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data.

BMC Genomics 2012 13;13 Suppl 7:S6. Epub 2012 Dec 13.

National Food Institute, Technical University of Denmark, 2800 Kgs Lyngby, Denmark.

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http://dx.doi.org/10.1186/1471-2164-13-S7-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521233PMC
June 2013

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.

J Antimicrob Chemother 2013 Apr 11;68(4):771-7. Epub 2012 Dec 11.

National Food Institute, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1093/jac/dks496DOI Listing
April 2013

Voluntary ban on cephalosporin use in Danish pig production has effectively reduced extended-spectrum cephalosporinase-producing Escherichia coli in slaughter pigs.

J Antimicrob Chemother 2013 Mar 5;68(3):569-72. Epub 2012 Nov 5.

Research Group of Bacterial Genomics and Antimicrobial Resistance, National Food Institute, Technical University of Denmark, Kemitorvet build. 204, 2800 Lyngby, Denmark.

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http://dx.doi.org/10.1093/jac/dks427DOI Listing
March 2013

Extremely drug-resistant Salmonella enterica serovar Senftenberg infections in patients in Zambia.

J Clin Microbiol 2013 Jan 17;51(1):284-6. Epub 2012 Oct 17.

WHO Collaborating Centre for Antimicrobial Resistance in Food-Borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, National Food Institute, Technical University of Denmark, Lyngby, Denmark.

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http://dx.doi.org/10.1128/JCM.02227-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536257PMC
January 2013

Identification of acquired antimicrobial resistance genes.

J Antimicrob Chemother 2012 Nov 10;67(11):2640-4. Epub 2012 Jul 10.

National Food Institute, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1093/jac/dks261DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3468078PMC
November 2012

SCCmec Type IX Element in Methicillin Resistant Staphylococcusaureusspa Type t337 (CC9) Isolated from Pigs and Pork in Thailand.

Front Microbiol 2012 22;3:103. Epub 2012 Mar 22.

WHO Collaborating Center for Antimicrobial Resistance in Food Borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, National Food Institute, Technical University of Denmark Kgs. Lyngby, Denmark.

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http://journal.frontiersin.org/article/10.3389/fmicb.2012.00
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http://dx.doi.org/10.3389/fmicb.2012.00103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3310184PMC
October 2012

In vitro susceptibility testing of fluoroquinolone activity against Salmonella: recent changes to CLSI standards.

Clin Infect Dis 2012 Oct 2;55(8):1107-13. Epub 2012 Jul 2.

Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles California, USA.

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http://dx.doi.org/10.1093/cid/cis600DOI Listing
October 2012

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes.

BMC Genomics 2012 Oct 31;13:577. Epub 2012 Oct 31.

DTU Food, The Technical University of Denmark, Kgs Lyngby, Denmark.

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http://dx.doi.org/10.1186/1471-2164-13-577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3575317PMC
October 2012

Study of methicillin resistant Staphylococcus aureus (MRSA) in Danish pigs at slaughter and in imported retail meat reveals a novel MRSA type in slaughter pigs.

Vet Microbiol 2012 May 24;157(1-2):246-50. Epub 2011 Dec 24.

Research Group for Microbial Genomics and Antimicrobial Resistance, National Food Institute, Technical University of Denmark, Kemitorvet Build. 204, DK-2800 Lyngby, Denmark.

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https://linkinghub.elsevier.com/retrieve/pii/S03781135110066
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http://dx.doi.org/10.1016/j.vetmic.2011.12.023DOI Listing
May 2012

Antimicrobial-resistant Shigella infections from Iran: an overlooked problem?

J Antimicrob Chemother 2012 May 17;67(5):1128-33. Epub 2012 Feb 17.

Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University, Medical Sciences, Tehran, Iran.

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http://dx.doi.org/10.1093/jac/dks023DOI Listing
May 2012

Clonal diversity of Staphylococcus aureus originating from the small ruminants goats and sheep.

Vet Microbiol 2012 Apr 21;156(1-2):157-61. Epub 2011 Oct 21.

Centro de Vigilancia Sanitaria Veterinaria (VISAVET), Universidad Complutense de Madrid, Avenida Puerta de Hierro s/n, 28040 Madrid, Spain.

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http://linkinghub.elsevier.com/retrieve/pii/S037811351100558
Publisher Site
http://dx.doi.org/10.1016/j.vetmic.2011.10.015DOI Listing
April 2012

Multilocus sequence typing of total-genome-sequenced bacteria.

J Clin Microbiol 2012 Apr 11;50(4):1355-61. Epub 2012 Jan 11.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark.

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http://dx.doi.org/10.1128/JCM.06094-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3318499PMC
April 2012

Characterization of isolates of Salmonella enterica serovar Stanley, a serovar endemic to Asia and associated with travel.

J Clin Microbiol 2012 Mar 11;50(3):709-20. Epub 2012 Jan 11.

Departamentos de Microbiología-Parasitología, Universidad Nacional Autónoma de México, Mexico City, Mexico, and HospitalJuárez de México, Mexico City, Mexico.

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http://dx.doi.org/10.1128/JCM.05943-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3295172PMC
March 2012

Prevalence of extended-spectrum cephalosporinase (ESC)-producing Escherichia coli in Danish slaughter pigs and retail meat identified by selective enrichment and association with cephalosporin usage.

J Antimicrob Chemother 2012 Mar 29;67(3):582-8. Epub 2011 Dec 29.

Research Group for Microbial Genomics and Antimicrobial Resistance, National Food Institute, Technical University of Denmark, Lyngby, Denmark.

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http://dx.doi.org/10.1093/jac/dkr507DOI Listing
March 2012

Antimicrobial resistance in Salmonella spp. recovered from patients admitted to six different hospitals in Tehran, Iran from 2007 to 2008.

Folia Microbiol (Praha) 2012 Mar 4;57(2):91-7. Epub 2012 Feb 4.

Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Science, Tehran, Iran.

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http://dx.doi.org/10.1007/s12223-012-0099-4DOI Listing
March 2012

Genomic variation in Salmonella enterica core genes for epidemiological typing.

BMC Genomics 2012 Mar 12;13:88. Epub 2012 Mar 12.

National Food Institute, Building 204, The Technical University of Denmark,2800 Kgs Lyngby, Denmark

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3359268PMC
March 2012

Prevalence and characterization of cephalosporin resistance in nonpathogenic Escherichia coli from food-producing animals slaughtered in Poland.

Microb Drug Resist 2012 Feb 1;18(1):79-82. Epub 2011 Jul 1.

Department of Microbiology, National Veterinary Research Institute, Pulawy, Poland.

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http://dx.doi.org/10.1089/mdr.2011.0033DOI Listing
February 2012

Association between antimicrobial resistance in Escherichia coli isolates from food animals and blood stream isolates from humans in Europe: an ecological study.

Foodborne Pathog Dis 2011 Dec 1;8(12):1295-301. Epub 2011 Sep 1.

National Food Institute, Technical University of Denmark, Lyngby, Denmark.

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http://dx.doi.org/10.1089/fpd.2011.0950DOI Listing
December 2011

International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin.

J Infect Dis 2011 Sep 2;204(5):675-84. Epub 2011 Aug 2.

Institut Pasteur, Unité des Bactéries Pathogènes Entériques, Centre National de Référence des Salmonella, World Health Organization (WHO) Collaborating Centre for Reference and Research on Salmonella, Paris, France.

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http://dx.doi.org/10.1093/infdis/jir409DOI Listing
September 2011

[Increasing transmission of antibiotic resistance from animals to humans].

Ugeskr Laeger 2011 Sep;173(36):2180-3

Fødevareinstituttet, Danmarks Tekniske Universitet, Denmark.

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September 2011

Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007.

Foodborne Pathog Dis 2011 Aug 14;8(8):887-900. Epub 2011 Apr 14.

National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and Community Reference Laboratory for Antimicrobial Resistance, Technical University of Denmark, Copenhagen, Denmark.

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http://www.liebertpub.com/doi/10.1089/fpd.2010.0787
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http://dx.doi.org/10.1089/fpd.2010.0787DOI Listing
August 2011