Eli Kaminuma

Eli Kaminuma

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Eli Kaminuma

Eli Kaminuma

Publications by authors named "Eli Kaminuma"

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DNA Data Bank of Japan: 30th anniversary.

Nucleic Acids Res 2018 01;46(D1):D30-D35

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gkx926DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753283PMC
January 2018

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma ( Marc.) Using a Hybrid Assembly Approach.

Front Genet 2017 5;8:180. Epub 2017 Dec 5.

Genome Informatics Laboratory, Center for Information Biology, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.3389/fgene.2017.00180DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723288PMC
December 2017

Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits.

Sci Rep 2017 07 5;7(1):4721. Epub 2017 Jul 5.

Laboratory of Biometry and Bioinformatics, Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657, Japan.

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http://dx.doi.org/10.1038/s41598-017-05100-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498537PMC
July 2017

Genomic characterization reconfirms the taxonomic status of .

Biosci Microbiota Food Health 2017 4;36(3):129-134. Epub 2017 Mar 4.

Institute of Livestock and Grassland Science, National Agriculture and Food Research Organization, 768 Senbonmatsu, Nasushiobara, Tochigi 329-2793, Japan.

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http://dx.doi.org/10.12938/bmfh.16-026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5510158PMC
March 2017

DNA Data Bank of Japan.

Nucleic Acids Res 2017 01 24;45(D1):D25-D31. Epub 2016 Oct 24.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

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http://dx.doi.org/10.1093/nar/gkw1001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210514PMC
January 2017

DFAST and DAGA: web-based integrated genome annotation tools and resources.

Biosci Microbiota Food Health 2016 14;35(4):173-184. Epub 2016 Jul 14.

Center for Information Biology, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan; RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.12938/bmfh.16-003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5107635PMC
July 2016

tasiRNA-ARF pathway moderates floral architecture in Arabidopsis plants subjected to drought stress.

Biomed Res Int 2014 26;2014:303451. Epub 2014 Aug 26.

Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan ; Kihara Institute for Biological Research, Yokohama City University, 641-12 Maioka-cho, Totsuka-ku, Yokohama, Kanagawa 244-0813, Japan ; Core Research for Evolutional Science and Technology, Japan Science and Technology, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan.

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http://www.hindawi.com/journals/bmri/2014/303451/
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http://dx.doi.org/10.1155/2014/303451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160631PMC
May 2016

DNA data bank of Japan (DDBJ) progress report.

Nucleic Acids Res 2016 Jan 17;44(D1):D51-7. Epub 2015 Nov 17.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan

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http://dx.doi.org/10.1093/nar/gkv1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702806PMC
January 2016

OryzaGenome: Genome Diversity Database of Wild Oryza Species.

Plant Cell Physiol 2016 Jan 16;57(1):e1. Epub 2015 Nov 16.

Plant Genetics Laboratory, National Institute of Genetics, Mishima, Japan Department of Genetics, School of Life Science, Graduate University for Advanced Studies, Mishima, Japan

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http://dx.doi.org/10.1093/pcp/pcv171DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722174PMC
January 2016

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

Nucleic Acids Res 2015 Jan 3;43(Database issue):D18-22. Epub 2014 Dec 3.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

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http://dx.doi.org/10.1093/nar/gku1120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383935PMC
January 2015

Draft Genome Sequence of Lactobacillus oryzae Strain SG293T.

Genome Announc 2014 Aug 28;2(4). Epub 2014 Aug 28.

National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science, Nasushiobara, Japan

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http://dx.doi.org/10.1128/genomeA.00861-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148733PMC
August 2014

Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains.

Genome Announc 2014 Jul 10;2(4). Epub 2014 Jul 10.

National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science, Nasushiobara, Japan

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http://dx.doi.org/10.1128/genomeA.00667-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110764PMC
July 2014

DDBJ progress report: a new submission system for leading to a correct annotation.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D44-9. Epub 2013 Nov 4.

DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan.

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http://dx.doi.org/10.1093/nar/gkt1066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964987PMC
January 2014

Functional genomics of tomato in a post-genome-sequencing phase.

Breed Sci 2013 Mar 1;63(1):14-20. Epub 2013 Mar 1.

Graduate School of Life and Environmental Sciences, Osaka Prefecture University , 1-1 Gakuen, Naka, Sakai, Osaka 599-8531, Japan ; Kazusa DNA Research Institute , 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan.

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http://dx.doi.org/10.1270/jsbbs.63.14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621439PMC
March 2013

DDBJ new system and service refactoring.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D25-9. Epub 2012 Nov 24.

DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gks1152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531146PMC
January 2013

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci.

Nucleic Acids Res 2013 Jan 27;41(Database issue):D880-4. Epub 2012 Nov 27.

Genome Informatics Laboratory, National Institute of Genetics, 1111 Yata, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gks1216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531069PMC
January 2013

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Nucleic Acids Res 2012 Jan 22;40(Database issue):D38-42. Epub 2011 Nov 22.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

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http://dx.doi.org/10.1093/nar/gkr994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244990PMC
January 2012

Programmed induction of endoreduplication by DNA double-strand breaks in Arabidopsis.

Proc Natl Acad Sci U S A 2011 Jun 25;108(24):10004-9. Epub 2011 May 25.

Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1103584108
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http://dx.doi.org/10.1073/pnas.1103584108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3116379PMC
June 2011

Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies.

Adv Exp Med Biol 2010 ;680:125-35

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Shizuoka, Japan.

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http://dx.doi.org/10.1007/978-1-4419-5913-3_15DOI Listing
February 2011

DDBJ progress report.

Nucleic Acids Res 2011 Jan 9;39(Database issue):D22-7. Epub 2010 Nov 9.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

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http://dx.doi.org/10.1093/nar/gkq1041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013661PMC
January 2011

DDBJ launches a new archive database with analytical tools for next-generation sequence data.

Nucleic Acids Res 2010 Jan 22;38(Database issue):D33-8. Epub 2009 Oct 22.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

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http://dx.doi.org/10.1093/nar/gkp847DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808917PMC
January 2010

Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants.

Plant Cell Physiol 2009 Sep 24;50(9):1715-20. Epub 2009 Jul 24.

Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan.

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http://dx.doi.org/10.1093/pcp/pcp109DOI Listing
September 2009

Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.

Proc Natl Acad Sci U S A 2009 Feb 30;106(7):2453-8. Epub 2009 Jan 30.

Plant Genomic Network Research Team, RIKEN Plant Science Center, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1073/pnas.0808902106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650177PMC
February 2009

Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography.

Plant J 2008 Nov 4;56(3):470-82. Epub 2008 Jul 4.

Bioinformatics and Systems Engineering Division, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

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http://doi.wiley.com/10.1111/j.1365-313X.2008.03609.x
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http://dx.doi.org/10.1111/j.1365-313X.2008.03609.xDOI Listing
November 2008

Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis.

Biochem Biophys Res Commun 2008 Nov 19;376(3):553-7. Epub 2008 Sep 19.

Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama-shi, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2008.09.046DOI Listing
November 2008

Objective evaluation measures of genetic marker selection in large-scale SNP genotyping.

J Bioinform Comput Biol 2008 Oct;6(5):905-17

Bioinformatics and Systems Engineering Division, RIKEN Yokohama Institute, 1-7-22, Suehiro, Tsurumi, Yokohama 230-0045, Japan.

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http://dx.doi.org/10.1142/s021972000800376xDOI Listing
October 2008

Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array.

Plant Cell Physiol 2008 Aug 13;49(8):1135-49. Epub 2008 Jul 13.

Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045 Japan.

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https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/
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http://dx.doi.org/10.1093/pcp/pcn101DOI Listing
August 2008

In silico phenotypic screening method of mutants based on statistical modeling of genetically mixed samples.

J Bioinform Comput Biol 2005 Dec;3(6):1281-93

Functional Genomics Research Group, Genomic Sciences Center, RIKEN, 1-7-22, Suehiro, Tsurumi, Yokohama, 230-0045, Japan.

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http://dx.doi.org/10.1142/s0219720005001557DOI Listing
December 2005

Three-dimensional definition of leaf morphological traits of Arabidopsis in silico phenotypic analysis.

J Bioinform Comput Biol 2005 Apr;3(2):401-14

Bioinformatics Group, Genomic Sciences Center, RIKEN, 1-7-22, Suehiro, Tsurumi, Yokohama, 230-0045, Japan.

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http://dx.doi.org/10.1142/s0219720005001119DOI Listing
April 2005

Automatic quantification of morphological traits via three-dimensional measurement of Arabidopsis.

Plant J 2004 Apr;38(2):358-65

Genomic Knowledge Base Research Team, Bioinformatics Group, RIKEN Yokohama Institute, Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1111/j.1365-313X.2004.02042.xDOI Listing
April 2004