Publications by authors named "Dandi Qiao"

31Publications

Statistical considerations for the analysis of massively parallel reporter assays data.

Genet Epidemiol 2020 Jul 18. Epub 2020 Jul 18.

Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts.

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http://dx.doi.org/10.1002/gepi.22337DOI Listing
July 2020

Machine Learning and Prediction of All-Cause Mortality in COPD.

Chest 2020 Sep 27;158(3):952-964. Epub 2020 Apr 27.

Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA; Division of Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, Boston, MA. Electronic address:

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http://dx.doi.org/10.1016/j.chest.2020.02.079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7478228PMC
September 2020

FAM13A Represses AMPK Activity and Regulates Hepatic Glucose and Lipid Metabolism.

iScience 2020 Mar 22;23(3):100928. Epub 2020 Feb 22.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.isci.2020.100928DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7063182PMC
March 2020

Author Correction: New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.

Authors:
Nick Shrine Anna L Guyatt A Mesut Erzurumluoglu Victoria E Jackson Brian D Hobbs Carl A Melbourne Chiara Batini Katherine A Fawcett Kijoung Song Phuwanat Sakornsakolpat Xingnan Li Ruth Boxall Nicola F Reeve Ma'en Obeidat Jing Hua Zhao Matthias Wielscher Stefan Weiss Katherine A Kentistou James P Cook Benjamin B Sun Jian Zhou Jennie Hui Stefan Karrasch Medea Imboden Sarah E Harris Jonathan Marten Stefan Enroth Shona M Kerr Ida Surakka Veronique Vitart Terho Lehtimäki Richard J Allen Per S Bakke Terri H Beaty Eugene R Bleecker Yohan Bossé Corry-Anke Brandsma Zhengming Chen James D Crapo John Danesh Dawn L DeMeo Frank Dudbridge Ralf Ewert Christian Gieger Amund Gulsvik Anna L Hansell Ke Hao Joshua D Hoffman John E Hokanson Georg Homuth Peter K Joshi Philippe Joubert Claudia Langenberg Xuan Li Liming Li Kuang Lin Lars Lind Nicholas Locantore Jian'an Luan Anubha Mahajan Joseph C Maranville Alison Murray David C Nickle Richard Packer Margaret M Parker Megan L Paynton David J Porteous Dmitry Prokopenko Dandi Qiao Rajesh Rawal Heiko Runz Ian Sayers Don D Sin Blair H Smith María Soler Artigas David Sparrow Ruth Tal-Singer Paul R H J Timmers Maarten Van den Berge John C Whittaker Prescott G Woodruff Laura M Yerges-Armstrong Olga G Troyanskaya Olli T Raitakari Mika Kähönen Ozren Polašek Ulf Gyllensten Igor Rudan Ian J Deary Nicole M Probst-Hensch Holger Schulz Alan L James James F Wilson Beate Stubbe Eleftheria Zeggini Marjo-Riitta Jarvelin Nick Wareham Edwin K Silverman Caroline Hayward Andrew P Morris Adam S Butterworth Robert A Scott Robin G Walters Deborah A Meyers Michael H Cho David P Strachan Ian P Hall Martin D Tobin Louise V Wain

Nat Genet 2019 Jun;51(6):1067

Department of Health Sciences, University of Leicester, Leicester, UK.

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http://dx.doi.org/10.1038/s41588-019-0438-3DOI Listing
June 2019

New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.

Authors:
Nick Shrine Anna L Guyatt A Mesut Erzurumluoglu Victoria E Jackson Brian D Hobbs Carl A Melbourne Chiara Batini Katherine A Fawcett Kijoung Song Phuwanat Sakornsakolpat Xingnan Li Ruth Boxall Nicola F Reeve Ma'en Obeidat Jing Hua Zhao Matthias Wielscher Stefan Weiss Katherine A Kentistou James P Cook Benjamin B Sun Jian Zhou Jennie Hui Stefan Karrasch Medea Imboden Sarah E Harris Jonathan Marten Stefan Enroth Shona M Kerr Ida Surakka Veronique Vitart Terho Lehtimäki Richard J Allen Per S Bakke Terri H Beaty Eugene R Bleecker Yohan Bossé Corry-Anke Brandsma Zhengming Chen James D Crapo John Danesh Dawn L DeMeo Frank Dudbridge Ralf Ewert Christian Gieger Amund Gulsvik Anna L Hansell Ke Hao Joshua D Hoffman John E Hokanson Georg Homuth Peter K Joshi Philippe Joubert Claudia Langenberg Xuan Li Liming Li Kuang Lin Lars Lind Nicholas Locantore Jian'an Luan Anubha Mahajan Joseph C Maranville Alison Murray David C Nickle Richard Packer Margaret M Parker Megan L Paynton David J Porteous Dmitry Prokopenko Dandi Qiao Rajesh Rawal Heiko Runz Ian Sayers Don D Sin Blair H Smith María Soler Artigas David Sparrow Ruth Tal-Singer Paul R H J Timmers Maarten Van den Berge John C Whittaker Prescott G Woodruff Laura M Yerges-Armstrong Olga G Troyanskaya Olli T Raitakari Mika Kähönen Ozren Polašek Ulf Gyllensten Igor Rudan Ian J Deary Nicole M Probst-Hensch Holger Schulz Alan L James James F Wilson Beate Stubbe Eleftheria Zeggini Marjo-Riitta Jarvelin Nick Wareham Edwin K Silverman Caroline Hayward Andrew P Morris Adam S Butterworth Robert A Scott Robin G Walters Deborah A Meyers Michael H Cho David P Strachan Ian P Hall Martin D Tobin Louise V Wain

Nat Genet 2019 03 25;51(3):481-493. Epub 2019 Feb 25.

Department of Health Sciences, University of Leicester, Leicester, UK.

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http://dx.doi.org/10.1038/s41588-018-0321-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6397078PMC
March 2019

Genome-wide assessment of gene-by-smoking interactions in COPD.

Sci Rep 2018 06 18;8(1):9319. Epub 2018 Jun 18.

Department of public health sciences, Seoul national university, Seoul, Korea.

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http://dx.doi.org/10.1038/s41598-018-27463-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6006158PMC
June 2018

WISARD: workbench for integrated superfast association studies for related datasets.

BMC Med Genomics 2018 04 20;11(Suppl 2):39. Epub 2018 Apr 20.

Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, South Korea.

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http://dx.doi.org/10.1186/s12920-018-0345-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5918457PMC
April 2018

Selecting cases and controls for DNA sequencing studies using family histories of disease.

Stat Med 2017 06 21;36(13):2081-2099. Epub 2017 Feb 21.

Interdisciplinary Program of Bioinformatics, Seoul National University, Seoul, Korea.

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http://dx.doi.org/10.1002/sim.7248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5810411PMC
June 2017

Gene-based segregation method for identifying rare variants in family-based sequencing studies.

Genet Epidemiol 2017 05 13;41(4):309-319. Epub 2017 Feb 13.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1002/gepi.22037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397337PMC
May 2017

Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.

Nat Genet 2017 Mar 6;49(3):426-432. Epub 2017 Feb 6.

Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/ng.3752DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381275PMC
March 2017

Increasing Generality and Power of Rare-Variant Tests by Utilizing Extended Pedigrees.

Am J Hum Genet 2016 Oct 22;99(4):846-859. Epub 2016 Sep 22.

Division of Genetics, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.08.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065687PMC
October 2016

Boosting Gene Mapping Power and Efficiency with Efficient Exact Variance Component Tests of Single Nucleotide Polymorphism Sets.

Genetics 2016 11 19;204(3):921-931. Epub 2016 Sep 19.

Department of Biostatistics, University of California, Los Angeles, California 90095.

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http://dx.doi.org/10.1534/genetics.116.190454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5105869PMC
November 2016

FARVATX: Family-Based Rare Variant Association Test for X-Linked Genes.

Genet Epidemiol 2016 09 21;40(6):475-85. Epub 2016 Jun 21.

Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea.

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http://dx.doi.org/10.1002/gepi.21979DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981534PMC
September 2016

Family-Based Rare Variant Association Analysis: A Fast and Efficient Method of Multivariate Phenotype Association Analysis.

Genet Epidemiol 2016 09 17;40(6):502-11. Epub 2016 Jun 17.

Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea.

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http://dx.doi.org/10.1002/gepi.21985DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981535PMC
September 2016

PLD3 gene variants and Alzheimer's disease.

Nature 2015 Apr;520(7545):E7-8

MassGeneral Institute for Neurodegenerative Diseases, Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.

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http://dx.doi.org/10.1038/nature14040DOI Listing
April 2015

A comparative analysis of family-based and population-based association tests using whole genome sequence data.

BMC Proc 2014 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S33. Epub 2014 Jun 17.

Biostatistics Department, Harvard School of Public Health, Boston, MA 02115 USA.

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http://dx.doi.org/10.1186/1753-6561-8-S1-S33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143682PMC
December 2014

PRIMUS: rapid reconstruction of pedigrees from genome-wide estimates of identity by descent.

Am J Hum Genet 2014 Nov 30;95(5):553-64. Epub 2014 Oct 30.

Epidemiology, Human Genetics, & Environmental Sciences, University of Texas Health Science Center, Houston, TX 77225, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.10.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4225580PMC
November 2014

The rare TREM2 R47H variant exerts only a modest effect on Alzheimer disease risk.

Neurology 2014 Oct 3;83(15):1353-8. Epub 2014 Sep 3.

From the MassGeneral Institute for Neurodegenerative Diseases (B.V.H., A.R.P., K.M., R.E.T.), Department of Neurology, Massachusetts General Hospital, Boston; Department of Biostatistics (W.-K.Y., D.Q., C.L.), Harvard School of Public Health, Boston, MA; Department of Vertebrate Genomics (T.L., J.T.R., L.B.), Max Planck Institute for Molecular Genetics, Berlin; Department of Psychiatry and Psychotherapy (F.J., A.R.), Institute for Medical Biometry, Informatics and Epidemiology (T.B.), and Institute of Human Genetics (A.R.), University of Bonn; German Center for Neurodegenerative Diseases (DZNE) (F.J., T.B.), Bonn; and Department of Psychiatry (O.P.), Charité University Medicine, Berlin, Germany.

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http://www.neurology.org/content/83/15/1353.full.pdf
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http://www.neurology.org/cgi/doi/10.1212/WNL.000000000000085
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http://dx.doi.org/10.1212/WNL.0000000000000855DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189101PMC
October 2014

On the simultaneous association analysis of large genomic regions: a massive multi-locus association test.

Bioinformatics 2014 Jan 20;30(2):157-64. Epub 2013 Nov 20.

Department of Biostatistics, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA 20115, USA, Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, Department of Genomic Mathematics, University of Bonn, 53113 Bonn, Germany and Department of Thoracic Medicine, Haukeland University Hospital and Section for Respiratory Medicine Institute of Medicine, University of Bergen, 5006 Bergen, Norway.

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http://dx.doi.org/10.1093/bioinformatics/btt654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3892690PMC
January 2014

On association analysis of rare variants under population substructure: an approach for the detection of subjects that can cause bias in the analysis--T opt: an outlier detection method.

Genet Epidemiol 2013 Jul 14;37(5):431-9. Epub 2013 May 14.

Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1002/gepi.21734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3918437PMC
July 2013

Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data.

BMC Bioinformatics 2012 May 16;13:100. Epub 2012 May 16.

Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1186/1471-2105-13-100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3434015PMC
May 2012