Bernard J Pope

Bernard J Pope

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Bernard J Pope

Bernard J Pope

Publications by authors named "Bernard J Pope"

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Hi-Plex2: a simple and robust approach to targeted sequencing-based genetic screening.

Biotechniques 2019 Sep 3;67(3):118-122. Epub 2019 Jul 3.

Genetic Epidemiology Laboratory, Department of Clinical Pathology, The University of Melbourne, Melbourne, VIC, Australia.

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http://dx.doi.org/10.2144/btn-2019-0026DOI Listing
September 2019

Tumor mutational signatures in sebaceous skin lesions from individuals with Lynch syndrome.

Mol Genet Genomic Med 2019 Jul 4;7(7):e00781. Epub 2019 Jun 4.

Colorectal Oncogenomics Group, Department of Clinical Pathology, The University of Melbourne, Parkville, Vic., Australia.

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http://dx.doi.org/10.1002/mgg3.781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6625139PMC
July 2019

Annotation of the Giardia proteome through structure-based homology and machine learning.

Gigascience 2019 01 1;8(1). Epub 2019 Jan 1.

Population Health and Immunity Division, Walter & Eliza Hall Institute of Medical Research, 1G Royal Pde, Parkville, VIC 3052, Australia.

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https://academic.oup.com/gigascience/advance-article/doi/10.
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http://dx.doi.org/10.1093/gigascience/giy150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6312909PMC
January 2019

Correction: Risk of colorectal cancer for carriers of a germ-line mutation in POLE or POLD1.

Genet Med 2018 10;20(10):1299

Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Parkville, Victoria, Australia.

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http://dx.doi.org/10.1038/gim.2017.265DOI Listing
October 2018

sEst: Accurate Sex-Estimation and Abnormality Detection in Methylation Microarray Data.

Int J Mol Sci 2018 Oct 15;19(10). Epub 2018 Oct 15.

Melbourne Bioinformatics, The University of Melbourne, Parkville, VIC 3010, Australia.

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http://www.mdpi.com/1422-0067/19/10/3172
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http://dx.doi.org/10.3390/ijms19103172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213967PMC
October 2018

Risk of colorectal cancer for carriers of a germ-line mutation in POLE or POLD1.

Genet Med 2018 08 9;20(8):890-895. Epub 2017 Nov 9.

Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Parkville, Victoria, Australia.

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http://www.nature.com/articles/gim2017185
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http://dx.doi.org/10.1038/gim.2017.185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943186PMC
August 2018

Hi-Plex for Simple, Accurate, and Cost-Effective Amplicon-based Targeted DNA Sequencing.

Methods Mol Biol 2018 ;1712:53-70

Melbourne Bioinformatics, The University of Melbourne, Parkville, VIC, 3010, Australia.

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http://dx.doi.org/10.1007/978-1-4939-7514-3_5DOI Listing
July 2018

A novel injury model reveals severed axons are cleared through a Draper/MMP-1 signaling cascade.

Elife 2017 08 21;6. Epub 2017 Aug 21.

Jungers Center for Neurosciences Research, Department of Neurology, Oregon Health and Science University, Portland, United States.

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http://dx.doi.org/10.7554/eLife.23611DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5565368PMC
August 2017

Mutation screening of ACKR3 and COPS8 in kidney cancer cases from the CONFIRM study.

Fam Cancer 2017 07;16(3):411-416

Department of Medicine, The Universityof Melbourne, Melbourne, Australia.

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http://dx.doi.org/10.1007/s10689-016-9961-xDOI Listing
July 2017

Single nucleotide-level mapping of DNA double-strand breaks in human HEK293T cells.

Genom Data 2017 Mar 11;11:43-45. Epub 2016 Nov 11.

Victorian Life Sciences Computation Initiative, The University of Melbourne, Australia; Genomic Technologies Group, Genetic Epidemiology Laboratory, Department of Pathology, The University of Melbourne, Australia.

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http://dx.doi.org/10.1016/j.gdata.2016.11.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5133665PMC
March 2017

Fine resolution mapping of double-strand break sites for human ribosomal DNA units.

Genom Data 2016 Dec 24;10:19-21. Epub 2016 Aug 24.

Victorian Life Sciences Computation Initiative, The University of Melbourne, Australia; Genomic Technologies Group, Genetic Epidemiology Laboratory, Department of Pathology, The University of Melbourne, Australia.

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http://dx.doi.org/10.1016/j.gdata.2016.08.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021761PMC
December 2016

Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat.

Gigascience 2015 26;4:55. Epub 2015 Nov 26.

Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, VIC 3084 Australia ; Department of Pathology, The University of Melbourne, Parkville, VIC 3052 Australia ; Division of Cancer Medicine, La Trobe University, Bundoora, VIC 3086 Australia ; School of Cancer Medicine, La Trobe University, Bundoora, VIC 3084 Australia.

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http://dx.doi.org/10.1186/s13742-015-0098-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4660811PMC
July 2016

UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.

BMC Bioinformatics 2016 Apr 16;17:165. Epub 2016 Apr 16.

Department of Computing and Information Systems, The University of Melbourne, Melbourne, Victoria, 3010, Australia.

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http://dx.doi.org/10.1186/s12859-016-1014-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833922PMC
April 2016

Mutation screening of PALB2 in clinically ascertained families from the Breast Cancer Family Registry.

Breast Cancer Res Treat 2015 Jan 10;149(2):547-54. Epub 2015 Jan 10.

Genetic Epidemiology Laboratory, Department of Pathology, The University of Melbourne, Melbourne, VIC, 3010, Australia,

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http://dx.doi.org/10.1007/s10549-014-3260-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542063PMC
January 2015

Abridged adapter primers increase the target scope of Hi-Plex.

Biotechniques 2015 Jan 1;58(1):33-6. Epub 2015 Jan 1.

Genetic Epidemiology Laboratory, Department of Pathology, The University of Melbourne, Melbourne, Australia.

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http://dx.doi.org/10.2144/000114247DOI Listing
January 2015

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.

Genome Med 2014 20;6(11):90. Epub 2014 Nov 20.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010 Australia.

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http://dx.doi.org/10.1186/s13073-014-0090-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4237778PMC
November 2014

ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets.

Source Code Biol Med 2014 Jan 24;9(1). Epub 2014 Jan 24.

Genetic Epidemiology Laboratory, Department of Pathology, Medical Building, The University of Melbourne, Melbourne, Victoria 3010, Australia.

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http://dx.doi.org/10.1186/1751-0473-9-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904415PMC
January 2014

Cross-platform compatibility of Hi-Plex, a streamlined approach for targeted massively parallel sequencing.

Anal Biochem 2013 Nov 8;442(2):127-9. Epub 2013 Aug 8.

Genetic Epidemiology Laboratory, Department of Pathology, The University of Melbourne, Melbourne, Victoria 3010, Australia.

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http://dx.doi.org/10.1016/j.ab.2013.07.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3839948PMC
November 2013

A high-plex PCR approach for massively parallel sequencing.

Biotechniques 2013 Aug;55(2):69-74

Genetic Epidemiology Laboratory, Department of Pathology, The University of Melbourne, Victoria, Australia.

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http://dx.doi.org/10.2144/000114052DOI Listing
August 2013

Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models.

Conf Proc IEEE Eng Med Biol Soc 2011 ;2011:433-6

Victorian Life Science Computation Initiative, 187 Grattan Street, Carlton, VIC 3010, Australia.

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http://dx.doi.org/10.1109/IEMBS.2011.6090058DOI Listing
June 2012

Performance of hybrid programming models for multiscale cardiac simulations: preparing for petascale computation.

IEEE Trans Biomed Eng 2011 Oct 14;58(10):2965-9. Epub 2011 Jul 14.

Victorian Life Science Computation Initiative, Carlton, VIC 3010, Australia.

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http://dx.doi.org/10.1109/TBME.2011.2161580DOI Listing
October 2011