39,567 results match your criteria family phylogeny

Evolution of protective symbiosis in palaemonid shrimps (Decapoda: Caridea) with emphases on host spectrum and morphological adaptations.

Mol Phylogenet Evol 2021 May 10:107201. Epub 2021 May 10.

Simon F. S. Li Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China; Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PW, UK. Electronic address:

Palaemonidae is the most speciose caridean shrimp family, with its huge biodiversity partially generated via symbiosis with various marine invertebrates. Previous studies have provided insights into the evolution of protective symbiosis in this family with evidence for frequent inter-phyla host switches, but the comprehensiveness of evolutionary pathways is hampered by the resolution of the previous phylogenetic trees as well as the taxon coverage. Furthermore, several critical issues related to the evolution of a symbiotic lifestyle, including the change in host spectrum and corresponding morphological adaptations, remain largely unresolved. Read More

View Article and Full-Text PDF

[Bioinformatics analysis and expression pattern of NAC transcription factor family of Angelica dahurica var. formosana from Sichuan province].

Zhongguo Zhong Yao Za Zhi 2021 Apr;46(7):1769-1782

College of Agronomy, Sichuan Agricultural University Wenjiang 611130, China.

NAC(NAM/ATAF/CUC) protein plays an important role in plant growth and development, secondary cell wall formation and stress response. In this study, based on the sequencing data of Angelica dahurica, the NAC family was systematically analyzed using bioinformatics methods and its expression pattern was analyzed. Studies showed that 75 candidate genes had been selected from the NAC transcription factor family of A. Read More

View Article and Full-Text PDF

(Crustacea: Cladocera) as an ancient species group: a revision.

PeerJ 2021 23;9:e11310. Epub 2021 Apr 23.

Laboratory of Aquatic Ecology and Invasions, A.N. Severtsov Institute of Ecology and Evolution of Russian Academy of Sciences, Moscow, Russia.

Water fleas (Crustacea: Cladocera) of the Family Bosminidae have been studied since the founding of paleolimnology and freshwater ecology. However, one species, , stands out for its exceptional multicontinental range and broad ecological requirements. Here we use an integrated morphological and multilocus genetic approach to address the species problem in . Read More

View Article and Full-Text PDF

Setaria tundra, what do we know, what is still to be discovered?

Ann Parasitol 2021 ;667(1):1-10

Department of Parasitology, Faculty of Biology, Warsaw University, ul. Miecznikowa 1, 02-096 Warsaw, Poland.

Over the past years, the nematode species from the Onchocercidae family, Setaria tundra, has expanded its range by thousands of kilometres from subpolar to subtropical climate zone. Its presence has been confirmed in seven new countries. The appearance of this parasite in many other European countries, especially central and southern ones, is highly probable. Read More

View Article and Full-Text PDF

Possible Human-to-Dog Transmission of SARS-CoV-2, Italy, 2020.

Emerg Infect Dis 2021 May 12;27(7). Epub 2021 May 12.

We detected severe acute respiratory syndrome coronavirus 2 in an otherwise healthy poodle living with 4 family members who had coronavirus disease. We observed antibodies in serum samples taken from the dog, indicating seroconversion. Full-length genome sequencing showed that the canine and human viruses were identical, suggesting human-to-animal transmission. Read More

View Article and Full-Text PDF

Alternation between taxonomically divergent hosts is not the major determinant of flavivirus evolution.

Virus Evol 2021 Jan 21;7(1):veab040. Epub 2021 Apr 21.

Scientific Institute IRCCS E. MEDEA, Bioinformatics, Bosisio Parini 23842, Italy.

Flaviviruses display diverse epidemiological and ecological features. Tick-borne and mosquito-borne flaviviruses (TBFV and MBFV, respectively) are important human pathogens that alternate replication in invertebrate vectors and vertebrate hosts. The genus also includes insect-specific viruses (ISFVs) and viruses with unknown invertebrate hosts. Read More

View Article and Full-Text PDF
January 2021

Detection and molecular characteristics of Rhytidodoides sp. (Digenea: Rhytidodidae) from the gall bladder of green sea turtles (Chelonia mydas) in the Ogasawara Islands, Japan.

Parasitol Int 2021 May 7;83:102377. Epub 2021 May 7.

Laboratory of Parasitology, Faculty of Veterinary medicine, Okayama University of Science, 1-3 Ikoinooka, Imabari 794-8555, Japan.

Trematodes of the genus Rhytidodoides are parasitic in marine turtles. Of the already known species, Rhytidodoides similis Price, 1939, occurs especially in the gall bladder. In this study, we surveyed 73 green sea turtles (Chelonia mydas) in the Ogasawara Islands, Japan, and detected Rhytidodoides sp. Read More

View Article and Full-Text PDF

First Report of Causing Anthracnose of Guava () in Mexico.

Plant Dis 2021 May 10. Epub 2021 May 10.

Centro de Investigación en Alimentación y Desarrollo, Coordinación Culiacán, Carretera El Dorado Km 5.5, Campo el Diez, Culiacán, Sinaloa, Mexico, 80110;

Guava ( L.) is a small tree belonging to the Myrtaceae family and it is distributed worldwide in the tropical and subtropical areas. During the summer of 2019, symptoms of fruit anthracnose were observed on approx. Read More

View Article and Full-Text PDF

Comparative and phylogenetic analysis of the complete chloroplast genome sequences of and .

Mitochondrial DNA B Resour 2021 Apr 22;6(4):1498-1506. Epub 2021 Apr 22.

Key Laboratory of Bioactive Substances and Resource Utilization of Chinese Herbal Medicine from Ministry of Education, Engineering Research Center of Chinese Medicine Resources from Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, P. R. China.

is a biennial plant of genus belonging to the Asteraceae family. The classification of is controversial, and no consistent conclusions have been reached based on the analysis of morphological characters and different molecular markers. Here, we sequenced and assembled the complete chloroplast genome of . Read More

View Article and Full-Text PDF

New Glomeromycotan Taxa, sp. nov. and gen. nov. et sp. nov. From Brazil, and gen. nov. From New Caledonia.

Front Microbiol 2021 23;12:655910. Epub 2021 Apr 23.

Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Brazil.

Examination of fungal specimens collected in the Atlantic rain forest ecosystems of Northeast Brazil revealed many potentially new epigeous and semihypogeous glomerocarp-producing species of the phylum Glomeromycota. Among them were two fungi that formed unorganized epigeous glomerocarps with glomoid spores of almost identical morphology. The sole structure that distinguished the two fungi was the laminate layer 2 of their three-layered spore wall, which in spores of the second fungus crushed in PVLG-based mountants contracted and, consequently, transferred into a crown-like structure. Read More

View Article and Full-Text PDF

Genome-wide identification, characterization and expression analysis of the LIM transcription factor family in quinoa.

Physiol Mol Biol Plants 2021 Apr 13;27(4):787-800. Epub 2021 Apr 13.

College of Agronomy, Gansu Agricultural University, Lanzhou, 730070 China.

Lim family members play an important role in the regulation of plant cell development and stress response. However, there are few studies on LIM family in quinoa. In this study, we identified nine LIMS (named cqlim01-cqlim09) from quinoa, which were divided into three subfamilies (α Lim1, γ lim2 and δ lim2) according to phylogeny. Read More

View Article and Full-Text PDF

Functional pangenome analysis reveals high virulence plasticity of Aliarcobacter butzleri and affinity to human mucus.

Genomics 2021 May 4;113(4):2065-2076. Epub 2021 May 4.

Department of Agricultural, Forest and Food Sciences (DISAFA), University of Turin, Italy. Electronic address:

Aliarcobacter butzleri is an emerging pathogen that may cause enteritis in humans, however, the incidence of disease caused by this member of the Campylobacteriaceae family is still underestimated. Furthermore, little is known about the precise virulence mechanism and behavior during infection. Therefore, in the present study, through complementary use of comparative genomics and physiological tests on human gut models, we sought to elucidate the genetic background of a set of 32 A. Read More

View Article and Full-Text PDF

A revision of the species group in the millipede genus Chamberlin, 1918 (Diplopoda, Polydesmida, Xystodesmidae).

Zookeys 2021 13;1030:1-180. Epub 2021 Apr 13.

Virginia Tech, Department of Entomology, Blacksburg, Virginia 24061, USA Virginia Tech Blacksburg United States of America.

Millipedes in the family Xystodesmidae (Polydesmida) are often referred to as "colorful, flat-backed millipedes" for their bright aposematic coloration and tendency to form Müllerian mimicry rings in the Appalachian region. However, there are many species of Xystodesmidae that do not display colorful warning patterns, and instead have more cryptic appearances. Perhaps for this reason, groups such as the genus have remained understudied, despite containing a large number of undescribed species. Read More

View Article and Full-Text PDF

Reenacting the Birth of a Function: Functional Divergence of HIUases and Transthyretins as Inferred by Evolutionary and Biophysical Studies.

J Mol Evol 2021 May 6. Epub 2021 May 6.

Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

Transthyretin was discovered in the 1940s, named after its ability to bind thyroid hormones and retinol. In the genomic era, transthyretins were found to be part of a larger family with homologs of no obvious function, then called transthyretin-related proteins. Thus, it was proposed that the transthyretin gene could be the result of gene duplication of an ancestral of this newly identified homolog, later found out to be an enzyme involved in uric acid degradation, then named HIUase (5-hydroxy-isourate hydrolase). Read More

View Article and Full-Text PDF

Molecular Epidemiology and Phylogeny of Crimean-Congo Haemorrhagic Fever (CCHF) Virus of Ixodid Ticks in Khorasan Razavi Province of Iran.

J Arthropod Borne Dis 2020 Dec 31;14(4):400-407. Epub 2020 Dec 31.

Department of Foot and Mouth Disease Vaccine Production, Razi Vaccine and Serum Research Institute, Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran.

Background: Crimean-Congo hemorrhagic fever (CCHF) is a fatal disease caused by Nairovirus classified within the Bunyaviridae family. The virus is transmitted to humans through the bites of infected ticks or direct contact with viremic animals or humans. The current study aimed to detect the virus genome in ticks from Khorasan Razavi Province. Read More

View Article and Full-Text PDF
December 2020

Identification and Analysis of Family in .

Evol Bioinform Online 2021 12;17:1176934321994127. Epub 2021 Apr 12.

Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, People's Republic of China.

The phytohormone auxin are important in all aspects of plant growth and development. The () gene responds to auxin induction as auxin early response gene family. Despite the physiological importance of the gene, a systematic analysis of the gene in has not been reported. Read More

View Article and Full-Text PDF

Molecular-genetic characterization of human parvovirus B19 prevalent in Kerala State, India.

Virol J 2021 May 5;18(1):96. Epub 2021 May 5.

Laboratory Medicine and Molecular Diagnostics Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram, 695585, India.

Background: Human parvovirus B19V is a DNA virus, and a member of the family Parvoviridae, that causes various clinical manifestations, from asymptomatic to persistent infection that is associated with different autoimmune diseases. The parvovirus B19 evolves with a very high mutation rate that is closer to those of existing RNA viruses. Globally circulating B19V is currently classified into three genotypes, but their distribution is not spatially and temporally correlated. Read More

View Article and Full-Text PDF

Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers.

Elife 2021 May 5;10. Epub 2021 May 5.

Department of Biological Sciences, University of Manitoba, Winnipeg, Canada.

The speciose mammalian order Eulipotyphla (moles, shrews, hedgehogs, solenodons) combines an unusual diversity of semi-aquatic, semi-fossorial, and fossorial forms that arose from terrestrial forbearers. However, our understanding of the ecomorphological pathways leading to these lifestyles has been confounded by a fragmentary fossil record, unresolved phylogenetic relationships, and potential morphological convergence, calling for novel approaches. The net surface charge of the oxygen-storing muscle protein myoglobin (), which can be readily determined from its primary structure, provides an objective target to address this question due to mechanistic linkages with myoglobin concentration. Read More

View Article and Full-Text PDF

The complete mitogenome of from the Siberian tiger ().

Mitochondrial DNA B Resour 2021 Apr 15;6(4):1416-1418. Epub 2021 Apr 15.

Department of Parasitology, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, China.

is a polyxenical parasite and commonly found in canids and felids. In this study, we used the Illumina high throughput sequencing and assembly to determine the complete mitogenome of a representative of this parasite from the Siberian tiger (). The genome was 14,248 bp in size and encoded 12 protein-coding genes, 22 transfer RNAs, and two ribosomal RNAs. Read More

View Article and Full-Text PDF

Sequencing and analysis of the mitochondrial genome of (Bloch, 1793) (Perciformes: Sciaenidae).

Mitochondrial DNA B Resour 2021 Apr 15;6(4):1389-1391. Epub 2021 Apr 15.

Department of Biotechnology, Sangmyung University, Seoul, Korea.

Donkey croaker, (Bloch, 1793) is a commercially important croaker in the Indo-Pacific region. In this study, we sequenced and analyzed the mitogenome of . The nearly complete mitochondrial genome of is 15,694 bp in size. Read More

View Article and Full-Text PDF

Introducing a new pleosporalean family Sublophiostomataceae fam. nov. to accommodate Sublophiostoma gen. nov.

Sci Rep 2021 May 4;11(1):9496. Epub 2021 May 4.

Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, 50200, Thailand.

Collections of microfungi on bamboo and grasses in Thailand revealed an interesting species morphologically resembling Lophiostoma, but which can be distinguished from the latter based on multi-locus phylogeny. In this paper, a new genus, Sublophiostoma is introduced to accommodate the taxon, S. thailandica sp. Read More

View Article and Full-Text PDF

A Phylogeny-Informed Analysis of the Global Coral-Symbiodiniaceae Interaction Network Reveals that Traits Correlated with Thermal Bleaching Are Specific to Symbiont Transmission Mode.

mSystems 2021 May 4;6(3). Epub 2021 May 4.

Integrative Research Center, Field Museum of Natural History, Chicago, Illinois, USA

The complex network of associations between corals and their dinoflagellates (family Symbiodiniaceae) are the basis of coral reef ecosystems but are sensitive to increasing global temperatures. Coral-symbiont interactions are restricted by ecological and evolutionary determinants that constrain partner choice and influence holobiont response to environmental stress; however, little is known about how these processes shape thermal resilience of the holobiont. Here, we built a network of global coral-Symbiodiniaceae associations, mapped species traits (e. Read More

View Article and Full-Text PDF

Evolutionary pattern of karyotypes and meiosis in pholcid spiders (Araneae: Pholcidae): implications for reconstructing chromosome evolution of araneomorph spiders.

BMC Ecol Evol 2021 May 3;21(1):75. Epub 2021 May 3.

Arachnida Section, Alexander Koenig Zoological Research Museum, Adenauerallee 160, 53113, Bonn, Germany.

Background: Despite progress in genomic analysis of spiders, their chromosome evolution is not satisfactorily understood. Most information on spider chromosomes concerns the most diversified clade, entelegyne araneomorphs. Other clades are far less studied. Read More

View Article and Full-Text PDF

Analysis of recently duplicated TYRP1 genes and their effect on the formation of black patches in Oujiang-color common carp (Cyprinus carpio var. color).

Anim Genet 2021 May 3. Epub 2021 May 3.

Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai, 201306, China.

Tyrp1 gene, as a member of the tyrosinase family, has undergone a recent duplication event during fourth-round whole genome duplication in common carp. In this research, three Tyrp1 genes were identified in Oujiang-color common carp (Cyprinus carpio var. color). Read More

View Article and Full-Text PDF

Evolving origin-of-transfer sequences on staphylococcal conjugative and mobilizable plasmids-who's mimicking whom?

Nucleic Acids Res 2021 May 3. Epub 2021 May 3.

Curtin Health Innovation Research Institute, Curtin University, Perth, WA 6102, Australia.

In Staphylococcus aureus, most multiresistance plasmids lack conjugation or mobilization genes for horizontal transfer. However, most are mobilizable due to carriage of origin-of-transfer (oriT) sequences mimicking those of conjugative plasmids related to pWBG749. pWBG749-family plasmids have diverged to carry five distinct oriT subtypes and non-conjugative plasmids have been identified that contain mimics of each. Read More

View Article and Full-Text PDF

Extreme Morphology, Functional Trade-offs, and Evolutionary Dynamics in a Clade of Open-Ocean Fishes (Perciformes: Bramidae).

Integr Org Biol 2021 16;3(1):obab003. Epub 2021 Feb 16.

Biology Department, Morrill Science Center, University of Massachusetts, 611 North Pleasant Street, Amherst, MA 01003, USA.

When novel or extreme morphologies arise, they are oft met with the burden of functional trade-offs in other aspects of anatomy, which may limit phenotypic diversification and make particular adaptive peaks inaccessible. Bramids (Perciformes: Bramidae) comprise a small family of 20 extant species of fishes, which are distributed throughout pelagic waters worldwide. Within the Bramidae, the fanfishes ( and ) differ morphologically from the generally stout, laterally compressed species that typify the family. Read More

View Article and Full-Text PDF
February 2021

Genome wide identification, phylogeny, and synteny analysis of family in common carp ().

Biotechnol Rep (Amst) 2021 Jun 16;30:e00607. Epub 2021 Mar 16.

Division of Fish Genetics and Biotechnology, Fauclty of Fisheries Rangil, Ganderbal, SKUAST-Kashmir, India.

Common carp () is a commercial fish species valuable for nutritious components and plays a vital role in human healthy nutrition. The SOX (SRY-related genes systematically characterized by a high-mobility group HMG-box) encoded important gene regulatory proteins, a family of transcription factors found in a broad range of animal taxa and extensively known for its contribution in multiple developmental processes including contribution in sex determination across phyla. In our current study, we initially accomplished a genome-wide analysis to report the SOX gene family in common carp fish based on available genomic sequences of zebrafish retrieved from gene repository databases, we focused on the global identification of the Sox gene family in Common carp among wide range of vertebrates and teleosts based on bioinformatics tools and techniques and explore the evolutionary relationships. Read More

View Article and Full-Text PDF

Comparative Genomics Supports That Brazilian Bioethanol Comprise a Unified Group of Domesticated Strains Related to Cachaça Spirit Yeasts.

Front Microbiol 2021 15;12:644089. Epub 2021 Apr 15.

Laboratory for Genomics and Experimental Evolution of Yeasts, Institute for Bioenergy Research, São Paulo State University, Rio Claro, Brazil.

Ethanol production from sugarcane is a key renewable fuel industry in Brazil. Major drivers of this alcoholic fermentation are strains that originally were contaminants to the system and yet prevail in the industrial process. Here we present newly sequenced genomes (using Illumina short-read and PacBio long-read data) of two monosporic isolates (H3 and H4) of the PE-2, a predominant bioethanol strain in Brazil. Read More

View Article and Full-Text PDF

Genome-wide analysis of ATP-binding cassette transporter provides insight to genes related to bioactive metabolite transportation in Salvia miltiorrhiza.

BMC Genomics 2021 May 1;22(1):315. Epub 2021 May 1.

Engineering Research Center of Chinese Medicine Resource, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.

Background: ATP-binding cassette (ABC) transporters have been found to play important roles in metabolic transport in plant cells, influencing subcellular compartmentalisation and tissue distribution of these metabolic compounds. Salvia miltiorrhiza Bunge, known as Danshen in traditional Chinese medicine, is a highly valued medicinal plant used to treat cardiovascular and cerebrovascular diseases. The dry roots and rhizomes of S. Read More

View Article and Full-Text PDF

Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress.

BMC Genomics 2021 May 1;22(1):317. Epub 2021 May 1.

Institute of Crop Science, Zhejiang University, Hangzhou, 310058, China.

Background: HAK/KUP/KT (High-affinity K transporters/K uptake permeases/K transporters) is the largest potassium transporter family in plants, and plays pivotal roles in K uptake and transport, as well as biotic and abiotic stress responses. However, our understanding of the gene family in barley (Hordeum vulgare L.) is quite limited. Read More

View Article and Full-Text PDF