797 results match your criteria Standards in genomic sciences[Journal]


Complete genome of Rhizobium Norway, an ineffective micro-symbiont.

Stand Genomic Sci 2018 5;13:36. Epub 2018 Dec 5.

Institute of Genetics, Faculty of Biology, Ludwig-Maximilians-University Munich, Munich, Germany.

Rhizobia bacteria engage in nitrogen-fixing root nodule symbiosis, a mutualistic interaction with legume plants in which a bidirectional nutrient exchange takes place. Occasionally, this interaction is suboptimal resulting in the formation of ineffective nodules in which little or no atmospheric nitrogen fixation occurs. Norway induces ineffective nodules in a wide range of hosts. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-018-0336-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6280393PMC
December 2018
9 Reads

Draft genomes of strains isolated from dried spices bring unique insights into the diversity of plant-associated strains.

Stand Genomic Sci 2018 29;13:35. Epub 2018 Nov 29.

1Center of Food Safety and Applied Nutrition, U. S. Food and Drug Administration, 8301 Muirkirk Road, Laurel, MD 20708 USA.

is a Gram-negative opportunistic pathogen that causes life- threatening infantile infections, such as meningitis, septicemia, and necrotizing enterocolitis, as well as pneumonia, septicemia, and urinary tract and wound infections in adults. Here, we report 26 draft genome sequences of , which were obtained from dried spices from the USA, the Middle East, China, and the Republic of Korea. The average genome size of the genomes was 4393 kb, with an average of 4055 protein coding genes, and an average genome G + C content of 56. Read More

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http://dx.doi.org/10.1186/s40793-018-0339-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6267090PMC
November 2018
14 Reads

High-quality-draft genome sequence of the heavy metal resistant and exopolysaccharides producing bacterium TBZ30.

Stand Genomic Sci 2018 28;13:34. Epub 2018 Nov 28.

State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 People's Republic of China.

TBZ30 (= CCTCC AB 2015301 = KCTC 42833) is a Gram- negative, rod-shaped, non-motile and non-spore-forming bacterium isolated from a heavy metal contaminated paddy field. It shows resistance to multiple heavy metals and can adsorb/remove Zn and Cd during cultivation. In addition, strain TBZ30 produces exopolysaccharides (EPS). Read More

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http://dx.doi.org/10.1186/s40793-018-0337-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6260751PMC
November 2018
1 Read

Complete genome sequence of SM1504, a cytophagaceae bacterium isolated from Arctic surface seawater.

Stand Genomic Sci 2018 26;13:33. Epub 2018 Nov 26.

1State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, No.72, Binhai Rd, Qingdao, 266237 China.

SM1504 was isolated from Arctic surface seawater and classified as a novel genus of the phylum . To date, no genomes have been reported, their genomic compositions and metabolic features are still unknown. Here, we reported the complete genome sequence of SM1504, which comprises 5,379,839 bp with an average GC content of 37. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-018-0335-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6258284PMC
November 2018
9 Reads

The draft genome sequence of "" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge.

Stand Genomic Sci 2018 22;13:32. Epub 2018 Nov 22.

1Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, Netherlands.

The genus is considered to be the most widespread and abundant group of nitrite-oxidizing bacteria in many natural and man-made ecosystems. However, the ecophysiological versatility within this phylogenetic group remains highly understudied, mainly due to the lack of pure cultures and genomic data. To further expand our understanding of this biotechnologically important genus, we analyzed the high quality draft genome of "" strain BS10, a sublineage II that was isolated from a municipal wastewater treatment plant in Hamburg, Germany. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-018-0338-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251164PMC
November 2018
2 Reads

Complete genome sequence of sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants.

Stand Genomic Sci 2018 9;13:31. Epub 2018 Nov 9.

1Research Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, 56212 Republic of Korea.

The sp. PAMC21323 is a yellow pigment-producing bacterium isolated from King George Island in Antarctica; it has a broad growth temperature range of 5-40 °C. Herein, we describe the complete genome sequence information of the genus with its annotated sequence, genetic features for bioremediation, and oxidative stress capacity. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-018-0334-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6225704PMC
November 2018
9 Reads
3.170 Impact Factor

Draft genome sequence of subsp. strain Fito_F321, an endophyte microorganism from with biocontrol potential.

Stand Genomic Sci 2018 1;13:30. Epub 2018 Nov 1.

Biocant - Biotechnology Innovation Center, Cantanhede, Portugal.

strain Fito_F321 is a naturally occurring strain in vineyard, with the ability to colonise grapevine and which unveils a naturally antagonistic potential against phytopathogens of grapevine, including those responsible for the dieback, a GTD disease. Herein we report the draft genome sequence of subsp. Fito_F321, isolated from the leaf of cv. Read More

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http://dx.doi.org/10.1186/s40793-018-0327-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211603PMC
November 2018
11 Reads

High-quality-draft genome sequence of the multiple heavy metal resistant bacterium JH-7.

Stand Genomic Sci 2018 25;13:29. Epub 2018 Oct 25.

State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070 People's Republic of China.

JH-7 (= KCTC 52258 = CCTCC AB 2016107) is a Gram-staining-negative, aerobic and non-motile strain that was isolated from a manganese mine The strain JH-7 shows multiple heavy metal resistance and can effectively remove Mn and Cd. In addition, it is able to produce exopolysaccharides (EPS), which may contribute to metal remove/adsorption. Thus, strain JH-7 shows a great potential in bioremediation of heavy metal-contaminated environment. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-018-0330-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6203287PMC
October 2018
5 Reads

Complete genome sequence of the nitrogen-fixing bacterium type strain SgZ-5.

Stand Genomic Sci 2018 16;13:28. Epub 2018 Oct 16.

3Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.

The strain SgZ-5, belonging to the Order and the Family , was isolated from a microbial fuel cell inoculated with paddy soil. A previous work has shown that strain SgZ-5 was able to fix atmospheric nitrogen involved in plant growth promotion. Here we present the complete genome of SgZ-5, which consists of a circular chromosome and six plasmids with the total genome size of 6,834,379 bp and the average GC content of 67. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-018-0322-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6192227PMC
October 2018
13 Reads

Draft genomes of "" strains isolated from fresh water in France.

Stand Genomic Sci 2018 12;13:27. Epub 2018 Oct 12.

Institute of Ecology and Environmental sciences-Paris, Sorbonne Université, INRA, 4 place Jussieu, F-75 252 Paris, France.

Bacteria belonging to the genus are responsible for soft rot disease on a wide range of cultivated crops. The "" specie, recently proposed inside the genus, gathers strains isolated from potato tubers cultivated in Peru at high altitude. Here we report the draft genome sequence of two strains belonging to "" isolated from river water in France indicating that the geographic distribution of this specie is likely to be larger than previously anticipated. Read More

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http://dx.doi.org/10.1186/s40793-018-0332-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6186074PMC
October 2018
2 Reads

Draft genome sequences of strains CS-508 and MVCC14, isolated from freshwater bloom events in Australia and Uruguay.

Stand Genomic Sci 2018 12;13:26. Epub 2018 Oct 12.

1Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, 8331150 Santiago, Chile.

Members of the genus represent an important environmental and health concern. Strains CS-508 and MVCC14 of were isolated from freshwater reservoirs located in Australia and Uruguay, respectively. While CS-508 has been reported as non-toxic, MVCC14 is a saxitoxin (STX) producer. Read More

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http://dx.doi.org/10.1186/s40793-018-0323-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6186047PMC
October 2018
1 Read

Insights into the draft genome sequence of bioactives-producing DNG9 isolated from Algerian soil-oil slough.

Stand Genomic Sci 2018 11;13:25. Epub 2018 Oct 11.

3Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2 Canada.

is widely used as a bioinsecticide due to its ability to form parasporal crystals containing proteinaceous toxins. It is a member of the sensu , a group with low genetic diversity but produces several promising antimicrobial compounds. DNG9, isolated from an oil-contaminated slough in Algeria, has strong antibacterial, antifungal and biosurfactant properties. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-018-0331-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6186030PMC
October 2018
9 Reads

Draft genome sequences of ' Chloroploca asiatica' and ' Viridilinea mediisalina', candidate representatives of the order: phylogenetic and taxonomic implications.

Stand Genomic Sci 2018 11;13:24. Epub 2018 Oct 11.

1Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation.

' Chloroploca asiatica' B7-9 and ' Viridilinea mediisalina' Kir15-3F are mesophilic filamentous anoxygenic phototrophic bacteria from alkaline aquatic environments. Both bacteria became available in the last few years and only in stable enrichment culture. In this study, we report the draft genomic sequences of '. Read More

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http://dx.doi.org/10.1186/s40793-018-0329-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180586PMC
October 2018
1 Read

The complete genomic sequence of a novel cold-adapted bacterium, Y42, isolated from crude oil-contaminated soil.

Stand Genomic Sci 2018 10;13:23. Epub 2018 Oct 10.

Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou, 730000 Gansu Province China.

Y42, isolated from the petroleum-contaminated soil of the Qaidam Basin, can use crude oil as its sole source of carbon and energy at 20 °C. The genome of strain Y42 has been sequenced to provide information on its properties. Genomic analysis shows that the genome of strain Y42 contains one circular DNA chromosome with a size of 3,718,896 bp and a GC content of 48. Read More

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http://dx.doi.org/10.1186/s40793-018-0328-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180392PMC
October 2018
1 Read
3.170 Impact Factor

One complete and three draft genome sequences of four strains, CD 337, TAP 175, BSAS1 3 and EBP 3070.

Stand Genomic Sci 2018 10;13:22. Epub 2018 Oct 10.

1UMR 1014 SECALIM, INRA, Oniris, Nantes, France.

is one of the dominant bacterial species associated with spoilage of chilled meat and seafood products through the production of various metabolites responsible for off-odors. However, metabolic pathways leading to meat and seafood spoilage are not all well known. The production of spoiling molecules seems to depend both on strains and on food matrix. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
Publisher Site
http://dx.doi.org/10.1186/s40793-018-0333-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180393PMC
October 2018
6 Reads

First genome sequencing and comparative analyses of strains from Mexico.

Stand Genomic Sci 2018 10;13:21. Epub 2018 Oct 10.

1Laboratory of Cellular and Molecular Genetics, Institute of Biologic Sciences, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.

is a pathogenic bacterium which has been rapidly spreading all over the world, causing economic losses in the agricultural sector and sporadically infecting humans. Six strains were isolated from goats, sheep, and horses with distinct abscess locations. For the first time, Mexican genomes of this bacterium were sequenced and studied in silico. Read More

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http://dx.doi.org/10.1186/s40793-018-0325-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180578PMC
October 2018
4 Reads

Functional and taxonomic classification of a greenhouse water drain metagenome.

Stand Genomic Sci 2018 5;13:20. Epub 2018 Oct 5.

1Departamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, 62210 Morelos Mexico.

Microbiome sequencing has become the standard procedure in the study of new ecological and human-constructed niches. To our knowledge, this is the first report of a metagenome from the water of a greenhouse drain. We found that the greenhouse is not a diverse niche, mainly dominated by and Rodobacterales. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
Publisher Site
http://dx.doi.org/10.1186/s40793-018-0326-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173933PMC
October 2018
14 Reads

Complete genome sequence of the halophile bacterium X49, isolated from salt-fermented .

Stand Genomic Sci 2018 1;13:19. Epub 2018 Oct 1.

1Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, 1 Hoegi-dong, Dongdaemun-gu, Seoul, South Korea.

X49 is a member of the family within the order and can be isolated from salt-fermented larval gizzard shad. The genome of X49 reported here provides a genetic basis for its halophilic character. Diverse genes were involved in salt-in and -out strategies enabling adaptation of X49 to hypersaline environments. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
Publisher Site
http://dx.doi.org/10.1186/s40793-018-0324-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6167781PMC
October 2018
2 Reads

Complete genome sequence of the L. symbiont CCNWGS0123.

Stand Genomic Sci 2018 18;13:18. Epub 2018 Sep 18.

Department of Liquor Making Engineering, Moutai College, 564500 Renhuai, People's Republic of China.

CCNWGS0123 was isolated in 2006, from effective nodules of L. grown in lead-zinc mine tailing site, in Gansu Province, China. CCNWGS0123 is an aerobic, Gram-negative, non-spore-forming rod strain. Read More

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http://dx.doi.org/10.1186/s40793-018-0321-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6145117PMC
September 2018
5 Reads
3.170 Impact Factor

A standardized workflow for submitting data to the Minimum Information about a Biosynthetic Gene cluster (MIBiG) repository: prospects for research-based educational experiences.

Stand Genomic Sci 2018 11;13:16. Epub 2018 Jul 11.

2Bioinformatics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands.

Microorganisms utilize complex enzymatic pathways to biosynthesize structurally complex and pharmacologically relevant molecules. These pathways are encoded by gene clusters and are found in a diverse set of organisms. The Minimum Information about a Biosynthetic Gene cluster repository facilitates standardized and centralized storage of experimental data on these gene clusters and their molecular products, by utilizing user-submitted data to translate scientific discoveries into a format that can be analyzed computationally. Read More

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http://dx.doi.org/10.1186/s40793-018-0318-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6042397PMC
July 2018
4 Reads

Correction to: Complete genome of a novel virulent phage ST0 lysing H8.

Stand Genomic Sci 2018 4;13:15. Epub 2018 Jul 4.

College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049 China.

[This corrects the article DOI: 10.1186/s40793-017-0304-9.]. Read More

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http://dx.doi.org/10.1186/s40793-018-0319-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030789PMC
July 2018
2 Reads

Complete genome sequence of "" sp. nov. strain Cad16, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

Stand Genomic Sci 2018 9;13:14. Epub 2018 May 9.

1University of Geneva, Sciences III, Department of Botany and Plant Biology, Microbiology Unit, 1211 Geneva, Switzerland.

" sp. nov. strain Cad16 is a photoautotrophic purple sulfur bacterium belonging to the family of in the class of . Read More

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http://dx.doi.org/10.1186/s40793-018-0317-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944118PMC
May 2018
1 Read

Short genome report of cellulose-producing commensal 1094.

Stand Genomic Sci 2018 9;13:13. Epub 2018 May 9.

1Département de Microbiologie, Unité de Génétique des Biofilms, Institut Pasteur, 25-28 rue du Dr. Roux, F-75015 Paris, France.

Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In and many and cellulose is often the main component of the extracellular matrix. Here we report the complete genome sequence of the cellulose producing strain 1094 and compare it with five other closely related genomes within phylogenetic group A. Read More

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http://dx.doi.org/10.1186/s40793-018-0316-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944007PMC
May 2018
1 Read

High quality draft genome sequences of strains PS6 and 723 isolated from tortoises with upper respiratory tract disease.

Stand Genomic Sci 2018 27;13:12. Epub 2018 Apr 27.

1Biology Department, University of Nevada, Reno, USA.

is one of the known causative agents of upper respiratory tract disease (URTD) in Mojave desert tortoises () and in gopher tortoises (). We sequenced the genomes of strains PS6 (ATCC 700616) and 723 (ATCC 700617) isolated from the upper respiratory tract of a Mojave desert tortoise and a gopher tortoise, respectively, both with signs of URTD. The PS6 genome assembly was organized in eight scaffolds, had a total length of 1,274,972 bp, a G + C content of 28. Read More

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http://dx.doi.org/10.1186/s40793-018-0315-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5921776PMC
April 2018
1 Read

Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing ERGS5:01.

Stand Genomic Sci 2018 19;13:11. Epub 2018 Apr 19.

Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Post BoxNo.06, Palampur, Himachal Pradesh 176 061 India.

A light pink coloured bacterial strain ERGS5:01 isolated from glacial stream water of Sikkim Himalaya was affiliated to based on 16S rRNA gene sequence identity and phylogenetic clustering. Whole genome sequencing was performed for the strain to confirm its taxonomy as it lacked the typical violet pigmentation of the genus and also to decipher its survival strategy at the aquatic ecosystem of high elevation. The PacBio RSII sequencing generated genome of 5,168,928 bp with 4575 protein-coding genes and 118 RNA genes. Read More

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http://dx.doi.org/10.1186/s40793-018-0313-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5909252PMC
April 2018
3 Reads

High-quality draft genome of the methanotroph Str. HV10-M2 isolated from plant material at a high-altitude environment.

Stand Genomic Sci 2018 12;13:10. Epub 2018 Apr 12.

1Department of Biology, University of Bergen, Bergen, Norway.

Here we present the genome of strain HV10-M2, a methanotroph isolated from Hardangervidda national park (Norway). This strain represents the second of the two validly published species genus with a sequenced genome. The other is HT12, which is the type strain of the species and the type species of the genus We present the genome of str. Read More

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http://dx.doi.org/10.1186/s40793-018-0314-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5898042PMC
April 2018
3 Reads

High quality draft genome sequence of strain BH29, isolated from the respiratory tract of a desert tortoise.

Stand Genomic Sci 2018 11;13. Epub 2018 Apr 11.

1Biology Department, University of Nevada, Reno, USA.

is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, . We sequenced the genome of BH29 (ATCC 700618 = MCCM 03231), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease. The sequenced draft genome, organized in 25 scaffolds, has a length of 960,895 bp and a G + C content of 27. Read More

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http://dx.doi.org/10.1186/s40793-018-0309-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896096PMC
April 2018
1 Read

Draft genome sequence of strain SIT8, isolated from the human gut.

Stand Genomic Sci 2018 11;13. Epub 2018 Apr 11.

1Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm1095, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Universitaire Méditerranée-infection, 19-21 Bd Jean Moulin, 13385 Marseille, cedex 5 France.

We report the properties of a draft genome sequence of the bacterium strain SIT8 (= CSUR P1560). This strain, whose genome is described here, was isolated from the fecal flora of a healthy 28-month-old Senegalese boy. Strain SIT8 is a facultatively anaerobic Gram-negative bacillus. Read More

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http://dx.doi.org/10.1186/s40793-018-0310-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896035PMC
April 2018
17 Reads
3.170 Impact Factor

Genome sequence of type strain (SH6-1), a representative of the group isolated from the North Sea during a phytoplankton bloom.

Stand Genomic Sci 2018 11;13. Epub 2018 Apr 11.

1Institute for Chemistry and Biology of the Marine Environment (ICBM), University of Oldenburg, Oldenburg, Germany.

SH6-1 Hahnke et al. (Int J Syst Evol Microbiol 62:1619-24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the group within the alphaproteobacterial family . Read More

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http://dx.doi.org/10.1186/s40793-018-0311-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896138PMC
April 2018
2 Reads

Draft genome sequence of sp. WAO an arsenite and sulfide oxidizer isolated from a pyrite rock outcrop in New Jersey.

Stand Genomic Sci 2018 10;13. Epub 2018 Apr 10.

2Department of Environmental Sciences, Rutgers University, The State University of New Jersey, New Brunswick, New Jersey USA.

This genome report describes the draft genome and physiological characteristics of sp. WAO (=DSM 102914), a novel strain of the genus in the family . sp. Read More

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http://dx.doi.org/10.1186/s40793-018-0312-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894208PMC
April 2018
3 Reads

Correction to: Y92-1009 complete genome sequence.

Stand Genomic Sci 2018 16;13. Epub 2018 Feb 16.

1Faculty of Medicine, Southampton NIHR Biomedical Research Centre and Institute for Life Sciences, University of Southampton, Southampton, UK.

[This corrects the article DOI: 10.1186/s40793-017-0250-6.]. Read More

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http://dx.doi.org/10.1186/s40793-017-0288-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5815239PMC
February 2018
3 Reads

Complete genome sequence of JAB1 (=DSM 26533), a versatile degrader of organic pollutants.

Stand Genomic Sci 2018 1;13. Epub 2018 Feb 1.

2Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Prague, Czech Republic.

In this study, following its isolation from contaminated soil, the genomic sequence of strain JAB1 (=DSM 26533), a biphenyl-degrading bacterium, is reported and analyzed in relation to its extensive degradative capabilities. The JAB1 genome (GenBank accession no. CP016162) consists of a single 5. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
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http://dx.doi.org/10.1186/s40793-017-0306-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5796565PMC
February 2018
10 Reads

Draft genome sequence of MB-PO13, a hyaluromycin producer.

Stand Genomic Sci 2018 11;13. Epub 2018 Jan 11.

1Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, Toyama, Japan.

MB-PO13 (=NBRC 110483 = DSM 100105) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11. Read More

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http://dx.doi.org/10.1186/s40793-017-0286-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765640PMC
January 2018
3 Reads

Genomic insights into human colonization.

Stand Genomic Sci 2018 8;13. Epub 2018 Jan 8.

Evolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Irapuato, Mexico.

(Karassova V, Weissfeiler J, Kraszanay E, Acta Microbiol Acad Sci Hung 12:275-82, 1965) is a slow-growing nontuberculous species found in environmental niches, and recently evidenced as an opportunistic Human pathogen. We report here the genome of a clinical isolate of (MsiGto) obtained from a patient in Guanajuato, Mexico. With a size of 6,684,413 bp, the genomic sequence of strain MsiGto is the largest of the three genomes reported to date. Read More

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http://dx.doi.org/10.1186/s40793-017-0291-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5759803PMC
January 2018
3 Reads

Genome sequence of JL1095T (DSM 28604T) isolated from the Yangtze Estuary.

Stand Genomic Sci 2017 29;12:91. Epub 2017 Dec 29.

State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, 361102 People's Republic of China.

JL1095 is a proteobacterium from a genus belonging to the family ; it was isolated from surface waters of the Yangtze Estuary, China. This strain displays the capability to utilize aromatic and simple carbon compounds. Here, we present the genome sequence, annotations, and features of JL1095. Read More

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http://dx.doi.org/10.1186/s40793-017-0295-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747140PMC
December 2017
6 Reads

Genome of Russian wheat aphid an economically important cereal aphid.

Stand Genomic Sci 2017 28;12:90. Epub 2017 Dec 28.

University of Stellenbosch, Private Bag X1, Matieland, Stellenbosch, Western Cape 7602 South Africa.

Although the hemipterans (Aphididae) are comprised of roughly 50,000 extant insect species, only four have sequenced genomes that are publically available, namely (pea aphid), (Kissing bug), (Green peach aphid) and (Russian wheat aphid). As a significant proportion of agricultural pests are phloem feeding aphids, it is crucial for sustained global food security that a greater understanding of the genomic and molecular functioning of this family be elucidated. Recently, the genome of US biotype US2 was sequenced but its assembly only incorporated ~ 32% of produced reads and contained a surprisingly low gene count when compared to that of the model/first sequenced aphid, . Read More

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http://dx.doi.org/10.1186/s40793-017-0307-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5745598PMC
December 2017
3 Reads

The draft genome of strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains.

Stand Genomic Sci 2017 22;12:89. Epub 2017 Dec 22.

Corporación Colombiana de Investigación Agropecuaria - Corpoica. Centro de Investigación Tibaitatá, Mosquera - Bogotá, Cundinamarca Colombia.

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http://dx.doi.org/10.1186/s40793-017-0299-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741917PMC
December 2017
12 Reads

Complete genome sequence of esterase-producing bacterium E4A9.

Stand Genomic Sci 2017 21;12:88. Epub 2017 Dec 21.

Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, 36th North BaoChu Road, Hangzhou, 310012 China.

E4A9was isolated from deep-sea sediment collected from the East Pacific polymetallic nodule area. The strain is able to produce esterase, which is widely used in the food, perfume, cosmetic, chemical, agricultural and pharmaceutical industries. Here we describe the characteristics of strain E4A9, including the genome sequence and annotation, presence of esterases, and metabolic pathways of the organism. Read More

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http://dx.doi.org/10.1186/s40793-017-0300-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5740743PMC
December 2017
9 Reads

Genome sequence of the model plant pathogen SCC1.

Stand Genomic Sci 2017 20;12:87. Epub 2017 Dec 20.

Plant Pathology, Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland.

Bacteria of the genus are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the early 1980's. The genome of strain SCC1 consists of one circular chromosome of 4,974,798 bp and one circular plasmid of 5524 bp. Read More

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http://dx.doi.org/10.1186/s40793-017-0301-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738896PMC
December 2017
4 Reads

Draft genome sequence of DSM 21565 an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring.

Stand Genomic Sci 2017 20;12:86. Epub 2017 Dec 20.

Unidad de Saneamiento y Biotecnología Ambiental, Departamento de Biología, Pontificia Universidad Javeriana, POB 56710, Bogotá, DC Colombia.

A bacterium belonging to the phylum , genus was isolated in 2007 from a saline spring in Colombia. USBA 82 ( is a mesophilic, strictly anaerobic, slightly halophilic, Gram negative bacterium with a diderm cell envelope. The strain ferments peptides, amino acids and a few organic acids. Read More

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http://dx.doi.org/10.1186/s40793-017-0303-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738826PMC
December 2017
32 Reads

Complete genome of a novel virulent phage ST0 lysing H8.

Stand Genomic Sci 2017 19;12:85. Epub 2017 Dec 19.

College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049 China.

Phage ST0 lysing H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA genome, consisting of 170,496 nucleotides with an average G + C content of 37.67%. Read More

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http://dx.doi.org/10.1186/s40793-017-0304-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738172PMC
December 2017
3 Reads

Draft genome sequence of CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile.

Stand Genomic Sci 2017 19;12:84. Epub 2017 Dec 19.

Centro de Biotecnología "Profesor Alberto Ruiz", Universidad Católica del Norte, 1270709 Antofagasta, Chile.

10.1601/nm.2199 CLST is an extremely acidophilic gamma-proteobacteria that was isolated from the Gorbea salt flat, an acidic hypersaline environment in northern Chile. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
Publisher Site
http://dx.doi.org/10.1186/s40793-017-0305-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5735861PMC
December 2017
15 Reads

Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium ARB-1.

Stand Genomic Sci 2017 18;12:82. Epub 2017 Dec 18.

Department of Civil and Environmental Engineering, University of Utah, Salt Lake City, UT USA.

A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against strain ARB-1. The strain ARB-1 belongs to the family of the class. Read More

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http://dx.doi.org/10.1186/s40793-017-0290-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5735904PMC
December 2017
4 Reads

Draft genome sequences of three fungal-interactive strains, BS007, BS110 and BS437.

Stand Genomic Sci 2017 18;12:81. Epub 2017 Dec 18.

Department of Microbial Ecology, Microbial Ecology - Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh 7, Groningen, 9747 AG The Netherlands.

Here, we report the draft genome sequences of three fungal-interactive 10.1601/nm.27008 strains, denoted BS110, BS007 and BS437. Read More

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http://dx.doi.org/10.1186/s40793-017-0293-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5735546PMC
December 2017
4 Reads

Complete genome sequence analysis of strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field.

Stand Genomic Sci 2017 16;12:79. Epub 2017 Dec 16.

Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7b, 38124 Braunschweig, Germany.

is the type species of genus Stetter 1998, a hyperthermophilic sulfate reducing group within the class of the euryarchaeota phylum. Members of this genus grow heterotrophically or chemolithoautotrophically with sulfate or thiosulfate as electron acceptors. Except for strain 7324 and the candidate species "", which both originate from deep oil-fields, the other members of this genus have been recovered from marine hydrothermal systems. Read More

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http://dx.doi.org/10.1186/s40793-017-0296-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5732400PMC
December 2017
4 Reads

Draft genome of TNe-841, a free-living, nitrogen-fixing, tomato plant-associated bacterium.

Stand Genomic Sci 2017 16;12:80. Epub 2017 Dec 16.

Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás Del. Miguel Hidalgo, C.P. 11340 Mexico City, Mexico.

10.1601/nm.26956 is a plant-associated bacterium. Read More

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https://standardsingenomics.biomedcentral.com/articles/10.11
Publisher Site
http://dx.doi.org/10.1186/s40793-017-0294-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5732367PMC
December 2017
20 Reads
3.170 Impact Factor

Draft genome sequence of strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.

Stand Genomic Sci 2017 15;12:78. Epub 2017 Dec 15.

Unidad de Saneamiento y Biotecnología Ambiental (USBA), Departamento de Biología, Pontificia Universidad Javeriana, POB 56710, Bogotá, DC Colombia.

Here we present the physiological features of strain USBA-GBX-515 (), isolated from soils in Superparamo ecosystems, > 4000 m.a.s. Read More

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http://dx.doi.org/10.1186/s40793-017-0292-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731063PMC
December 2017
27 Reads

Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, (DSM 14366).

Stand Genomic Sci 2017 15;12:77. Epub 2017 Dec 15.

Fundación Ciencia & Vida, Av. Zañartu 1482, Santiago, 7780272 Chile.

is an extremely acidophilic, mesophilic, obligatory autotrophic sulfur-oxidizer, with potential importance in the bioleaching of sulfidic metal ores, first described in the 1980s. Here we present the draft genome sequence of DSM 14366, thereby both filling a long-standing gap in the genomics of the acidithiobacilli, and providing further insight into the understanding of the biology of the non iron-oxidizing members of the genus. The assembled genome is 3,1 Mb, and contains 47 tRNAs, tmRNA gene and 2 rRNA operons, along with 3149 protein-coding predicted genes. Read More

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http://dx.doi.org/10.1186/s40793-017-0282-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731081PMC
December 2017
7 Reads

High-quality draft genome sequence of strain skLN1, facultative anaerobic spore-former isolated from freshwater lake sediment.

Stand Genomic Sci 2017 13;12:76. Epub 2017 Dec 13.

Institute of Low Temperature Science, Hokkaido University, Nishi 8, Kita 19, Kita-ku, Sapporo, Hokkaido 060-0819 Japan.

10.1601/nm.25721 strain skLN1 is the type strain of the type species in the genus 10. Read More

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http://dx.doi.org/10.1186/s40793-017-0302-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5729459PMC
December 2017
4 Reads