The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

J Biomed Semantics 2013 Feb 11;4(1). Epub 2013 Feb 11.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo, 113-0032, Japan.

Background: BioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series is to improve the quality and accessibility of life science research data on the Web by bringing together representatives from public databases, analytical tool providers, and cyber-infrastructure researchers to jointly tackle important challenges in the area of in silico biological research.

Results: The theme of BioHackathon 2010 was the 'Semantic Web', and all attendees gathered with the shared goal of producing Semantic Web data from their respective resources, and/or consuming or interacting those data using their tools and interfaces. We discussed on topics including guidelines for designing semantic data and interoperability of resources. We consequently developed tools and clients for analysis and visualization.

Conclusion: We provide a meeting report from BioHackathon 2010, in which we describe the discussions, decisions, and breakthroughs made as we moved towards compliance with Semantic Web technologies - from source provider, through middleware, to the end-consumer.

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-4-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3598643PMC
February 2013
75 Reads

Publication Analysis

Top Keywords

biohackathon 2010
12
semantic web
12
life science
8
web technologies
8
science data
8
data
5
biohackathon
5
cyber-infrastructure researchers
4
meeting report
4
providers cyber-infrastructure
4
provide meeting
4
researchers jointly
4
consuming interacting
4
challenges area
4
tackle challenges
4
visualizationconclusion provide
4
jointly tackle
4
interacting data
4
analytical tool
4
describe discussions
4

References

(Supplied by CrossRef)

Similar Publications