Publications by authors named "Ziding Zhang"

100Publications

Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors.

mSystems 2020 Nov 3;5(6). Epub 2020 Nov 3.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China

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November 2020

Tobacco Necrosis Virus-A Single Coat Protein Amino Acid Substitutions Determine Host-Specific Systemic Infections of and Soybean.

Mol Plant Microbe Interact 2021 Jan 19;34(1):49-61. Epub 2020 Nov 19.

State Key Laboratory of Agro-Biotechnology and Ministry of Agriculture Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100193, P. R. China.

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January 2021

Characterization of Calcium-Dependent Protein Kinases 3, a Protein Involved in Growth of .

Front Microbiol 2020 8;11:907. Epub 2020 May 8.

Key Laboratory of Zoonosis of Ministry of Agriculture, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.

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May 2020

The MERS-CoV Receptor DPP4 as a Candidate Binding Target of the SARS-CoV-2 Spike.

iScience 2020 Jun 13;23(6):101160. Epub 2020 May 13.

Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China; Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China; China-Africa Research Center of Infectious Diseases, Central South University, Changsha 410013, China. Electronic address:

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June 2020

PlaPPISite: a comprehensive resource for plant protein-protein interaction sites.

BMC Plant Biol 2020 Feb 6;20(1):61. Epub 2020 Feb 6.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China.

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February 2020

Prediction of human-virus protein-protein interactions through a sequence embedding-based machine learning method.

Comput Struct Biotechnol J 2020 26;18:153-161. Epub 2019 Dec 26.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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December 2019

The hybrid protein interactome contributes to rice heterosis as epistatic effects.

Plant J 2020 04 13;102(1):116-128. Epub 2019 Dec 13.

National Maize Improvement Center, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China.

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April 2020

Enhancing thermostability of a psychrophilic alpha-amylase by the structural energy optimization in the trajectories of molecular dynamics simulations.

Int J Biol Macromol 2020 Jan 14;142:624-633. Epub 2019 Oct 14.

Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.

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January 2020

Understanding Human-Virus Protein-Protein Interactions Using a Human Protein Complex-Based Analysis Framework.

mSystems 2019 Mar-Apr;4(2). Epub 2019 Apr 9.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.

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April 2019

Machine-Learning-Based Predictor of Human-Bacteria Protein-Protein Interactions by Incorporating Comprehensive Host-Network Properties.

J Proteome Res 2019 05 22;18(5):2195-2205. Epub 2019 Apr 22.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences , China Agricultural University , Beijing 100193 , China.

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May 2019

Expression patterns and ligand binding characterization of Plus-C odorant-binding protein 14 from Adelphocoris lineolatus (Goeze).

Comp Biochem Physiol B Biochem Mol Biol 2019 Jan 5;227:75-82. Epub 2018 Oct 5.

State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China. Electronic address:

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January 2019

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System.

Genomics Proteomics Bioinformatics 2018 08 26;16(4):283-293. Epub 2018 Sep 26.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China. Electronic address:

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August 2018

Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii.

PLoS Genet 2018 05 24;14(5):e1007428. Epub 2018 May 24.

State Key Laboratory of Agrobiotechnology, and College of Biological Sciences, China Agricultural University, Beijing, China.

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May 2018

An Important Role for Purifying Selection in Archaeal Genome Evolution.

mSystems 2017 Sep-Oct;2(5). Epub 2017 Oct 24.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.

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October 2017

Critical assessment and performance improvement of plant-pathogen protein-protein interaction prediction methods.

Brief Bioinform 2019 01;20(1):274-287

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University.

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January 2019

Network Analysis Reveals a Common Host-Pathogen Interaction Pattern in Immune Responses.

Front Plant Sci 2017 29;8:893. Epub 2017 May 29.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural UniversityBeijing, China.

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May 2017

Large-scale transcriptome analysis reveals arabidopsis metabolic pathways are frequently influenced by different pathogens.

Plant Mol Biol 2017 Jul 24;94(4-5):453-467. Epub 2017 May 24.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.

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July 2017

Pathogenicity Genes in Ustilaginoidea virens Revealed by a Predicted Protein-Protein Interaction Network.

J Proteome Res 2017 03 7;16(3):1193-1206. Epub 2017 Feb 7.

Department of Plant Pathology and the Ministry of Agriculture Key Laboratory for Plant Pathology, China Agricultural University , Beijing 100193, China.

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March 2017

Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection.

Sci Rep 2016 10 10;6:35064. Epub 2016 Oct 10.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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October 2016

Cyanidin-3-o-glucoside directly binds to ERα36 and inhibits EGFR-positive triple-negative breast cancer.

Oncotarget 2016 Oct;7(42):68864-68882

State Key Laboratory of the Agro-Biotechnology, College of Horticultural Science, China Agricultural University, Beijing, China.

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October 2016

AraPPISite: a database of fine-grained protein-protein interaction site annotations for Arabidopsis thaliana.

Plant Mol Biol 2016 Sep 23;92(1-2):105-16. Epub 2016 Jun 23.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China.

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September 2016

SPAR: a random forest-based predictor for self-interacting proteins with fine-grained domain information.

Amino Acids 2016 07 13;48(7):1655-65. Epub 2016 Apr 13.

Infection and Immunity Program, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC, 3800, Australia.

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July 2016

Transcriptome analysis reveals physiological characteristics required for magnetosome formation in Magnetospirillum gryphiswaldense MSR-1.

Environ Microbiol Rep 2016 06 16;8(3):371-81. Epub 2016 May 16.

State Key Laboratory for Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, P. R. China.

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June 2016

Identification of WD40 repeats by secondary structure-aided profile-profile alignment.

J Theor Biol 2016 06 25;398:122-9. Epub 2016 Mar 25.

National Engineering Laboratory for Industrial Enzymes and Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC 3800, Australia; Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia. Electronic address:

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June 2016

Crysalis: an integrated server for computational analysis and design of protein crystallization.

Sci Rep 2016 Feb 24;6:21383. Epub 2016 Feb 24.

Monash Centre for Data Science, Faculty of Information Technology, Monash University, Melbourne, VIC 3800, Australia.

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February 2016

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features.

Nucleic Acids Res 2016 06 20;44(10):e91. Epub 2016 Feb 20.

Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, Beijing 100191, China MOE Key Lab of Molecular Cardiovascular Sciences, Peking University, Beijing 100191, China Center for Noncoding RNA Medicine, Peking University Health Science Center, Beijing 100191, China

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June 2016

MucR Is Required for Transcriptional Activation of Conserved Ion Transporters to Support Nitrogen Fixation of Sinorhizobium fredii in Soybean Nodules.

Mol Plant Microbe Interact 2016 May 31;29(5):352-61. Epub 2016 Mar 31.

1 State Key Laboratory of Agrobiotechnology, and College of Biological Sciences, China Agricultural University, Beijing, China;

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May 2016

AtKC1 and CIPK23 Synergistically Modulate AKT1-Mediated Low-Potassium Stress Responses in Arabidopsis.

Plant Physiol 2016 04 1;170(4):2264-77. Epub 2016 Feb 1.

State Key Laboratory of Plant Physiology and Biochemistry, National Plant Gene Research Centre (X.-P.W., L.-M.C., W.-X.L., L.-K.S., F.-L.W., W.-H.W., Y.W.), and State Key Laboratory of Agrobiotechnology (Y.Z., Z.Z.), College of Biological Sciences, China Agricultural University, Beijing 100193, China

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April 2016

Network-Based Comparative Analysis of Arabidopsis Immune Responses to Golovinomyces orontii and Botrytis cinerea Infections.

Sci Rep 2016 Jan 11;6:19149. Epub 2016 Jan 11.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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January 2016

MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins.

Database (Oxford) 2015 13;2015. Epub 2015 Nov 13.

State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China

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August 2016

BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors.

Database (Oxford) 2015 27;2015:bav064. Epub 2015 Jun 27.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China

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March 2016

Competition-cooperation relationship networks characterize the competition and cooperation between proteins.

Sci Rep 2015 Jun 25;5:11619. Epub 2015 Jun 25.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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June 2015

Computational Identification of Protein Pupylation Sites by Using Profile-Based Composition of k-Spaced Amino Acid Pairs.

PLoS One 2015 16;10(6):e0129635. Epub 2015 Jun 16.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China.

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April 2016

Revealing shared and distinct gene network organization in Arabidopsis immune responses by integrative analysis.

Plant Physiol 2015 Mar 22;167(3):1186-203. Epub 2015 Jan 22.

State Key Laboratory of Agrobiotechnology (X.D., Z.J., Y.-L.P., Z.Z.), College of Biological Sciences (X.D., Z.J., Z.Z.), and Ministry of Agriculture Key Laboratory for Plant Pathology (Y.-L.P.), China Agricultural University, Beijing 100193, China

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March 2015

Crystal structure of the Locusta migratoria odorant binding protein.

Biochem Biophys Res Commun 2015 Jan 15;456(3):737-42. Epub 2014 Dec 15.

State Key Laboratory of Agrobiotechnology, China Agricultural University, Beijing 100193, China. Electronic address:

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January 2015

Computational characterization of parallel dimeric and trimeric coiled-coils using effective amino acid indices.

Mol Biosyst 2015 Feb 1;11(2):354-60. Epub 2014 Dec 1.

Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, VIC 3800, Australia.

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February 2015

Operating mechanism and molecular dynamics of pheromone-binding protein ASP1 as influenced by pH.

PLoS One 2014 22;9(10):e110565. Epub 2014 Oct 22.

CSIRO - Computational Informatics & Digital Productivity Flagship, Private Bag 10, Clayton South, Australia.

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July 2015

PredPPCrys: accurate prediction of sequence cloning, protein production, purification and crystallization propensity from protein sequences using multi-step heterogeneous feature fusion and selection.

PLoS One 2014 22;9(8):e105902. Epub 2014 Aug 22.

National Engineering Laboratory for Industrial Enzymes and Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China; Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, Victoria, Australia; ARC Centre of Excellence in Structural and Functional Microbial Genomics, Monash University, Melbourne, Victoria, Australia.

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March 2016

Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features.

Sci Rep 2014 Jul 21;4:5765. Epub 2014 Jul 21.

1] National Engineering Laboratory for Industrial Enzymes and Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China [2] Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, Victoria 3800, Australia [3] Faculty of Information Technology, Monash University, Melbourne, Victoria 3800, Australia.

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July 2014

GPCRserver: an accurate and novel G protein-coupled receptor predictor.

Mol Biosyst 2014 Oct;10(10):2495-504

Institute of Applied Genomics, School of Biological Sciences and Engineering, Fuzhou University, Fuzhou 350002, China.

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October 2014

Prediction of outer membrane proteins by combining the position- and composition-based features of sequence profiles.

Mol Biosyst 2014 May;10(5):1004-13

Institute of Applied Genomics, School of Biological Science and Engineering of Fuzhou University, Fuzhou 350002, China.

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May 2014

Structural propensities of human ubiquitination sites: accessibility, centrality and local conformation.

PLoS One 2013 11;8(12):e83167. Epub 2013 Dec 11.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.

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March 2015

ZincExplorer: an accurate hybrid method to improve the prediction of zinc-binding sites from protein sequences.

Mol Biosyst 2013 Sep;9(9):2213-22

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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September 2013

hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.

Biochim Biophys Acta 2013 Aug 19;1834(8):1461-7. Epub 2013 Apr 19.

College of Biological Sciences, China Agricultural University, Beijing, China.

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August 2013

Using weakly conserved motifs hidden in secretion signals to identify type-III effectors from bacterial pathogen genomes.

PLoS One 2013 20;8(2):e56632. Epub 2013 Feb 20.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.

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September 2013

An integrative computational framework based on a two-step random forest algorithm improves prediction of zinc-binding sites in proteins.

PLoS One 2012 14;7(11):e49716. Epub 2012 Nov 14.

National Engineering Laboratory for Industrial Enzymes and Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.

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June 2013

Two distinct sites are essential for virulent infection and support of variant satellite RNA replication in spontaneous beet black scorch virus variants.

J Gen Virol 2012 Dec 12;93(Pt 12):2718-2728. Epub 2012 Sep 12.

State Key Laboratory of Agro-Biotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, PR China.

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December 2012

Comparative analysis of the genomes of two field isolates of the rice blast fungus Magnaporthe oryzae.

PLoS Genet 2012 2;8(8):e1002869. Epub 2012 Aug 2.

State Key Laboratory of Agrobiotechnology and Ministry of Agriculture Key Laboratory of Plant Pathology, China Agricultural University, Beijing, China.

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December 2012

Identification of catalytic residues using a novel feature that integrates the microenvironment and geometrical location properties of residues.

PLoS One 2012 19;7(7):e41370. Epub 2012 Jul 19.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, People's Republic of China.

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December 2012

Can simple codon pair usage predict protein-protein interaction?

Mol Biosyst 2012 Apr 5;8(5):1396-404. Epub 2012 Mar 5.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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April 2012

MDP25, a novel calcium regulatory protein, mediates hypocotyl cell elongation by destabilizing cortical microtubules in Arabidopsis.

Plant Cell 2011 Dec 30;23(12):4411-27. Epub 2011 Dec 30.

State Key Laboratory of Plant Physiology and Biochemistry, Department of Plant Sciences, College of Biological Sciences, China Agricultural University, Beijing, China.

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December 2011

Computational enzyme design approaches with significant biological outcomes: progress and challenges.

Comput Struct Biotechnol J 2012 17;2:e201209007. Epub 2012 Oct 17.

National Engineering Laboratory for Industrial Enzymes and Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, Tianjin 300308, China ; Department of Biochemistry and Molecular Biology and ARC Centre of Excellence in Structural and Functional Microbial Genomics, Monash University, Melbourne, VIC 3800, Australia.

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June 2014

Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes.

BMC Genomics 2011 Dec 23;12:632. Epub 2011 Dec 23.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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December 2011

Predicting residue-residue contacts and helix-helix interactions in transmembrane proteins using an integrative feature-based random forest approach.

PLoS One 2011 28;6(10):e26767. Epub 2011 Oct 28.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.

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March 2012

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium.

Microb Cell Fact 2011 Aug 30;10 Suppl 1:S16. Epub 2011 Aug 30.

Laboratory of Probiogenomics, Department of Genetics, Biology of Microorganisms, Anthropology and Evolution, University of Parma, Italy.

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August 2011

Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.

Comput Biol Chem 2011 Oct 22;35(5):308-18. Epub 2011 Jul 22.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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October 2011

Prediction of ubiquitination sites by using the composition of k-spaced amino acid pairs.

PLoS One 2011 29;6(7):e22930. Epub 2011 Jul 29.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.

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December 2011

Prediction of protein-protein interactions between Ralstonia solanacearum and Arabidopsis thaliana.

Amino Acids 2012 Jun 24;42(6):2363-71. Epub 2011 Jul 24.

State Key Laboratory of Agrobiotechnology, China Agricultural University, Beijing, 100193, China.

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June 2012

Characterization of the MHC class II α-chain gene in ducks.

Immunogenetics 2011 Oct 10;63(10):667-78. Epub 2011 Jun 10.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, People's Republic of China.

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October 2011

A predicted protein-protein interaction network of the filamentous fungus Neurospora crassa.

Mol Biosyst 2011 Jul 16;7(7):2278-85. Epub 2011 May 16.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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July 2011

Functional characterization and immunolocalization of odorant binding protein 1 in the lucerne plant bug, Adelphocoris lineolatus (GOEZE).

Arch Insect Biochem Physiol 2011 Jun 3;77(2):81-99. Epub 2011 May 3.

State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.

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June 2011

Outer membrane proteins can be simply identified using secondary structure element alignment.

BMC Bioinformatics 2011 Mar 17;12:76. Epub 2011 Mar 17.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, PR China.

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March 2011

Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data.

Plant Physiol 2010 Aug 7;153(4):1492-505. Epub 2010 Jun 7.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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August 2010

Characterization of the serpin-encoding gene of Bifidobacterium breve 210B.

Appl Environ Microbiol 2010 May 26;76(10):3206-19. Epub 2010 Mar 26.

Department of Genetics, Biology of Microorganisms, Anthropology and Evolution, University of Parma, Parma, Italy.

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May 2010

DescFold: a web server for protein fold recognition.

BMC Bioinformatics 2009 Dec 14;10:416. Epub 2009 Dec 14.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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December 2009

TIM-Finder: a new method for identifying TIM-barrel proteins.

BMC Struct Biol 2009 Dec 14;9:73. Epub 2009 Dec 14.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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December 2009

Ornithorhynchus anatinus (platypus) links the evolution of immunoglobulin genes in eutherian mammals and nonmammalian tetrapods.

J Immunol 2009 Sep 12;183(5):3285-93. Epub 2009 Aug 12.

State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, People's Republic of China.

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September 2009

Evaluation of protein phosphorylation site predictors.

Protein Pept Lett 2010 Jan;17(1):64-9

Key Laboratory of Ministry of Education for Genetic, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

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January 2010

Binding specificity of locust odorant binding protein and its key binding site for initial recognition of alcohols.

Insect Biochem Mol Biol 2009 Jul 17;39(7):440-7. Epub 2009 Apr 17.

Key Lab for Biological Control of the Ministry of Agriculture, China Agricultural University, Beijing 100193, China.

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July 2009

The prediction of protein-protein interaction networks in rice blast fungus.

BMC Genomics 2008 Nov 2;9:519. Epub 2008 Nov 2.

State Key Laboratory for ArgoBiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, PR China.

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November 2008

Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance.

Plant Cell 2008 Jul 3;20(7):1850-61. Epub 2008 Jul 3.

National Maize Improvement Center of China, China Agricultural University, Beijing 100193, People's Republic of China.

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July 2008

An improved prediction of catalytic residues in enzyme structures.

Protein Eng Des Sel 2008 May 20;21(5):295-302. Epub 2008 Feb 20.

Bioinformatics Center, College of Biological Sciences, China Agricultural University, Beijing 100094, China.

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May 2008

Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs.

BMC Bioinformatics 2008 Feb 18;9:101. Epub 2008 Feb 18.

Bioinformatics Center, College of Biological Sciences, China Agricultural University, 100094 Beijing, China.

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February 2008

GANNPhos: a new phosphorylation site predictor based on a genetic algorithm integrated neural network.

Protein Eng Des Sel 2007 Aug 24;20(8):405-12. Epub 2007 Jul 24.

Bioinformatics Center, College of Biological Sciences, China Agricultural University, Beijing 100094, China.

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August 2007

Exploiting Bifidobacterium genomes: the molecular basis of stress response.

Int J Food Microbiol 2007 Nov 14;120(1-2):13-24. Epub 2007 Jun 14.

Department of Genetics, Anthropology and Evolution, University of Parma, parco Area delle Scienze 11a, 43100 Parma, Italy.

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November 2007

Molecular characterization of hsp20, encoding a small heat shock protein of bifidobacterium breve UCC2003.

Appl Environ Microbiol 2007 Jul 18;73(14):4695-703. Epub 2007 May 18.

Department of Genetics, Anthropology and Evolution, University of Parma, Parma, Italy.

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July 2007

The AtMAP65-1 cross-bridge between microtubules is formed by one dimer.

Plant Cell Physiol 2007 Jun 15;48(6):866-74. Epub 2007 May 15.

State Key Laboratory of Plant Physiology and Biochemistry, China Agricultural University, Beijing 100094, PR China.

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June 2007

N-[2-(5,5-dimethyl-1,3-dioxane-2-yl)ethyl]amino acids: their synthesis, anti-inflammatory evaluation and QSAR analysis.

Eur J Med Chem 2008 Jan 4;43(1):8-18. Epub 2007 Apr 4.

College of Pharmaceutical Sciences, Peking University, Beijing 100083, PR China.

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January 2008

Genome-wide analysis of enzyme structure-function combination across three domains of life.

Protein Pept Lett 2007 ;14(3):291-7

Bioinformatics Center, College of Biological Sciences, China Agricultural University, Beijing 100094, China.

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June 2007

Novel 1-oxyl-2-substitutedphenyl-4,4,5,5-tetramethylimidazolines: synthesis, selectively analgesic action, and QSAR analysis.

Bioorg Med Chem 2007 Apr 15;15(8):2815-26. Epub 2007 Feb 15.

College of Pharmaceutical Sciences, Capital Medical University, Beijing 100054, PR China.

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April 2007

Studies on logP, retention time and QSAR of 2-substituted phenylnitronyl nitroxides as free radical scavengers.

Eur J Med Chem 2007 Jul 13;42(7):955-65. Epub 2007 Jan 13.

College of Pharmaceutical Sciences, Capital Medical University, Beijing 100069, PR China.

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July 2007

Computational studies of ligand-receptor interactions in bitter taste receptors.

J Recept Signal Transduct Res 2006 ;26(5-6):611-30

CERMAV BP53, F-38041 Grenoble Cedex 9, France.

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March 2007

How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators.

FEMS Microbiol Rev 2006 Sep;30(5):734-59

Alimentary Pharmabiotic Centre and Department of Microbiology, Bioscience Institute, National University of Ireland, Cork, Ireland.

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September 2006

Comparison of a homology model and the crystallographic structure of human 11beta-hydroxysteroid dehydrogenase type 1 (11betaHSD1) in a structure-based identification of inhibitors.

J Comput Aided Mol Des 2006 Feb 20;20(2):67-81. Epub 2006 Apr 20.

BioAnalytical Science, Nestlé Research Center, Nestec Ltd, CH-1000, Lausanne 26, Switzerland.

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February 2006

Similarity networks of protein binding sites.

Proteins 2006 Feb;62(2):470-8

Nestlé Research Center, Nestec Ltd, BioAnalytical Science, CH-1000 Lausanne 26, Switzerland.

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February 2006

The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction.

Microbiology (Reading) 2005 Sep;151(Pt 9):2861-2872

Alimentary Pharmabiotic Centre and Department of Microbiology, Bioscience Institute, National University of Ireland, Western Road, Cork, Ireland.

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September 2005

Descriptor-based protein remote homology identification.

Protein Sci 2005 Feb 4;14(2):431-44. Epub 2005 Jan 4.

Nestlé Research Center, BioAnalyti-cal Science, CH-1000 Lausanne 26, Switzerland. Ziding.

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February 2005

Exploring the sequence-structure protein landscape in the glycosyltransferase family.

Protein Sci 2003 Oct;12(10):2291-302

Nestlé Research Center, CH-1000 Lausanne 26, Switzerland.

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October 2003