Zhi-Liang Hu

Zhi-Liang Hu

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Zhi-Liang Hu

Zhi-Liang Hu

Publications by authors named "Zhi-Liang Hu"

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Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB.

Nucleic Acids Res 2019 Jan;47(D1):D701-D710

Department of Animal Science, Iowa State University, 2255 Kildee Hall, Ames, IA 50011, USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323967PMC
January 2019

Large-scale gene co-expression network as a source of functional annotation for cattle genes.

BMC Genomics 2016 11 2;17(1):846. Epub 2016 Nov 2.

Department of Animal Science, Iowa State University, Ames, IA, 50011, USA.

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http://dx.doi.org/10.1186/s12864-016-3176-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094014PMC
November 2016

Developmental progress and current status of the Animal QTLdb.

Nucleic Acids Res 2016 Jan 23;44(D1):D827-33. Epub 2015 Nov 23.

Department of Animal Science, Iowa State University, 2255 Kildee Hall, Ames, IA 50011, USA

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http://dx.doi.org/10.1093/nar/gkv1233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702873PMC
January 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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http://dx.doi.org/10.1093/nar/gkv350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294PMC
July 2015

Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D871-9. Epub 2012 Nov 24.

Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, 2255 Kildee Hall, Ames, IA 50011, USA.

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http://dx.doi.org/10.1093/nar/gks1150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531174PMC
January 2013

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://www.nature.com/doifinder/10.1038/nature11622
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012

Use of Genome Sequence Information for Meat Quality Trait QTL Mining for Causal Genes and Mutations on Pig Chromosome 17.

Front Genet 2011 14;2:43. Epub 2011 Jul 14.

Center for Integrated Animal Genomics, Department of Animal Science, Iowa State University Ames, IA, USA.

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http://dx.doi.org/10.3389/fgene.2011.00043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268380PMC
October 2012

Design database for quantitative trait loci (QTL) data warehouse, data mining, and meta-analysis.

Methods Mol Biol 2012 ;871:121-44

Department of Animal Science, Center for Integrated Animal Genomics Iowa State University, 2255 Kildee Hall, Ames, IA 50011-3150, USA.

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http://dx.doi.org/10.1007/978-1-61779-785-9_7DOI Listing
August 2012

Meta-analysis of QTL mapping experiments.

Methods Mol Biol 2012 ;871:145-71

Department of Animal Sciences, UW-Madison, Madison, WI, USA.

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http://dx.doi.org/10.1007/978-1-61779-785-9_8DOI Listing
August 2012

[Effect of microRNA on proliferation caused by mutant HBx in human hepatocytes].

Zhonghua Gan Zang Bing Za Zhi 2012 Aug;20(8):598-604

Department of Infectious Desease, Central South University, Changsha, China.

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http://dx.doi.org/10.3760/cma.j.issn.1007-3418.2012.08.012DOI Listing
August 2012

[Expression profile of miRNA in PBMCs of chronic severe hepatitis B patients].

Zhonghua Gan Zang Bing Za Zhi 2011 Jul;19(7):556-8

Department of Infectious Diseases, Xiangya Hospital, Central South University, Changsha, China.

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http://dx.doi.org/10.3760/cma.j.issn.1007-3418.2011.07.021DOI Listing
July 2011

Mining ESTs to determine the usefulness of SNPs across shrimp species.

Anim Biotechnol 2010 Apr;21(2):100-3

Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, Iowa, USA.

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http://dx.doi.org/10.1080/10495390903323968DOI Listing
April 2010

ANEXdb: an integrated animal ANnotation and microarray EXpression database.

Mamm Genome 2009 Nov-Dec;20(11-12):768-77. Epub 2009 Nov 20.

Interdepartmental Genetics, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1007/s00335-009-9234-1DOI Listing
March 2010

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence.

BMC Res Notes 2009 Jan 22;2:11. Epub 2009 Jan 22.

Department of Animal Science, Iowa State University, Ames, Iowa 50011-3150, USA.

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http://dx.doi.org/10.1186/1756-0500-2-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642851PMC
January 2009

MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans.

BMC Bioinformatics 2007 Sep 17;8:341. Epub 2007 Sep 17.

Key Lab of Agricultural Animal Genetics, Breeding, and Reproduction of Ministry of Education & Key Laboratory of Swine Genetics and Breeding of Ministry of Agriculture, Huazhong Agricultural University, Wuhan, P R China.

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http://dx.doi.org/10.1186/1471-2105-8-341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206061PMC
September 2007

Advances in QTL mapping in pigs.

Int J Biol Sci 2007 Feb 10;3(3):192-7. Epub 2007 Feb 10.

Department of Animal Science and the Center for Integrated Animal Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1802014PMC
http://dx.doi.org/10.7150/ijbs.3.192DOI Listing
February 2007

AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond.

Nucleic Acids Res 2007 Jan 29;35(Database issue):D604-9. Epub 2006 Nov 29.

Department of Animal Science, Center for Integrated Animal Genomics Iowa State University, 2255 Kildee Hall, Ames, IA 50011-3150, USA.

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http://dx.doi.org/10.1093/nar/gkl946DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781224PMC
January 2007

Animal QTLdb: beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information.

Mamm Genome 2007 Jan 23;18(1):1-4. Epub 2007 Jan 23.

Department of Animal Science, Center for Integrated Animal Genomics, Iowa State University, Ames, IA 50011-3150, USA.

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http://link.springer.com/10.1007/s00335-006-0105-8
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http://dx.doi.org/10.1007/s00335-006-0105-8DOI Listing
January 2007

A QTL resource and comparison tool for pigs: PigQTLDB.

Mamm Genome 2005 Oct 29;16(10):792-800. Epub 2005 Oct 29.

Department of Animal Science, Center for Integrated Animal Genomics, Iowa State University, 2255 Kildee Hall, Ames, Iowa 50011, USA.

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http://link.springer.com/10.1007/s00335-005-0060-9
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http://dx.doi.org/10.1007/s00335-005-0060-9DOI Listing
October 2005