Publications by authors named "Zhi John Lu"

50Publications

Integrative analysis of long extracellular RNAs reveals a detection panel of noncoding RNAs for liver cancer.

Theranostics 2021 1;11(1):181-193. Epub 2021 Jan 1.

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.

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January 2021

Arabidopsis exoribonuclease USB1 interacts with the PPR-domain protein SOAR1 to negatively regulate abscisic acid signaling.

J Exp Bot 2020 Oct;71(19):5837-5851

MOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.

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October 2020

Selective translation by alternative bacterial ribosomes.

Proc Natl Acad Sci U S A 2020 08 28;117(32):19487-19496. Epub 2020 Jul 28.

Centre for Global Health and Infectious Diseases, Collaborative Innovation Centre for the Diagnosis and Treatment of Infectious Diseases, Tsinghua University School of Medicine, 100084 Beijing, China;

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August 2020

A comprehensive evaluation of connectivity methods for L1000 data.

Brief Bioinform 2020 Dec;21(6):2194-2205

School of Medicine, Tsinghua University, Beijing 100084, China.

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December 2020

Noncoding RNAs Serve as Diagnosis and Prognosis Biomarkers for Hepatocellular Carcinoma.

Clin Chem 2019 07 17;65(7):905-915. Epub 2019 Apr 17.

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing, China;

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July 2019

POSTAR2: deciphering the post-transcriptional regulatory logics.

Nucleic Acids Res 2019 01;47(D1):D203-D211

Division of General Surgery, Peking University First Hospital, Beijing 100034, China.

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January 2019

Decoding Plant RNA Structurome.

Mol Plant 2018 04 24;11(4):521-522. Epub 2018 Mar 24.

MOE Key Laboratory of Bioinformatics, Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China. Electronic address:

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April 2018

Stress-responsive regulation of long non-coding RNA polyadenylation in Oryza sativa.

Plant J 2018 03 16;93(5):814-827. Epub 2018 Jan 16.

MOE Key Laboratory of Bioinformatics, Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.

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March 2018

RISE: a database of RNA interactome from sequencing experiments.

Nucleic Acids Res 2018 01;46(D1):D194-D201

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.

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January 2018

Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA-protein binding sites.

Genome Biol 2017 09 8;18(1):169. Epub 2017 Sep 8.

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.

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September 2017

Methylation of TMEM176A is an independent prognostic marker and is involved in human colorectal cancer development.

Epigenetics 2017 07 5;12(7):575-583. Epub 2017 Jul 5.

a Department of Gastroenterology & Hepatology , Chinese PLA General Hospital , Beijing , China.

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July 2017

Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa.

Sci Rep 2017 02 24;7:43166. Epub 2017 Feb 24.

State Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China.

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February 2017

RNA Biomarkers: Frontier of Precision Medicine for Cancer.

Noncoding RNA 2017 Feb 20;3(1). Epub 2017 Feb 20.

MOE Key Laboratory of Bioinformatics, Tsinghua-Peking Joint Center for Life Sciences, Center for Plant Biology and Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.

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February 2017

Recurrently deregulated lncRNAs in hepatocellular carcinoma.

Nat Commun 2017 02 13;8:14421. Epub 2017 Feb 13.

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, Center for Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.

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February 2017

CCG: an integrative resource of cancer protein-coding genes and long noncoding RNAs.

Discov Med 2016 12;22(123):351-359

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, Center for Plant Biology and Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.

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December 2016

POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins.

Nucleic Acids Res 2017 01 5;45(D1):D104-D114. Epub 2016 Oct 5.

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, Center for Plant Biology and Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China

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January 2017

Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states.

Nucleic Acids Res 2017 02;45(4):1657-1672

Department of Statistics, University of California, Los Angeles, CA 90095-1554, USA.

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February 2017