Yuki Morono

Yuki Morono

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Yuki Morono

Yuki Morono

Publications by authors named "Yuki Morono"

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Isolation of an archaeon at the prokaryote-eukaryote interface.

Nature 2020 01 15;577(7791):519-525. Epub 2020 Jan 15.

Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.

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http://dx.doi.org/10.1038/s41586-019-1916-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7015854PMC
January 2020

An Improved Method for Extracting Viruses From Sediment: Detection of Far More Viruses in the Subseafloor Than Previously Reported.

Front Microbiol 2019 29;10:878. Epub 2019 Apr 29.

Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology, Yokosuka, Japan.

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https://www.frontiersin.org/article/10.3389/fmicb.2019.00878
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http://dx.doi.org/10.3389/fmicb.2019.00878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6501758PMC
April 2019

Microbial dormancy in the marine subsurface: Global endospore abundance and response to burial.

Sci Adv 2019 02 20;5(2):eaav1024. Epub 2019 Feb 20.

MARUM-Center for Marine Environmental Sciences and Department of Geosciences, University of Bremen, 28359 Bremen, Germany.

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http://dx.doi.org/10.1126/sciadv.aav1024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6382399PMC
February 2019

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.

Microbes Environ 2018 Jul 25;33(2):186-194. Epub 2018 May 25.

Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

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http://dx.doi.org/10.1264/jsme2.ME17194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031389PMC
July 2018

Assessment of Capacity to Capture DNA Aerosols by Clean Filters for Molecular Biology Experiments.

Microbes Environ 2018 Jul 16;33(2):222-226. Epub 2018 Jun 16.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

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http://dx.doi.org/10.1264/jsme2.ME18012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031387PMC
July 2018

Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment.

Front Microbiol 2017 19;8:2569. Epub 2017 Dec 19.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology, Nankoku, Japan.

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http://dx.doi.org/10.3389/fmicb.2017.02569DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5742206PMC
December 2017

Archaeal MutS5 tightly binds to Holliday junction similarly to eukaryotic MutSγ.

FEBS J 2017 10 4;284(20):3470-3483. Epub 2017 Sep 4.

Agricultural Science, Graduate School of Integrated Arts and Sciences, Kochi University, Nankoku, Japan.

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http://doi.wiley.com/10.1111/febs.14204
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http://dx.doi.org/10.1111/febs.14204DOI Listing
October 2017

Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds.

Proc Natl Acad Sci U S A 2017 10 3;114(44):E9206-E9215. Epub 2017 Oct 3.

Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125;

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http://dx.doi.org/10.1073/pnas.1707525114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5676895PMC
October 2017

from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes.

Front Microbiol 2017 20;8:1135. Epub 2017 Jun 20.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science TechnologyNankoku, Japan.

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http://dx.doi.org/10.3389/fmicb.2017.01135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5476839PMC
June 2017

Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment.

Sci Rep 2017 05 25;7(1):2400. Epub 2017 May 25.

Center for Geomicrobiology, Department of Bioscience, Aarhus University, 8000, Aarhus, Denmark.

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http://dx.doi.org/10.1038/s41598-017-02295-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5445093PMC
May 2017

Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the Ocean Floor.

Front Microbiol 2017 6;8:137. Epub 2017 Feb 6.

Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and TechnologyKochi, Japan; Research and Development Center for Ocean Drilling Science, Japan Agency for Marine-Earth Science and TechnologyYokohama, Japan; Research and Development Center for Submarine Resources, Japan Agency for Marine-Earth Science and TechnologyYokosuka, Japan.

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http://dx.doi.org/10.3389/fmicb.2017.00137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5292414PMC
February 2017

Size and Carbon Content of Sub-seafloor Microbial Cells at Landsort Deep, Baltic Sea.

Front Microbiol 2016 31;7:1375. Epub 2016 Aug 31.

Center for Geomicrobiology, Department of Bioscience, Aarhus UniversityAarhus, Denmark; Section for Microbiology, Department of Bioscience, Aarhus UniversityAarhus, Denmark.

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http://dx.doi.org/10.3389/fmicb.2016.01375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5005352PMC
September 2016

A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments.

Front Microbiol 2016 23;7:986. Epub 2016 Jun 23.

State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong UniversityShanghai, China; State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong UniversityShanghai, China.

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http://dx.doi.org/10.3389/fmicb.2016.00986DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4917542PMC
July 2016

Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan.

Environ Microbiol 2016 06 10;18(6):1889-906. Epub 2015 Dec 10.

Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.

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http://dx.doi.org/10.1111/1462-2920.13096DOI Listing
June 2016

Ecophysiology of Zetaproteobacteria Associated with Shallow Hydrothermal Iron-Oxyhydroxide Deposits in Nagahama Bay of Satsuma Iwo-Jima, Japan.

Front Microbiol 2015 11;6:1554. Epub 2016 Jan 11.

Japan Agency for Marine-Earth Science Technology, Kochi Institute for Core Sample ResearchNankoku, Japan; Japan Agency for Marine-Earth Science Technology, Research and Development Center for Submarine ResourcesNankoku, Japan.

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http://dx.doi.org/10.3389/fmicb.2015.01554DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707226PMC
January 2016

Intact preservation of environmental samples by freezing under an alternating magnetic field.

Environ Microbiol Rep 2015 Apr 23;7(2):243-51. Epub 2015 Jan 23.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Monobe B200, Nankoku, Kochi, 783-8502, Japan; Geobiotechnology Group, Research and Development Center for Submarine Resources, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Monobe B200, Nankoku, Kochi, 783-8502, Japan.

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http://dx.doi.org/10.1111/1758-2229.12238DOI Listing
April 2015

Gold-ISH: a nano-size gold particle-based phylogenetic identification compatible with NanoSIMS.

Syst Appl Microbiol 2014 Jun 1;37(4):261-6. Epub 2014 Apr 1.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), Monobe B200, Nankoku, Kochi 783-8502, Japan; Geobio-Engineering and Technology Group, Submarine Resources Research Project, JAMSTEC, Natsushima-cho 2-15, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1016/j.syapm.2014.02.003DOI Listing
June 2014

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins.

FEMS Microbiol Ecol 2014 Apr 23;88(1):60-8. Epub 2013 Dec 23.

Subsurface Geobiology and Advanced Research (SUGAR) Project, Japan Agency for Marine-Earth Science and Technology, Yokosuka, Japan; Department of Earth and Planetary Science, Graduate School of Science, The University of Tokyo, Tokyo, Japan.

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https://academic.oup.com/femsec/article-lookup/doi/10.1111/1
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http://dx.doi.org/10.1111/1574-6941.12269DOI Listing
April 2014

Hot-alkaline DNA extraction method for deep-subseafloor archaeal communities.

Appl Environ Microbiol 2014 Mar 17;80(6):1985-94. Epub 2014 Jan 17.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Monobe, Nankoku, Kochi, Japan.

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http://aem.asm.org/content/80/6/1985.full.pdf
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http://aem.asm.org/cgi/doi/10.1128/AEM.04150-13
Publisher Site
http://dx.doi.org/10.1128/AEM.04150-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3957647PMC
March 2014

Biological CO2 conversion to acetate in subsurface coal-sand formation using a high-pressure reactor system.

Front Microbiol 2013 2;4:361. Epub 2013 Dec 2.

Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) Kochi, Japan ; Submarine Resources Research Project, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) Kochi, Japan.

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http://dx.doi.org/10.3389/fmicb.2013.00361DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845345PMC
December 2013

An improved cell separation technique for marine subsurface sediments: applications for high-throughput analysis using flow cytometry and cell sorting.

Environ Microbiol 2013 Oct 3;15(10):2841-9. Epub 2013 Jun 3.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Monobe B200, Nankoku, Kochi, 783-8502, Japan.

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http://dx.doi.org/10.1111/1462-2920.12153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910163PMC
October 2013

Radical gas-based DNA decontamination for ultra-sensitive molecular experiments.

Microbes Environ 2012 18;27(4):512-4. Epub 2012 Apr 18.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology, Monobe B200, Nankoku, Kochi 783–8502, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103563PMC
http://dx.doi.org/10.1264/jsme2.me12061DOI Listing
June 2013

Cell-specific thioautotrophic productivity of epsilon-proteobacterial epibionts associated with Shinkaia crosnieri.

PLoS One 2012 2;7(10):e46282. Epub 2012 Oct 2.

Subsurface Geobiology Advanced Research Team (SUGAR), Extremobiosphere Research Program (XBR), Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046282PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3462759PMC
June 2013

Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone.

Philos Trans R Soc Lond B Biol Sci 2013 Apr 11;368(1616):20120249. Epub 2013 Mar 11.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Monobe B200, Nankoku, Kochi 783-8502, Japan.

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http://dx.doi.org/10.1098/rstb.2012.0249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638456PMC
April 2013

Bacterial dominance in subseafloor sediments characterized by methane hydrates.

FEMS Microbiol Ecol 2012 Jul 16;81(1):88-98. Epub 2012 Feb 16.

Oregon State University, Corvallis, OR, USA.

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http://dx.doi.org/10.1111/j.1574-6941.2012.01311.xDOI Listing
July 2012

A new DNA extraction method by controlled alkaline treatments from consolidated subsurface sediments.

FEMS Microbiol Lett 2012 Jan 23;326(1):47-54. Epub 2011 Nov 23.

Institute of Geology and Geoinformation, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.

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http://dx.doi.org/10.1111/j.1574-6968.2011.02437.xDOI Listing
January 2012

Cultivation of methanogenic community from subseafloor sediments using a continuous-flow bioreactor.

ISME J 2011 Dec 9;5(12):1913-25. Epub 2011 Jun 9.

Subsurface Geobiology Advanced Research (SUGAR) Project, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), Yokosuka, Kanagawa, Japan.

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http://dx.doi.org/10.1038/ismej.2011.64DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3223304PMC
December 2011

Carbon and nitrogen assimilation in deep subseafloor microbial cells.

Proc Natl Acad Sci U S A 2011 Nov 10;108(45):18295-300. Epub 2011 Oct 10.

Kochi Institute for Core Sample Research, Japan Agency for Earth-Marine Science and Technology (JAMSTEC), Nankoku, Kochi 783-8502, Japan.

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http://dx.doi.org/10.1073/pnas.1107763108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3215001PMC
November 2011

Comparative study of subseafloor microbial community structures in deeply buried coral fossils and sediment matrices from the challenger mound in the porcupine seabight.

Front Microbiol 2011 17;2:231. Epub 2011 Nov 17.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology Nankoku, Kochi, Japan.

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http://dx.doi.org/10.3389/fmicb.2011.00231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218302PMC
November 2011

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

Appl Environ Microbiol 2009 Nov 11;75(21):6905-9. Epub 2009 Sep 11.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology, Monobe B200, Nankoku, Kochi 783-8502, Japan.

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http://dx.doi.org/10.1128/AEM.01124-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2772448PMC
November 2009

Discriminative detection and enumeration of microbial life in marine subsurface sediments.

ISME J 2009 May 12;3(5):503-11. Epub 2009 Feb 12.

Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Nankoku, Kochi, Japan.

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http://dx.doi.org/10.1038/ismej.2009.1DOI Listing
May 2009

Significant contribution of Archaea to extant biomass in marine subsurface sediments.

Nature 2008 Aug 20;454(7207):991-4. Epub 2008 Jul 20.

Organic Geochemistry Group, Department of Geosciences and MARUM Center for Marine Environmental Sciences, University of Bremen, PO Box 330 440, 28334 Bremen, Germany.

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http://www.nature.com/articles/nature07174
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http://dx.doi.org/10.1038/nature07174DOI Listing
August 2008

"Mark the gene": a method for nondestructive introduction of marker sequences inside the gene frame of transgenes.

Appl Environ Microbiol 2007 Aug 25;73(15):4915-21. Epub 2007 May 25.

Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology, Ibaraki, Japan.

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http://dx.doi.org/10.1128/AEM.00068-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1951010PMC
August 2007

Addition of aromatic substrates restores trichloroethylene degradation activity in Pseudomonas putida F1.

Appl Environ Microbiol 2004 May;70(5):2830-5

Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama 226-8501, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC404424PMC
http://dx.doi.org/10.1128/aem.70.5.2830-2835.2004DOI Listing
May 2004

Application of glutaraldehyde for the staining of esterase-active cells with carboxyfluorescein diacetate.

Biotechnol Lett 2004 Mar;26(5):379-83

Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.

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http://dx.doi.org/10.1023/b:bile.0000018255.89810.1aDOI Listing
March 2004