Yuji O Kamatari

Yuji O Kamatari

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Yuji O Kamatari

Yuji O Kamatari

Publications by authors named "Yuji O Kamatari"

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38Publications

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Short disordered protein segment regulates cross-species transmission of a yeast prion.

Nat Chem Biol 2020 Jul 13;16(7):756-765. Epub 2020 Apr 13.

Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, Japan.

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http://dx.doi.org/10.1038/s41589-020-0516-yDOI Listing
July 2020

Canine SOD1 harboring E40K or T18S mutations promotes protein aggregation without reducing the global structural stability.

PeerJ 2020 15;8:e9512. Epub 2020 Jul 15.

The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu, Japan.

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http://dx.doi.org/10.7717/peerj.9512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7368427PMC
July 2020

mRNA Profile in Milk Extracellular Vesicles from Bovine Leukemia Virus-Infected Cattle.

Viruses 2020 Jun 20;12(6). Epub 2020 Jun 20.

Laboratory of Food and Environmental Hygiene, Cooperative Department of Veterinary Medicine, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.

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http://dx.doi.org/10.3390/v12060669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7354454PMC
June 2020

Naïve balance between structural stability and DNA-binding ability of c-Myb R2R3 under physiological ionic conditions.

Biophys Chem 2020 03 2;258:106319. Epub 2020 Jan 2.

Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Shimogamo Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bpc.2019.106319DOI Listing
March 2020

A Quinolinone Compound Inhibiting the Oligomerization of Nucleoprotein of Influenza A Virus Prevents the Selection of Escape Mutants.

Viruses 2020 03 19;12(3). Epub 2020 Mar 19.

Department of Molecular Microbiology and Immunology, Graduate School of Biomedical Sciences, Nagasaki University, 1-12-4 Sakamoto, Nagasaki 852-8523, Japan.

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http://dx.doi.org/10.3390/v12030337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7150793PMC
March 2020

Structural and functional evaluation of single-chain Fv antibody HyC1 recognizing the residual native structure of hen egg lysozyme.

Biosci Biotechnol Biochem 2020 Feb 29;84(2):358-364. Epub 2019 Oct 29.

Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.

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http://dx.doi.org/10.1080/09168451.2019.1683441DOI Listing
February 2020

Identification of Alprenolol Hydrochloride as an Anti-prion Compound Using Surface Plasmon Resonance Imaging.

Mol Neurobiol 2019 Jan 27;56(1):367-377. Epub 2018 Apr 27.

Division of Microbiology, Department of Infectious Diseases, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.

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http://dx.doi.org/10.1007/s12035-018-1088-7DOI Listing
January 2019

Molecular basis for diversification of yeast prion strain conformation.

Proc Natl Acad Sci U S A 2018 03 21;115(10):2389-2394. Epub 2018 Feb 21.

Laboratory for Protein Conformation Diseases, RIKEN Brain Science Institute, Wako, 351-0198 Saitama, Japan;

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http://dx.doi.org/10.1073/pnas.1715483115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5877990PMC
March 2018

Instability of C154Y variant of aldo-keto reductase 1C3.

Chem Biol Interact 2017 Oct 23;276:194-202. Epub 2016 Dec 23.

Laboratory of Biochemistry, Gifu Pharmaceutical University, Gifu 501-1196, Japan.

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https://linkinghub.elsevier.com/retrieve/pii/S00092797163075
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http://dx.doi.org/10.1016/j.cbi.2016.12.018DOI Listing
October 2017

Light-chain residue 95 is critical for antigen binding and multispecificity of monoclonal antibody G2.

Biochem Biophys Res Commun 2017 09 30;490(4):1205-1209. Epub 2017 Jun 30.

Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto, Kyoto 606-8522, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2017.06.183DOI Listing
September 2017

Evaluation of compound selectivity of aldo-keto reductases using differential scanning fluorimetry.

J Biochem 2017 Feb;161(2):215-222

Life Science Research Center, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.

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https://academic.oup.com/jb/article-lookup/doi/10.1093/jb/mv
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http://dx.doi.org/10.1093/jb/mvw063DOI Listing
February 2017

Effects of ligand binding on the stability of aldo-keto reductases: Implications for stabilizer or destabilizer chaperones.

Protein Sci 2016 12 19;25(12):2132-2141. Epub 2016 Sep 19.

United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu, 501-1193, Japan.

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http://dx.doi.org/10.1002/pro.3036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5119574PMC
December 2016

Synthesis of double-fluorescent labeled prion protein for FRET analysis.

Biosci Biotechnol Biochem 2015 2;79(11):1802-9. Epub 2015 Jun 2.

a Center for Emerging Infectious Diseases , Gifu University.

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http://dx.doi.org/10.1080/09168451.2015.1050991DOI Listing
July 2016

Cavities and Excited States in Proteins.

Subcell Biochem 2015 ;72:237-57

National Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai, 200031, China.

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http://dx.doi.org/10.1007/978-94-017-9918-8_12DOI Listing
October 2015

The structure and conformational switching of Rap1B.

Biochem Biophys Res Commun 2015 Jun 29;462(1):46-51. Epub 2015 Apr 29.

Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro, Yokohama, Kanagawa 230-0045, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2015.04.103DOI Listing
June 2015

Identification and characterization of a multispecific monoclonal antibody G2 against chicken prion protein.

Protein Sci 2014 Aug 14;23(8):1050-9. Epub 2014 Jun 14.

Life Science Research Center, Gifu University, 1-1 Yanagido, Gifu, 501-1194, Japan.

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http://dx.doi.org/10.1002/pro.2491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4116654PMC
August 2014

Nearly reversible conformational change of amyloid fibrils as revealed by pH-jump experiments.

Biochemistry 2013 Oct 18;52(39):6797-806. Epub 2013 Sep 18.

United Graduate School of Drug Discovery and Medical Information Sciences, ‡Center for Emerging Infectious Diseases, §Life Science Research Center, and ¶Supporting and Development Center for Technology Education, Faculty of Engineering, Gifu University , Yanagido 1-1, Gifu 501-1193, Japan.

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http://dx.doi.org/10.1021/bi400698uDOI Listing
October 2013

FK506 reduces abnormal prion protein through the activation of autolysosomal degradation and prolongs survival in prion-infected mice.

Autophagy 2013 Sep 19;9(9):1386-94. Epub 2013 Jun 19.

Department of Molecular Microbiology and Immunology; Nagasaki University Graduate School of Biomedical Sciences; Sakamoto, Nagasaki Japan.

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http://dx.doi.org/10.4161/auto.25381DOI Listing
September 2013

Exploring the folding energy landscape with pressure.

Arch Biochem Biophys 2013 Mar 12;531(1-2):110-5. Epub 2012 Dec 12.

High Pressure Protein Research Center, Institute of Advanced Technology, Kinki University, 930 Nishimitani, Kinokawa 649-6493, Japan.

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http://dx.doi.org/10.1016/j.abb.2012.11.016DOI Listing
March 2013

A theoretical study of the two binding modes between lysozyme and tri-NAG with an explicit solvent model based on the fragment molecular orbital method.

Phys Chem Chem Phys 2013 Mar 6;15(10):3646-54. Epub 2013 Feb 6.

CREST Project, Japan Science and Technology Agency, Kawaguchi, Saitama, Japan.

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http://dx.doi.org/10.1039/c3cp42761gDOI Listing
March 2013

Isolation of a new xanthylium-related pigment from adzuki beans Vigna angularis.

Biosci Biotechnol Biochem 2012 7;76(8):1571-2. Epub 2012 Aug 7.

Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.

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http://dx.doi.org/10.1271/bbb.120240DOI Listing
February 2013

Anti-prion activity of an RNA aptamer and its structural basis.

Nucleic Acids Res 2013 Jan 24;41(2):1355-62. Epub 2012 Nov 24.

Institute of Advanced Energy, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1093/nar/gks1132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3553944PMC
January 2013

Molecular analysis of the binding mode of Toll/interleukin-1 receptor (TIR) domain proteins during TLR2 signaling.

Mol Immunol 2012 Oct 4;52(3-4):108-16. Epub 2012 Jun 4.

Department of Pediatrics, Graduate School of Medicine, Gifu University, Yanagido 1-1, Gifu 501-1194, Japan.

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http://dx.doi.org/10.1016/j.molimm.2012.05.003DOI Listing
October 2012

Structure-based discovery of anti-influenza virus A compounds among medicines.

Biochim Biophys Acta 2012 Feb 11;1820(2):90-5. Epub 2011 Nov 11.

United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, 1-1Yanagido, Gifu 501-1193, Japan.

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http://dx.doi.org/10.1016/j.bbagen.2011.11.003DOI Listing
February 2012

Cavity hydration as a gateway to unfolding: an NMR study of hen lysozyme at high pressure and low temperature.

Biophys Chem 2011 Jun 3;156(1):24-30. Epub 2011 Feb 3.

Center for Emerging Infectious Diseases, Gifu University, Yanagido, Japan.

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http://dx.doi.org/10.1016/j.bpc.2011.01.009DOI Listing
June 2011

Synthesis of GN8 derivatives and evaluation of their antiprion activity in TSE-infected cells.

Bioorg Med Chem Lett 2011 Mar 6;21(5):1502-7. Epub 2011 Jan 6.

Center for Emerging Infectious Diseases, Gifu University, Gifu, Japan.

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http://dx.doi.org/10.1016/j.bmcl.2010.12.132DOI Listing
March 2011

Pressure-induced changes in the solution structure of the GB1 domain of protein G.

Proteins 2008 May;71(3):1432-40

Department of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield S10 2TN, United Kingdom.

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http://dx.doi.org/10.1002/prot.21832DOI Listing
May 2008

Strange kinetic phase in the extremely early folding process of beta-lactoglobulin.

FEBS Lett 2007 Sep 21;581(23):4463-7. Epub 2007 Aug 21.

Division of Prion Research, Center for Emerging Infectious Diseases, Gifu University, Gifu 501-1194, Japan.

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http://dx.doi.org/10.1016/j.febslet.2007.08.023DOI Listing
September 2007

Hot spots in prion protein for pathogenic conversion.

Proc Natl Acad Sci U S A 2007 Jul 6;104(29):11921-6. Epub 2007 Jul 6.

Center for Emerging Infectious Diseases, Department of Gene and Development, Graduate School of Medicine, Gifu University, 1-1 Yanagido, Gifu 501-1194, Japan.

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http://dx.doi.org/10.1073/pnas.0702671104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1924567PMC
July 2007

Pressure-jump NMR study of dissociation and association of amyloid protofibrils.

J Mol Biol 2005 Jun;349(5):916-21

Structural and Molecular Biology Laboratory, RIKEN Harima Institute/Spring-8, Mikazuki-cho, Sayo-gun, Hyogo 679-5148, Japan.

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http://dx.doi.org/10.1016/j.jmb.2005.04.010DOI Listing
June 2005

High-pressure NMR spectroscopy for characterizing folding intermediates and denatured states of proteins.

Methods 2004 Sep;34(1):133-43

Cellular Signaling Laboratory, RIKEN Harima Institute, 1-1-1 Kouto, Mikazuki-cho, Sayo-gun, Hyogo 679-5148, Japan.

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http://dx.doi.org/10.1016/j.ymeth.2004.03.010DOI Listing
September 2004

Slow conformational dynamics in the hamster prion protein.

Biochemistry 2004 Apr;43(15):4439-46

Department of Biochemistry and Biophysics, School of Medicine, Gifu University, Gifu 500-8705 Japan.

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http://dx.doi.org/10.1021/bi036123oDOI Listing
April 2004

Structural dissection of alkaline-denatured pepsin.

Protein Sci 2003 Apr;12(4):717-24

Oxford Centre for Molecular Sciences, New Chemistry Laboratory, University of Oxford, Oxford OX1 3QT, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323848PMC
http://dx.doi.org/10.1110/ps.0219903DOI Listing
April 2003