Youyi Fong

Youyi Fong

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Youyi Fong

Youyi Fong

Publications by authors named "Youyi Fong"

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54Publications

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Maximum diversity weighting for biomarkers with application in HIV-1 vaccine studies.

Stat Med 2019 09 19;38(20):3936-3946. Epub 2019 Jun 19.

Vaccine and Infectious Disease Division and Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington.

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http://dx.doi.org/10.1002/sim.8212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684395PMC
September 2019

Fc Characteristics Mediate Selective Placental Transfer of IgG in HIV-Infected Women.

Cell 2019 06 13;178(1):190-201.e11. Epub 2019 Jun 13.

Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA; Duke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA; Department of Pediatrics, Duke University Medical Center, Durham, NC 27710, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.05.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727200PMC
June 2019

HAI and NAI titer correlates of inactivated and live attenuated influenza vaccine efficacy.

BMC Infect Dis 2019 May 22;19(1):453. Epub 2019 May 22.

Department of Epidemiology, University of Michigan School of Public Health, 1415 Washington Heights, Ann Arbor, 48109, USA.

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https://bmcinfectdis.biomedcentral.com/articles/10.1186/s128
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http://dx.doi.org/10.1186/s12879-019-4049-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6530189PMC
May 2019

Response to Guo et al.'s Letter to the Editor.

Biostatistics 2019 04;20(2):363-365

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

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http://dx.doi.org/10.1093/biostatistics/kxy061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6657390PMC
April 2019

Fast Bootstrap Confidence Intervals for Continuous Threshold Linear Regression.

Authors:
Youyi Fong

J Comput Graph Stat 2019 13;28(2):466-470. Epub 2019 Feb 13.

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Department of Biostatistics, University of Washington, Seattle, WA 98109.

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http://dx.doi.org/10.1080/10618600.2018.1537927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6713448PMC
February 2019

Rank-based two-sample tests for paired data with missing values.

Biostatistics 2018 07;19(3):281-294

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N., Seattle, WA 98109, USA.

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http://dx.doi.org/10.1093/biostatistics/kxx039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991263PMC
July 2018

Modified Wilcoxon-Mann-Whitney Test and Power against Strong Null.

Am Stat 2019 10;73(1):43-49. Epub 2018 May 10.

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.

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http://dx.doi.org/10.1080/00031305.2017.1328375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6422344PMC
May 2018

Efficacy of a bivalent killed whole-cell cholera vaccine over five years: a re-analysis of a cluster-randomized trial.

BMC Infect Dis 2018 02 20;18(1):84. Epub 2018 Feb 20.

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N., Seattle, 98109, WA, USA.

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http://dx.doi.org/10.1186/s12879-018-2981-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819652PMC
February 2018

chngpt: threshold regression model estimation and inference.

BMC Bioinformatics 2017 Oct 16;18(1):454. Epub 2017 Oct 16.

Human Vaccine Institute, Duke University Medical Center, 2 Genome Court, Durham, USA.

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http://dx.doi.org/10.1186/s12859-017-1863-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5644082PMC
October 2017

Model-robust inference for continuous threshold regression models.

Biometrics 2017 06 17;73(2):452-462. Epub 2016 Nov 17.

Fred Hutchinson Cancer Research Center, Seattle Washington 98109, U.S.A.

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http://dx.doi.org/10.1111/biom.12623DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435560PMC
June 2017

Combining biomarkers linearly and nonlinearly for classification using the area under the ROC curve.

Stat Med 2016 09 5;35(21):3792-809. Epub 2016 Apr 5.

Public Health Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N., M2-B500, Seattle, 98109, WA, U.S.A.

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http://dx.doi.org/10.1002/sim.6956DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965290PMC
September 2016

Nonlinear Calibration Model Choice between the Four and Five-Parameter Logistic Models.

J Biopharm Stat 2015 11;25(5):972-83. Epub 2014 Jun 11.

a Department of Biostatistics , University of Washington , Seattle , Washington , USA.

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http://dx.doi.org/10.1080/10543406.2014.920345DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263697PMC
May 2016

Transformation Model Choice in Nonlinear Regression Analysis of Fluorescence-based Serial Dilution Assays.

Stat Biopharm Res 2016;8(1):1-11. Epub 2016 Mar 22.

Vaccine and Infectious Diseases Division, Public Health Sciences Division, Fred Hutchinson Cancer Research Center, ,

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http://dx.doi.org/10.1080/19466315.2015.1093019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021321PMC
March 2016

Kernel-based logistic regression model for protein sequence without vectorialization.

Biostatistics 2015 Jul 22;16(3):480-92. Epub 2014 Dec 22.

Duke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.

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http://dx.doi.org/10.1093/biostatistics/kxu056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794618PMC
July 2015

The inner foreskin of healthy males at risk of HIV infection harbors epithelial CD4+ CCR5+ cells and has features of an inflamed epidermal barrier.

PLoS One 2014 30;9(9):e108954. Epub 2014 Sep 30.

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America; Department of Medicine, University of Washington, Seattle, Washington, United States of America; Department of Laboratory Medicine, University of Washington, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0108954PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4182607PMC
June 2015

Calibration weighted estimation of semiparametric transformation models for two-phase sampling.

Stat Med 2015 May 4;34(10):1695-707. Epub 2015 Feb 4.

Vaccine and Infectious Disease Division and Public Health Sciences Division, Fred Hutchinson Cancer Research Center.

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http://dx.doi.org/10.1002/sim.6439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390487PMC
May 2015

Change point testing in logistic regression models with interaction term.

Stat Med 2015 Apr 22;34(9):1483-94. Epub 2015 Jan 22.

Vaccine and Infectious Disease Division and Public Health Sciences Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N, Seattle, WA 98006, U.S.A.

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http://dx.doi.org/10.1002/sim.6419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390452PMC
April 2015

Identifying optimal biomarker combinations for treatment selection via a robust kernel method.

Biometrics 2014 Dec 14;70(4):891-901. Epub 2014 Aug 14.

Fred Hutchinson Cancer Research Center, Public Health Sciences, 1100 Fairview Avenue N., Seattle, Washington 98109-1024, U.S.A.; Department of Biostatistics, University of Washington, Seattle, Washington 98195, U.S.A.

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http://dx.doi.org/10.1111/biom.12204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4277554PMC
December 2014

Herpes simplex virus-2 transmission probability estimates based on quantity of viral shedding.

J R Soc Interface 2014 Jun 26;11(95):20140160. Epub 2014 Mar 26.

Department of Medicine, University of Washington, , Seattle, WA, USA.

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http://dx.doi.org/10.1098/rsif.2014.0160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006256PMC
June 2014

nCal: an R package for non-linear calibration.

Bioinformatics 2013 Oct 6;29(20):2653-4. Epub 2013 Aug 6.

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt456DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3789552PMC
October 2013

Borrowing Information across Populations in Estimating Positive and Negative Predictive Values.

J R Stat Soc Ser C Appl Stat 2011 11;60(5):633-653

Fred Hutchinson Cancer Research Center, Vaccine & Infectious Disease / Public Health Sciences, 1100 Fairview Avenue N., Seattle, WA 98109, USA.

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http://dx.doi.org/10.1111/j.1467-9876.2011.00761.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3196635PMC
November 2011

Bayesian inference for generalized linear mixed models.

Biostatistics 2010 Jul 4;11(3):397-412. Epub 2009 Dec 4.

Department of Biostatistics, University of Washington, Seattle, WA 98112, USA.

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http://dx.doi.org/10.1093/biostatistics/kxp053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2883299PMC
July 2010

Bayesian mixture modeling using a hybrid sampler with application to protein subfamily identification.

Biostatistics 2010 Jan 20;11(1):18-33. Epub 2009 Aug 20.

Department of Biostatistics, University of Washington, Seattle, WA 98105, USA.

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http://dx.doi.org/10.1093/biostatistics/kxp033DOI Listing
January 2010

BAYESIAN INFERENCE AND MODEL CHOICE IN A HIDDEN STOCHASTIC TWO-COMPARTMENT MODEL OF HEMATOPOIETIC STEM CELL FATE DECISIONS.

Ann Appl Stat 2009 Dec;3(4):1696-1709

Department of Biostatistics, University of Washington, Seattle, Washington 98005, USA.

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http://dx.doi.org/10.1214/09-AOAS269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3783006PMC
December 2009

Regulation of the different chromatin states of autosomes and X chromosomes in the germ line of C. elegans.

Science 2002 Jun;296(5576):2235-8

Department of Biology, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1126/science.1070790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2435369PMC
June 2002