Yoshiyuki Sakaki

Yoshiyuki Sakaki

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Yoshiyuki Sakaki

Publications by authors named "Yoshiyuki Sakaki"

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A Japanese history of the Human Genome Project.

Authors:
Yoshiyuki Sakaki

Proc Jpn Acad Ser B Phys Biol Sci 2019 ;95(8):441-458

The University of Tokyo.

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http://dx.doi.org/10.2183/pjab.95.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6819149PMC
February 2020

Epithelium specific ETS transcription factor, ESE-3, of Protobothrops flavoviridis snake venom gland transactivates the promoters of venom phospholipase A2 isozyme genes.

Toxicon 2014 Dec 22;92:133-9. Epub 2014 Oct 22.

Department of Pharmaceutical Sciences, Faculty of Pharmaceutical Sciences, Sojo University, 4-22-1 Ikeda, Nishi-ku, Kumamoto 860-0082, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.toxicon.2014.10.001DOI Listing
December 2014

Interleukin-1 receptor gene variants are associated with aggressive periodontitis in the Japanese.

Arch Oral Biol 2014 Jul 20;59(7):756-63. Epub 2014 Apr 20.

Comparative Systems Biology Team, Genomic Sciences Center, RIKEN, Yokohama, Japan; Health Support Center, Toyohashi University of Technology, Toyohashi, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.archoralbio.2014.04.006DOI Listing
July 2014

Physiological and genetic basis for self-aggregation of a thermophilic hydrogenotrophic methanogen, Methanothermobacter strain CaT2.

Environ Microbiol Rep 2014 Jun 12;6(3):268-77. Epub 2013 Dec 12.

Department of Biological Chemistry, Faculty of Agriculture, Yamaguchi University, 1677-1 Yoshida, Yamaguchi, 753-8515, Japan; PRESTO, Japan Science and Technology Agency (JST), Kawaguchi, Saitama, 332-0012, Japan; Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, 305-8566, Japan.

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http://dx.doi.org/10.1111/1758-2229.12128DOI Listing
June 2014

Identification of an imprinted gene cluster in the X-inactivation center.

PLoS One 2013 6;8(8):e71222. Epub 2013 Aug 6.

Japan Science and Technology Agency, Precursory Research for Embryonic Science and Technology, Kawaguchi, Saitama, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071222PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3735490PMC
April 2014

Novel bioresources for studies of Brassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production.

Plant Biotechnol J 2013 Oct 30;11(8):1017-27. Epub 2013 Jul 30.

Central Laboratories for Frontier Technology, Kirin Holdings Company, Ltd., Yokohama, Kanagawa, Japan; RIKEN Plant Science Center, Yokohama, Kanagawa, Japan.

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http://dx.doi.org/10.1111/pbi.12095DOI Listing
October 2013

Establishment and characterization of Roberts syndrome and SC phocomelia model medaka (Oryzias latipes).

Dev Growth Differ 2012 Jun;54(5):588-604

Department of Developmental Medicine, Research Institute, Osaka Medical Center for Maternal and Child Health, Izumi, Osaka, Japan.

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http://dx.doi.org/10.1111/j.1440-169X.2012.01362.xDOI Listing
June 2012

Active role of small non-coding RNAs derived from SINE/B1 retrotransposon during early mouse development.

Mol Biol Rep 2012 Feb 13;39(2):903-9. Epub 2011 May 13.

Department of Molecular Genetics, National Institute of Neuroscience, NCNP, 4-1-1 Ogawahigashi, Kodaira, Tokyo 187-8502, Japan.

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http://link.springer.com/10.1007/s11033-011-0815-1
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http://dx.doi.org/10.1007/s11033-011-0815-1DOI Listing
February 2012

Myostatin-deficient medaka exhibit a double-muscling phenotype with hyperplasia and hypertrophy, which occur sequentially during post-hatch development.

Dev Biol 2011 Nov 7;359(1):82-94. Epub 2011 Sep 7.

Aquatic Animal Health Division, National Research Institute of Aquaculture, Fisheries Research Agency, 224-1 Hiruta, Tamaki, Mie, 519-0423, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2011.08.027DOI Listing
November 2011

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.

Authors:
Marilyn B Renfree Anthony T Papenfuss Janine E Deakin James Lindsay Thomas Heider Katherine Belov Willem Rens Paul D Waters Elizabeth A Pharo Geoff Shaw Emily S W Wong Christophe M Lefèvre Kevin R Nicholas Yoko Kuroki Matthew J Wakefield Kyall R Zenger Chenwei Wang Malcolm Ferguson-Smith Frank W Nicholas Danielle Hickford Hongshi Yu Kirsty R Short Hannah V Siddle Stephen R Frankenberg Keng Yih Chew Brandon R Menzies Jessica M Stringer Shunsuke Suzuki Timothy A Hore Margaret L Delbridge Hardip R Patel Amir Mohammadi Nanette Y Schneider Yanqiu Hu William O'Hara Shafagh Al Nadaf Chen Wu Zhi-Ping Feng Benjamin G Cocks Jianghui Wang Paul Flicek Stephen M J Searle Susan Fairley Kathryn Beal Javier Herrero Dawn M Carone Yutaka Suzuki Sumio Sugano Atsushi Toyoda Yoshiyuki Sakaki Shinji Kondo Yuichiro Nishida Shoji Tatsumoto Ion Mandiou Arthur Hsu Kaighin A McColl Benjamin Lansdell George Weinstock Elizabeth Kuczek Annette McGrath Peter Wilson Artem Men Mehlika Hazar-Rethinam Allison Hall John Davis David Wood Sarah Williams Yogi Sundaravadanam Donna M Muzny Shalini N Jhangiani Lora R Lewis Margaret B Morgan Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Lynne Nazareth Andrew Cree Gerald Fowler Christie L Kovar Huyen H Dinh Vandita Joshi Chyn Jing Fremiet Lara Rebecca Thornton Lei Chen Jixin Deng Yue Liu Joshua Y Shen Xing-Zhi Song Janette Edson Carmen Troon Daniel Thomas Amber Stephens Lankesha Yapa Tanya Levchenko Richard A Gibbs Desmond W Cooper Terence P Speed Asao Fujiyama Jennifer A M Graves Rachel J O'Neill Andrew J Pask Susan M Forrest Kim C Worley

Genome Biol 2011 Aug 29;12(8):R81. Epub 2011 Aug 29.

The Australian Research Council Centre of Excellence in Kangaroo Genomics, Australia.

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http://dx.doi.org/10.1186/gb-2011-12-8-r81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277949PMC
August 2011

Small RNA class transition from siRNA/piRNA to miRNA during pre-implantation mouse development.

Nucleic Acids Res 2010 Aug 12;38(15):5141-51. Epub 2010 Apr 12.

Department of Molecular Genetics, National Institute of Neuroscience, NCNP, Tokyo, Japan.

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http://dx.doi.org/10.1093/nar/gkq229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2926599PMC
August 2010

Biochemical characterization of a novel indole prenyltransferase from Streptomyces sp. SN-593.

J Bacteriol 2010 Jun 26;192(11):2839-51. Epub 2010 Mar 26.

Chemical Biology Department, Advanced Science Institute, RIKEN, Hirosawa 2-1, Wako, Saitama 351-0198, Japan.

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http://jb.asm.org/cgi/doi/10.1128/JB.01557-09
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http://dx.doi.org/10.1128/JB.01557-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2876496PMC
June 2010

Loss of PINK1 in medaka fish (Oryzias latipes) causes late-onset decrease in spontaneous movement.

Neurosci Res 2010 Feb 4;66(2):151-61. Epub 2009 Nov 4.

Department of Neurology, Kyoto University, Graduate School of Medicine, 54 Shogoin-Kawahara-cho, Sakyo-ku, Kyoto 606-8507, Japan.

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http://dx.doi.org/10.1016/j.neures.2009.10.010DOI Listing
February 2010

Mapping human genetic diversity in Asia.

Science 2009 Dec;326(5959):1541-5

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http://dx.doi.org/10.1126/science.1177074DOI Listing
December 2009

Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells.

BMC Genomics 2009 Nov 20;10:545. Epub 2009 Nov 20.

Cellular Systems Modeling Team, Computational Systems Biology Research Group, Advanced Computational Sciences Department, RIKEN Advanced Science Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1186/1471-2164-10-545DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785842PMC
November 2009

The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family.

BMC Evol Biol 2009 Sep 8;9:224. Epub 2009 Sep 8.

Division of Human Moelcular Genetics, Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.

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http://dx.doi.org/10.1186/1471-2148-9-224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753569PMC
September 2009

Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.

Science 2008 Nov;322(5904):1108-9

Ecomolecular Biorecycling Science Research Team, RIKEN Advanced Science Institute, Saitama 351-0198, Japan.

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http://dx.doi.org/10.1126/science.1165578DOI Listing
November 2008

Absolute quantification of the budding yeast transcriptome by means of competitive PCR between genomic and complementary DNAs.

BMC Genomics 2008 Nov 29;9:574. Epub 2008 Nov 29.

Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa 277-8561, Japan.

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http://dx.doi.org/10.1186/1471-2164-9-574DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612024PMC
November 2008

Specific pathogen free conditions prevent transthyretin amyloidosis in mouse models.

Transgenic Res 2008 Oct 21;17(5):817-26. Epub 2008 Mar 21.

Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Kumamoto, 860-0811, Japan.

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http://dx.doi.org/10.1007/s11248-008-9180-9DOI Listing
October 2008

Phosphoproteome and transcriptome analyses of ErbB ligand-stimulated MCF-7 cells.

Cancer Genomics Proteomics 2008 May-Aug;5(3-4):161-8

Computational and Experimental Systems Biology Group, RIKEN Genomic Sciences Center, Yokohama, Kanagawa 230-0045, Japan.

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October 2008

An N-ethyl-N-nitrosourea-induced mutation in N-acetyltransferase 1 in mice.

Biochem Biophys Res Commun 2008 May 26;370(2):285-8. Epub 2008 Mar 26.

Department of Pediatrics, University of Arizona, 1501 N. Campbell Avenue, P.O. Box 245073, Tucson, AZ 85724, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0006291X0800553
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http://dx.doi.org/10.1016/j.bbrc.2008.03.085DOI Listing
May 2008

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes.

Nature 2008 May 10;453(7194):539-43. Epub 2008 Apr 10.

Division of Human Genetics, Department of Integrated Genetics, National Institute of Genetics, Research Organization of Information and Systems, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1038/nature06908DOI Listing
May 2008

Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell.

Proc Natl Acad Sci U S A 2008 Apr 7;105(14):5555-60. Epub 2008 Apr 7.

Environmental Molecular Biology Laboratory, RIKEN, Saitama 351-0198, Japan.

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http://dx.doi.org/10.1073/pnas.0801389105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2291132PMC
April 2008

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones.

BMC Genomics 2007 Dec 3;8:448. Epub 2007 Dec 3.

Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute (FFPRI), 1 Matsunosato, Tsukuba, Ibaraki 305-8687 JAPAN.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-8-448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2222646PMC
December 2007

Mutation screening of AP3M2 in Japanese epilepsy patients.

Brain Dev 2007 Sep 12;29(8):462-7. Epub 2007 Feb 12.

Comparative Systems Biology Team, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.

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http://dx.doi.org/10.1016/j.braindev.2006.12.004DOI Listing
September 2007

An oligodendrocyte enhancer in a phylogenetically conserved intron region of the mammalian myelin gene Opalin.

J Neurochem 2007 Sep 17;102(5):1533-1547. Epub 2007 Apr 17.

Laboratory for Comparative Neurogenesis, RIKEN Brain Science Institute, Wako-shi, Saitama, JapanLaboratory for Molecular Neurogenesis, RIKEN Brain Science Institute, Wako-shi, Saitama, JapanSequence Technology Team, RIKEN Genomic Science Center, Yokohama, Japan.

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http://dx.doi.org/10.1111/j.1471-4159.2007.04583.xDOI Listing
September 2007

Establishment of cell lines derived from the rat suprachiasmatic nucleus.

Biochem Biophys Res Commun 2007 Apr 9;355(2):555-61. Epub 2007 Feb 9.

Research Group of Chronogenomics, Mitsubishi Kagaku Institute of Life Sciences, 11 Minamiooya, Machida, Tokyo 194-8511, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2007.02.009DOI Listing
April 2007

OmicBrowse: a browser of multidimensional omics annotations.

Bioinformatics 2007 Feb 31;23(4):524-6. Epub 2006 Oct 31.

Genomic Sciences Center, Yokohama Institute, RIKEN, 1-77-22, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btl523DOI Listing
February 2007

Novel peroxisomal protease Tysnd1 processes PTS1- and PTS2-containing enzymes involved in beta-oxidation of fatty acids.

EMBO J 2007 Feb 25;26(3):835-45. Epub 2007 Jan 25.

Immunoinformatics Team, Advanced Genome Information Group, RIKEN Genomic Sciences Center, Yokohama, Kanagawa, Japan.

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http://dx.doi.org/10.1038/sj.emboj.7601525DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794383PMC
February 2007

LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1.

Proc Natl Acad Sci U S A 2007 Feb 30;104(6):1859-64. Epub 2007 Jan 30.

Laboratory of Chronogenomics, Mitsubishi Kagaku Institute of Life Sciences, Minamiooya, Machida, Tokyo, Japan.

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http://dx.doi.org/10.1073/pnas.0607567104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794262PMC
February 2007

A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 11q: comparison with chromosome 21q.

DNA Seq 2006 Aug;17(4):300-6

Department of Information and Systems Engineering, Faculty of Engineering, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.

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http://dx.doi.org/10.1080/10425170600886128DOI Listing
August 2006

Determination of genomic breakpoints in an epileptic patient using genotyping array.

Biochem Biophys Res Commun 2006 Mar 19;341(3):792-6. Epub 2006 Jan 19.

Comparative Systems Biology Team, Genomic Sciences Center, RIKEN, Yokohama, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2006.01.032DOI Listing
March 2006

Constitutive expression of the Period1 gene impairs behavioral and molecular circadian rhythms.

Proc Natl Acad Sci U S A 2006 Mar 28;103(10):3716-21. Epub 2006 Feb 28.

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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http://dx.doi.org/10.1073/pnas.0600060103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1450145PMC
March 2006

A novel strategy to design highly specific PCR primers based on the stability and uniqueness of 3'-end subsequences.

Bioinformatics 2005 Dec 18;21(24):4363-70. Epub 2005 Oct 18.

Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo Kashiwa, Japan.

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http://dx.doi.org/10.1093/bioinformatics/bti716DOI Listing
December 2005

[Human Genome Project and its impact on biology and medicine].

Authors:
Yoshiyuki Sakaki

Tanpakushitsu Kakusan Koso 2005 Dec;50(16 Suppl):2047-52

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December 2005

Production of inbred and hybrid transgenic mice carrying large (> 200 kb) foreign DNA fragments by intracytoplasmic sperm injection.

Mol Reprod Dev 2005 Nov;72(3):329-35

Department of Anatomy and Reproductive Biology, The Institute for Biogenesis Research, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii, USA.

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http://dx.doi.org/10.1002/mrd.20319DOI Listing
November 2005

Identification of large ancient duplications associated with human gene deserts.

Nat Genet 2005 Oct 25;37(10):1041-3. Epub 2005 Sep 25.

Research Center for Advanced Science and Technology, Mitsubishi Research Institute, Inc., Tokyo 100-8141, Japan.

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http://dx.doi.org/10.1038/ng1648DOI Listing
October 2005

Comparative genomics approach toward critical determinants for the imprinting of an evolutionarily conserved gene Impact.

Biochem Biophys Res Commun 2005 Apr;329(3):824-30

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2005.02.048DOI Listing
April 2005

Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region.

Genome Res 2005 Jan 8;15(1):154-65. Epub 2004 Dec 8.

Division of Human Genetics, Department of Integrated Genetics, National Institute of Genetics, Research Organization of Information and Systems, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1101/gr.2609605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540284PMC
January 2005

[Genome network project: a national project in post-sequence era].

Tanpakushitsu Kakusan Koso 2004 Dec;49(17 Suppl):2986-92

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December 2004

An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors.

DNA Res 2004 Dec;11(6):381-90

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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http://dx.doi.org/10.1093/dnares/11.6.381DOI Listing
December 2004

A 210-kb segment of tandem repeats and retroelements located between imprinted subdomains of mouse distal chromosome 7.

DNA Res 2004 Oct;11(5):325-34

Division of Human Genetics, Department of Integrated Genetics, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1093/dnares/11.5.325DOI Listing
October 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004

Analysis of gene network regulating yeast multidrug resistance by artificial activation of transcription factors: involvement of Pdr3 in salt tolerance.

Gene 2004 May;332:51-9

Division of Genome Biology, Cancer Research Institute, Kanazawa University, Kanazawa 920-0934, Japan.

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http://dx.doi.org/10.1016/j.gene.2004.02.003DOI Listing
May 2004

Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates.

Genome Biol 2003 28;4(11):R74. Epub 2003 Oct 28.

School and Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8501, Japan.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2003-4-11-r74DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC329124PMC
March 2004

Temporal precision in the mammalian circadian system: a reliable clock from less reliable neurons.

J Biol Rhythms 2004 Feb;19(1):35-46

Department of Biology, Washington University, St. Louis, MO 63130, USA.

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http://dx.doi.org/10.1177/0748730403260776DOI Listing
February 2004

Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.

BMC Genomics 2004 Feb 23;5(1):16. Epub 2004 Feb 23.

RIKEN Genomic Sciences Center, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, JAPAN.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-5-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC375527PMC
February 2004

Association analysis of the SHC1 gene locus with longevity in the Japanese population.

J Mol Med (Berl) 2003 Nov 2;81(11):724-8. Epub 2003 Oct 2.

Human Genome Research Group, RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.

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http://dx.doi.org/10.1007/s00109-003-0485-0DOI Listing
November 2003

A novel index which precisely derives protein coding regions from cross-species genome alignments.

Genome Inform 2002 ;13:183-91

Genomic Sciences Center, RIKEN, 1-7-22 Furo-cho, Tsurumi-ku, Yokohama 230-0045, Japan.

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November 2003

Isolation and expression of Napor/CUG-BP2 in embryo development.

Biochem Biophys Res Commun 2003 Jun;305(3):448-54

Department of Neurology and Neuroscience, Cornell University, New York, NY 10021, USA.

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http://dx.doi.org/10.1016/s0006-291x(03)00789-7DOI Listing
June 2003

Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.

Nat Biotechnol 2003 May 14;21(5):526-31. Epub 2003 Apr 14.

Kitasato Institute for Life Sciences, Kitasato University, Kanagawa 228-8555, Japan.

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http://www.nature.com/articles/nbt820
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http://dx.doi.org/10.1038/nbt820DOI Listing
May 2003

Genomic organization and promoter analysis of the Dnmt3b gene.

Gene 2003 May;310:151-9

Division of Gene Therapy Science, Osaka University School of Medicine, 2-2 Yamada-oka, Suita, 565-0870, Osaka, Japan.

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http://dx.doi.org/10.1016/s0378-1119(03)00545-6DOI Listing
May 2003

[Studies of DNA, genome, and the Human Genome Project].

Authors:
Yoshiyuki Sakaki

Tanpakushitsu Kakusan Koso 2003 May;48(6):684-5

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May 2003

Breakpoints at 1p36.3 in three MDS/AML(M4) patients with t(1;3)(p36;q21) occur in the first intron and in the 5' region of MEL1.

Genes Chromosomes Cancer 2003 Mar;36(3):313-6

Division of Molecular Cytogenetics, Department of Clinical Pathology, Research Institute of International Medical Center of Japan, Tokyo, Japan.

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http://dx.doi.org/10.1002/gcc.10176DOI Listing
March 2003

Structural and functional analysis of 3' untranslated region of mouse Period1 mRNA.

Biochem Biophys Res Commun 2003 Jan;301(1):1-7

Laboratory of Functional Genomics, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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http://dx.doi.org/10.1016/s0006-291x(02)02938-8DOI Listing
January 2003

Familial 14-Mb deletion at 21q11.2-q21.3 and variable phenotypic expression.

J Hum Genet 2002 ;47(10):511-6

Department of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan.

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http://dx.doi.org/10.1007/s100380200076DOI Listing
December 2002

Identification of the breakpoints at 1p36.2 and 3p21.3 in an AML(M3) patient who had t(1;3)(p36.2;p21.3) at the third relapse.

Genes Chromosomes Cancer 2002 Dec;35(4):365-7

Division of Molecular Cytogenetics, Department of Clinical Pathology, Research Institute of International Medical Center of Japan, Tokyo, Japan.

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http://dx.doi.org/10.1002/gcc.10130DOI Listing
December 2002

[Post-genome sequence era and medicine].

Authors:
Yoshiyuki Sakaki

Masui 2002 Dec;51 Suppl:S10-5

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December 2002

Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region.

Genome Res 2002 Sep;12(9):1323-32

Human Genome Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, Japan.

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http://dx.doi.org/10.1101/gr.153702DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186650PMC
September 2002

Dendritic cell appearance and differentiation during early and late stages of rat stomach carcinogenesis.

Jpn J Cancer Res 2002 Aug;93(8):925-34

Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo 108-8639, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5927111PMC
http://dx.doi.org/10.1111/j.1349-7006.2002.tb01339.xDOI Listing
August 2002