Publications by authors named "Yoshinari Ando"

22Publications

An era of single-cell genomics consortia.

Exp Mol Med 2020 Sep 15;52(9):1409-1418. Epub 2020 Sep 15.

RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-Cho, Tsurumi-Ku, Yokohama, 230-0045, Japan.

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http://dx.doi.org/10.1038/s12276-020-0409-xDOI Listing
September 2020

ELTA: Enzymatic Labeling of Terminal ADP-Ribose.

Mol Cell 2019 02 31;73(4):845-856.e5. Epub 2019 Jan 31.

Department of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD 21205, USA; Department of Molecular Biology and Genetics, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, USA; Department of Oncology, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2018.12.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6629254PMC
February 2019

Identifying and characterizing functional 3' nucleotide addition in the miRNA pathway.

Methods 2019 01 20;152:23-30. Epub 2018 Aug 20.

Division of Cancer Stem Cell, National Cancer Center Research Institute, Tokyo, Japan.

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http://dx.doi.org/10.1016/j.ymeth.2018.08.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6311138PMC
January 2019

Methods for studying microRNA functions during stress.

Methods Mol Biol 2015 ;1292:115-28

Department of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, 21205, USA.

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http://dx.doi.org/10.1007/978-1-4939-2522-3_9DOI Listing
December 2015

Telomerase reverse transcriptase regulates microRNAs.

Int J Mol Sci 2015 Jan 6;16(1):1192-208. Epub 2015 Jan 6.

Cancer Stem Cell Project, National Cancer Center Research Institute, 5-1-1 Tsukiji, Chuo-ku, Tokyo 104-0045, Japan.

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http://dx.doi.org/10.3390/ijms16011192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4307298PMC
January 2015

New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Wiley Interdiscip Rev RNA 2014 Mar-Apr;5(2):141-81. Epub 2013 Dec 5.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1002/wrna.1210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066877PMC
September 2014

Does an emergency visit to the ER make microRNAs stronger during stress?

Mol Cell 2013 Oct;52(1):1-3

Department of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1016/j.molcel.2013.09.022DOI Listing
October 2013

CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication.

Biochem Biophys Res Commun 2012 Sep 17;426(1):141-7. Epub 2012 Aug 17.

RIKEN Omics Science Center, 1-7-22 Suehiro-cho, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2012.08.053DOI Listing
September 2012

Poly(ADP-ribose) regulates post-transcriptional gene regulation in the cytoplasm.

RNA Biol 2012 May 1;9(5):542-8. Epub 2012 May 1.

Department of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.4161/rna.19899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3495734PMC
May 2012

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns.

Nucleic Acids Res 2012 Feb 3;40(4):1424-37. Epub 2011 Nov 3.

Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama-shi, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1093/nar/gkr903DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287202PMC
February 2012

Two-step cleavage of hairpin RNA with 5' overhangs by human DICER.

BMC Mol Biol 2011 Feb 9;12. Epub 2011 Feb 9.

RIKEN Omics Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.

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http://dx.doi.org/10.1186/1471-2199-12-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048551PMC
February 2011

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:
Harukazu Suzuki Alistair R R Forrest Erik van Nimwegen Carsten O Daub Piotr J Balwierz Katharine M Irvine Timo Lassmann Timothy Ravasi Yuki Hasegawa Michiel J L de Hoon Shintaro Katayama Kate Schroder Piero Carninci Yasuhiro Tomaru Mutsumi Kanamori-Katayama Atsutaka Kubosaki Altuna Akalin Yoshinari Ando Erik Arner Maki Asada Hiroshi Asahara Timothy Bailey Vladimir B Bajic Denis Bauer Anthony G Beckhouse Nicolas Bertin Johan Björkegren Frank Brombacher Erika Bulger Alistair M Chalk Joe Chiba Nicole Cloonan Adam Dawe Josee Dostie Pär G Engström Magbubah Essack Geoffrey J Faulkner J Lynn Fink David Fredman Ko Fujimori Masaaki Furuno Takashi Gojobori Julian Gough Sean M Grimmond Mika Gustafsson Megumi Hashimoto Takehiro Hashimoto Mariko Hatakeyama Susanne Heinzel Winston Hide Oliver Hofmann Michael Hörnquist Lukasz Huminiecki Kazuho Ikeo Naoko Imamoto Satoshi Inoue Yusuke Inoue Ryoko Ishihara Takao Iwayanagi Anders Jacobsen Mandeep Kaur Hideya Kawaji Markus C Kerr Ryuichiro Kimura Syuhei Kimura Yasumasa Kimura Hiroaki Kitano Hisashi Koga Toshio Kojima Shinji Kondo Takeshi Konno Anders Krogh Adele Kruger Ajit Kumar Boris Lenhard Andreas Lennartsson Morten Lindow Marina Lizio Cameron Macpherson Norihiro Maeda Christopher A Maher Monique Maqungo Jessica Mar Nicholas A Matigian Hideo Matsuda John S Mattick Stuart Meier Sei Miyamoto Etsuko Miyamoto-Sato Kazuhiko Nakabayashi Yutaka Nakachi Mika Nakano Sanne Nygaard Toshitsugu Okayama Yasushi Okazaki Haruka Okuda-Yabukami Valerio Orlando Jun Otomo Mikhail Pachkov Nikolai Petrovsky Charles Plessy John Quackenbush Aleksandar Radovanovic Michael Rehli Rintaro Saito Albin Sandelin Sebastian Schmeier Christian Schönbach Ariel S Schwartz Colin A Semple Miho Sera Jessica Severin Katsuhiko Shirahige Cas Simons George St Laurent Masanori Suzuki Takahiro Suzuki Matthew J Sweet Ryan J Taft Shizu Takeda Yoichi Takenaka Kai Tan Martin S Taylor Rohan D Teasdale Jesper Tegnér Sarah Teichmann Eivind Valen Claes Wahlestedt Kazunori Waki Andrew Waterhouse Christine A Wells Ole Winther Linda Wu Kazumi Yamaguchi Hiroshi Yanagawa Jun Yasuda Mihaela Zavolan David A Hume Takahiro Arakawa Shiro Fukuda Kengo Imamura Chikatoshi Kai Ai Kaiho Tsugumi Kawashima Chika Kawazu Yayoi Kitazume Miki Kojima Hisashi Miura Kayoko Murakami Mitsuyoshi Murata Noriko Ninomiya Hiromi Nishiyori Shohei Noma Chihiro Ogawa Takuma Sano Christophe Simon Michihira Tagami Yukari Takahashi Jun Kawai Yoshihide Hayashizaki

Nat Genet 2009 May 19;41(5):553-62. Epub 2009 Apr 19.

RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.

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http://dx.doi.org/10.1038/ng.375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711855PMC
May 2009

Restriction landmark genomic scanning.

Nat Protoc 2006 ;1(6):2774-83

Functional RNA Research Program, Frontier Research System, and Genome Exploration Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.

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http://dx.doi.org/10.1038/nprot.2006.350DOI Listing
November 2007

Bacillus subtilis DEAD protein YdbR possesses ATPase, RNA binding, and RNA unwinding activities.

Biosci Biotechnol Biochem 2006 Jul;70(7):1606-15

Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba-shi, Ibaraki 305-8572, Japan.

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http://dx.doi.org/10.1271/bbb.50678DOI Listing
July 2006

Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome.

Microbiology (Reading) 2002 Aug;148(Pt 8):2591-2598

Institute of Biological Sciences, University of Tsukuba, Tsukuba-shi, Ibaraki 305-8572, Japan1.

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http://dx.doi.org/10.1099/00221287-148-8-2591DOI Listing
August 2002

Expression of a small RNA, BS203 RNA, from the yocI-yocJ intergenic region of Bacillus subtilis genome.

FEMS Microbiol Lett 2002 Jan;207(1):29-33

Institute of Biological Sciences, University of Tsukuba, Ibaraki 305-8572, Tsukuba-shi, Japan.

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http://dx.doi.org/10.1111/j.1574-6968.2002.tb11023.xDOI Listing
January 2002