Yoshiho Ikeuchi

Yoshiho Ikeuchi

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Yoshiho Ikeuchi

Yoshiho Ikeuchi

Publications by authors named "Yoshiho Ikeuchi"

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42Publications

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A Human Induced Pluripotent Stem Cell-Derived Tissue Model of a Cerebral Tract Connecting Two Cortical Regions.

iScience 2019 Apr 18;14:301-311. Epub 2019 Apr 18.

Institute of Industrial Science, The University of Tokyo, Tokyo, Japan; Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, Tokyo, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.isci.2019.03.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489017PMC
April 2019

Characterization of a Mouse Model of Börjeson-Forssman-Lehmann Syndrome.

Cell Rep 2018 11;25(6):1404-1414.e6

Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110, USA; Division of Biology and Biomedical Sciences, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183163
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http://dx.doi.org/10.1016/j.celrep.2018.10.043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6261530PMC
November 2018

Bundle Gel Fibers with a Tunable Microenvironment for in Vitro Neuron Cell Guiding.

ACS Appl Mater Interfaces 2017 Dec 29;9(49):43250-43257. Epub 2017 Nov 29.

Institute of Industrial Science, The University of Tokyo , 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

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http://dx.doi.org/10.1021/acsami.7b14585DOI Listing
December 2017

Generation of a Motor Nerve Organoid with Human Stem Cell-Derived Neurons.

Stem Cell Reports 2017 11 26;9(5):1441-1449. Epub 2017 Oct 26.

Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan; Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2017.09.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831012PMC
November 2017

Compartmentalized embryoid body culture for induction of spatially patterned differentiation.

Biomicrofluidics 2017 Jul 2;11(4):041101. Epub 2017 Aug 2.

Center for International Research on Integrative Biomedical Systems, Institute of Industrial Science, The University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1063/1.4994989DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552387PMC
July 2017

A Cdh1-APC/FMRP Ubiquitin Signaling Link Drives mGluR-Dependent Synaptic Plasticity in the Mammalian Brain.

Neuron 2015 May 23;86(3):726-39. Epub 2015 Apr 23.

Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S08966273150027
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http://dx.doi.org/10.1016/j.neuron.2015.03.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492466PMC
May 2015

TIF1γ protein regulates epithelial-mesenchymal transition by operating as a small ubiquitin-like modifier (SUMO) E3 ligase for the transcriptional regulator SnoN1.

J Biol Chem 2014 Sep 24;289(36):25067-78. Epub 2014 Jul 24.

the Southern Alberta Cancer Research Institute and Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada

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http://dx.doi.org/10.1074/jbc.M114.575878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155673PMC
September 2014

A single acetylation of 18 S rRNA is essential for biogenesis of the small ribosomal subunit in Saccharomyces cerevisiae.

J Biol Chem 2014 Sep 1;289(38):26201-12. Epub 2014 Aug 1.

From the Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan

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http://dx.doi.org/10.1074/jbc.M114.593996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4176211PMC
September 2014

Discovery of the β-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs.

Nucleic Acids Res 2014 Aug 24;42(14):9350-65. Epub 2014 Jul 24.

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan

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http://dx.doi.org/10.1093/nar/gku618DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132733PMC
August 2014

A novel Hap1-Tsc1 interaction regulates neuronal mTORC1 signaling and morphogenesis in the brain.

J Neurosci 2013 Nov;33(46):18015-21

Department of Neurobiology, Harvard Medical School, Boston, Massachusetts 02115, Program in Neuroscience, Harvard Medical School, Boston, Massachusetts 02115, Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, Missouri 63110, and Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115.

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http://dx.doi.org/10.1523/JNEUROSCI.2290-13.2013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3828457PMC
November 2013

The XLID protein PQBP1 and the GTPase Dynamin 2 define a signaling link that orchestrates ciliary morphogenesis in postmitotic neurons.

Cell Rep 2013 Sep 29;4(5):879-89. Epub 2013 Aug 29.

Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.celrep.2013.07.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4013279PMC
September 2013

Base methylations in the double-stranded RNA by a fused methyltransferase bearing unwinding activity.

Nucleic Acids Res 2012 May 30;40(9):4071-85. Epub 2011 Dec 30.

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.

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http://dx.doi.org/10.1093/nar/gkr1287DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3351187PMC
May 2012

A CaMKIIβ signaling pathway at the centrosome regulates dendrite patterning in the brain.

Nat Neurosci 2011 Jul 3;14(8):973-83. Epub 2011 Jul 3.

Department of Pathology, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/nn.2857DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3391735PMC
July 2011

An OBSL1-Cul7Fbxw8 ubiquitin ligase signaling mechanism regulates Golgi morphology and dendrite patterning.

PLoS Biol 2011 May 10;9(5):e1001060. Epub 2011 May 10.

Department of Pathology, Harvard Medical School, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1001060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091842PMC
May 2011

A JIP3-regulated GSK3β/DCX signaling pathway restricts axon branching.

J Neurosci 2010 Dec;30(50):16766-76

Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1523/JNEUROSCI.1362-10.2010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409248PMC
December 2010

Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.

Nat Chem Biol 2010 Apr 7;6(4):277-82. Epub 2010 Feb 7.

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1038/nchembio.323DOI Listing
April 2010

RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon.

EMBO J 2009 May 26;28(9):1362-73. Epub 2009 Mar 26.

Faculty of Advanced Life Sciences, Hokkaido University, Sapporo, Japan.

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http://dx.doi.org/10.1038/emboj.2009.69DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683049PMC
May 2009

The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon.

EMBO J 2008 Aug 31;27(16):2194-203. Epub 2008 Jul 31.

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1038/emboj.2008.154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2500205PMC
August 2008

Mass spectrometric identification and characterization of RNA-modifying enzymes.

Methods Enzymol 2007 ;425:211-29

Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1016/S0076-6879(07)25009-8DOI Listing
September 2007

The substrate specificity of tRNA (m1G37) methyltransferase (TrmD) from Aquifex aeolicus.

Genes Cells 2006 Dec;11(12):1353-65

Department of Applied Chemistry, Faculty of Engineering, Ehime University, Bunkyo 3, Matsuyama 790-8577, Japan.

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http://doi.wiley.com/10.1111/j.1365-2443.2006.01022.x
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http://dx.doi.org/10.1111/j.1365-2443.2006.01022.xDOI Listing
December 2006

Snapshots of tRNA sulphuration via an adenylated intermediate.

Nature 2006 Jul;442(7101):419-24

Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama-shi, Kanagawa 226-8501, Japan.

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http://dx.doi.org/10.1038/nature04896DOI Listing
July 2006

Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA.

EMBO J 2006 May 27;25(10):2142-54. Epub 2006 Apr 27.

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1038/sj.emboj.7601105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462984PMC
May 2006

Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu).

Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 Apr 10;62(Pt 4):368-71. Epub 2006 Mar 10.

Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama-shi, Kanagawa 226-8501, Japan.

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http://dx.doi.org/10.1107/S174430910600738XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2222564PMC
April 2006

Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex.

Structure 2006 Feb;14(2):357-66

Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama-shi, Kanagawa 226-8501, Japan.

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http://dx.doi.org/10.1016/j.str.2005.11.009DOI Listing
February 2006

Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation.

Mol Microbiol 2006 Jan;59(1):265-75

Department of Biology, Graduate School of Science, Tokyo Metropolitan University, Minamiohsawa, Hachioji, Tokyo 192-0397, Japan.

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http://dx.doi.org/10.1111/j.1365-2958.2005.04932.xDOI Listing
January 2006

Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions.

Mol Cell 2006 Jan;21(1):97-108

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S109727650501761
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http://dx.doi.org/10.1016/j.molcel.2005.11.001DOI Listing
January 2006

molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition.

Mol Cell 2005 Jul;19(2):235-46

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan.

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http://dx.doi.org/10.1016/j.molcel.2005.06.007DOI Listing
July 2005

Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain.

Proc Natl Acad Sci U S A 2005 May 13;102(21):7487-92. Epub 2005 May 13.

Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Midori-ku, Yokohama-shi, Kanagawa 226-8501, Japan.

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http://dx.doi.org/10.1073/pnas.0501003102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1140429PMC
May 2005

Substrate tRNA recognition mechanism of tRNA (m7G46) methyltransferase from Aquifex aeolicus.

J Biol Chem 2004 Nov 8;279(47):49151-9. Epub 2004 Sep 8.

Department of Applied Chemistry, Faculty of Engineering, Ehime University, Bunkyo 3, Matsuyama, 790-8577, Japan.

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http://dx.doi.org/10.1074/jbc.M408209200DOI Listing
November 2004

An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA.

Mol Cell 2003 Sep;12(3):689-98

Department of Life Science, College of Science, Rikkyo (St. Paul's) University, 3-34-1 Nishi-ikebukuro, Toshima-ku, Tokyo 171-8501, Japan.

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http://dx.doi.org/10.1016/s1097-2765(03)00346-0DOI Listing
September 2003