Yoshihiro Kawahara

Yoshihiro Kawahara

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Yoshihiro Kawahara

Yoshihiro Kawahara

Publications by authors named "Yoshihiro Kawahara"

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36Publications

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Exploring Behaviors of Caterpillar-Like Soft Robots with a Central Pattern Generator-Based Controller and Reinforcement Learning.

Soft Robot 2019 10 20;6(5):579-594. Epub 2019 May 20.

Graduate School of Information Science and Technology, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1089/soro.2018.0126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6786347PMC
October 2019

TASUKE+: a web-based platform for exploring GWAS results and large-scale resequencing data.

DNA Res 2019 Sep 20. Epub 2019 Sep 20.

Advanced Analysis Center, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan.

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http://dx.doi.org/10.1093/dnares/dsz022DOI Listing
September 2019

Gene expression of rice seeds surviving 13- and 20-month exposure to space environment.

Life Sci Space Res (Amst) 2016 Nov 18;11:10-17. Epub 2016 Oct 18.

Institute of Biomedical Problems of Russian Academy of Sciences, 76a Khorosheevskoe shosse, Moscow 123007, Russia.

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http://dx.doi.org/10.1016/j.lssr.2016.10.001DOI Listing
November 2016

Low-Cost Soil Moisture Profile Probe Using Thin-Film Capacitors and a Capacitive Touch Sensor.

Sensors (Basel) 2016 Aug 15;16(8). Epub 2016 Aug 15.

Graduate School of Information Science and Technology, The University of Tokyo, Tokyo 113-8656, Japan.

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http://dx.doi.org/10.3390/s16081292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5017457PMC
August 2016

TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice.

Plant Cell Physiol 2016 Jan 16;57(1):e7. Epub 2015 Nov 16.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan

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http://dx.doi.org/10.1093/pcp/pcv179DOI Listing
January 2016

Punctual transcriptional regulation by the rice circadian clock under fluctuating field conditions.

Plant Cell 2015 Mar 10;27(3):633-48. Epub 2015 Mar 10.

Functional Plant Research Unit, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan

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http://dx.doi.org/10.1105/tpc.114.135582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4558668PMC
March 2015

A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy.

DNA Res 2013 Dec 15;20(6):623-31. Epub 2013 Aug 15.

1Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kan-nondai, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/dnares/dst036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3859328PMC
December 2013

Strand-Specific RNA-Seq Provides Greater Resolution of Transcriptome Profiling.

Curr Genomics 2013 May;14(3):173-81

School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia.

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http://dx.doi.org/10.2174/1389202911314030003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664467PMC
May 2013

Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction.

PLoS One 2012 6;7(11):e49423. Epub 2012 Nov 6.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0049423PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3490861PMC
April 2013

Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5.

Front Plant Sci 2011 6;2:16. Epub 2011 Jun 6.

Plant Genome Research Unit, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences Tsukuba, Ibaraki, Japan.

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http://dx.doi.org/10.3389/fpls.2011.00016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3355683PMC
August 2012

Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-interaction.

BMC Plant Biol 2012 Jul 29;12:121. Epub 2012 Jul 29.

National Institute of Agrobiological Sciences, Agrogenomics Research Center, 1-2, Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1186/1471-2229-12-121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3480847PMC
July 2012

Independent domestication of Asian rice followed by gene flow from japonica to indica.

Mol Biol Evol 2012 May 22;29(5):1471-9. Epub 2011 Dec 22.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.

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http://dx.doi.org/10.1093/molbev/msr315DOI Listing
May 2012

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

BMC Genomics 2010 Dec 2;11:683. Epub 2010 Dec 2.

National Institute of Agrobiological Sciences (NIAS), Division of Genome and Biodiversity Research, 1-2 Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1186/1471-2164-11-683DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3016417PMC
December 2010

G-compass: a web-based comparative genome browser between human and other vertebrate genomes.

Bioinformatics 2009 Dec 21;25(24):3321-2. Epub 2009 Oct 21.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btp594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788932PMC
December 2009

Catalytic reaction mechanism of goose egg-white lysozyme by molecular modelling of enzyme-substrate complex.

J Biochem 2008 Dec 9;144(6):753-61. Epub 2008 Oct 9.

Kyushu University, Hakozaki, Higashi-ku, Fukuoka, Japan.

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http://dx.doi.org/10.1093/jb/mvn133DOI Listing
December 2008

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Authors:
Chisato Yamasaki Katsuhiko Murakami Yasuyuki Fujii Yoshiharu Sato Erimi Harada Jun-ichi Takeda Takayuki Taniya Ryuichi Sakate Shingo Kikugawa Makoto Shimada Motohiko Tanino Kanako O Koyanagi Roberto A Barrero Craig Gough Hong-Woo Chun Takuya Habara Hideki Hanaoka Yosuke Hayakawa Phillip B Hilton Yayoi Kaneko Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Akihiro Matsuya Naoki Nagata Kensaku Nishikata Akiko Ogura Noda Shin Nurimoto Naomi Saichi Hiroaki Sakai Ryoko Sanbonmatsu Rie Shiba Mami Suzuki Kazuhiko Takabayashi Aiko Takahashi Takuro Tamura Masayuki Tanaka Susumu Tanaka Fusano Todokoro Kaori Yamaguchi Naoyuki Yamamoto Toshihisa Okido Jun Mashima Aki Hashizume Lihua Jin Kyung-Bum Lee Yi-Chueh Lin Asami Nozaki Katsunaga Sakai Masahito Tada Satoru Miyazaki Takashi Makino Hajime Ohyanagi Naoki Osato Nobuhiko Tanaka Yoshiyuki Suzuki Kazuho Ikeo Naruya Saitou Hideaki Sugawara Claire O'Donovan Tamara Kulikova Eleanor Whitfield Brian Halligan Mary Shimoyama Simon Twigger Kei Yura Kouichi Kimura Tomohiro Yasuda Tetsuo Nishikawa Yutaka Akiyama Chie Motono Yuri Mukai Hideki Nagasaki Makiko Suwa Paul Horton Reiko Kikuno Osamu Ohara Doron Lancet Eric Eveno Esther Graudens Sandrine Imbeaud Marie Anne Debily Yoshihide Hayashizaki Clara Amid Michael Han Andreas Osanger Toshinori Endo Michael A Thomas Mika Hirakawa Wojciech Makalowski Mitsuteru Nakao Nam-Soon Kim Hyang-Sook Yoo Sandro J De Souza Maria de Fatima Bonaldo Yoshihito Niimura Vladimir Kuryshev Ingo Schupp Stefan Wiemann Matthew Bellgard Masafumi Shionyu Libin Jia Danielle Thierry-Mieg Jean Thierry-Mieg Lukas Wagner Qinghua Zhang Mitiko Go Shinsei Minoshima Masafumi Ohtsubo Kousuke Hanada Peter Tonellato Takao Isogai Ji Zhang Boris Lenhard Sangsoo Kim Zhu Chen Ursula Hinz Anne Estreicher Kenta Nakai Izabela Makalowska Winston Hide Nicola Tiffin Laurens Wilming Ranajit Chakraborty Marcelo Bento Soares Maria Luisa Chiusano Yutaka Suzuki Charles Auffray Yumi Yamaguchi-Kabata Takeshi Itoh Teruyoshi Hishiki Satoshi Fukuchi Ken Nishikawa Sumio Sugano Nobuo Nomura Yoshio Tateno Tadashi Imanishi Takashi Gojobori

Nucleic Acids Res 2008 Jan 18;36(Database issue):D793-9. Epub 2007 Dec 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Japan.

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http://dx.doi.org/10.1093/nar/gkm999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238988PMC
January 2008

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Genomic drift and copy number variation of sensory receptor genes in humans.

Proc Natl Acad Sci U S A 2007 Dec 5;104(51):20421-6. Epub 2007 Dec 5.

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, 328 Mueller Laboratory, University Park, PA 16802, USA.

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http://dx.doi.org/10.1073/pnas.0709956104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2154446PMC
December 2007

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group.

BMC Evol Biol 2007 Jan 29;7. Epub 2007 Jan 29.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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http://www.biomedcentral.com/1471-2148/7/9
Publisher Site
http://dx.doi.org/10.1186/1471-2148-7-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1790889PMC
January 2007

Construction of enzyme-substrate complexes between hen egg-white lysozyme and N-acetyl-D-glucosamine hexamer by systematic conformational search and molecular dynamics simulation.

J Biochem 2006 Aug 6;140(2):221-7. Epub 2006 Jul 6.

Graduate School of Systems Life Sciences and Graduate School of Genetic Resource Technology, Kyushu University, Hakozaki, Higashi-ku, Fukuoka 812-8581.

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http://dx.doi.org/10.1093/jb/mvj142DOI Listing
August 2006

Comparative sequence analysis of a gene-dense region among closely related species of Drosophila melanogaster.

Genes Genet Syst 2004 Dec;79(6):351-9

Department of Biological Sciences, Tokyo Metropolitan University, 1-1 Minami-osawa, Hachioji-shi, Tokyo 192-0397, Japan.

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http://dx.doi.org/10.1266/ggs.79.351DOI Listing
December 2004

Postoperative regression of desmoplastic infantile gangliogliomas: report of two cases.

Neurosurgery 2003 Oct;53(4):979-83; discussion 983-4

Department of Neurosurgery, Faculty of Medicine, Kagoshima University, Kagoshima, Japan.

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http://dx.doi.org/10.1227/01.neu.0000084165.60662.6dDOI Listing
October 2003

Germinoma with syncytiotrophoblastic giant cells recurring 13 years after radiotherapy for a pineal germinoma--case report.

Neurol Med Chir (Tokyo) 2003 Mar;43(3):146-9

Department of Neurosurgery, Faculty of Medicine, University of Kagoshima, Kagoshima, Japan.

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http://dx.doi.org/10.2176/nmc.43.146DOI Listing
March 2003