Yoshiaki Nagamura

Yoshiaki Nagamura

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Yoshiaki Nagamura

Yoshiaki Nagamura

Publications by authors named "Yoshiaki Nagamura"

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58Publications

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Genome-wide analysis of spatiotemporal gene expression patterns during early embryogenesis in rice.

Development 2016 Apr 22;143(7):1217-27. Epub 2016 Feb 22.

Genome Resource Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1242/dev.123661DOI Listing
April 2016

Serotonin attenuates biotic stress and leads to lesion browning caused by a hypersensitive response to Magnaporthe oryzae penetration in rice.

Plant J 2016 Jan 26;85(1):46-56. Epub 2015 Dec 26.

NARO Agricultural Research Center, 3-1-1 Kannondai, Tsukuba, Ibaraki, 305-8666, Japan.

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http://dx.doi.org/10.1111/tpj.13083DOI Listing
January 2016

Coexpression Network Analysis of Macronutrient Deficiency Response Genes in Rice.

Rice (N Y) 2015 Dec 24;8(1):59. Epub 2015 Jul 24.

Genome Resource Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan,

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http://dx.doi.org/10.1186/s12284-015-0059-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4513034PMC
December 2015

Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.

Plant Mol Biol 2015 Oct 30;89(3):293-307. Epub 2015 Aug 30.

Experimental Farm, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.

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http://dx.doi.org/10.1007/s11103-015-0369-zDOI Listing
October 2015

Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting.

Plant Cell Physiol 2015 Jan 4;56(1):116-25. Epub 2014 Nov 4.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan Graduate School of Nanobioscience, Yokohama City University, 22-2 Seto, Kanazawa, Yokohama, 236-0027 Japan

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http://dx.doi.org/10.1093/pcp/pcu153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4301741PMC
January 2015

Strigolactone and cytokinin act antagonistically in regulating rice mesocotyl elongation in darkness.

Plant Cell Physiol 2014 Jan 21;55(1):30-41. Epub 2013 Oct 21.

Graduate School of Agricultural and Life Sciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657 Japan.

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http://dx.doi.org/10.1093/pcp/pct150DOI Listing
January 2014

Roles of pollen-specific boron efflux transporter, OsBOR4, in the rice fertilization process.

Plant Cell Physiol 2013 Dec 24;54(12):2011-9. Epub 2013 Sep 24.

Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan.

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http://dx.doi.org/10.1093/pcp/pct136DOI Listing
December 2013

Identification of transcription factors involved in rice secondary cell wall formation.

Plant Cell Physiol 2013 Nov 1;54(11):1791-802. Epub 2013 Oct 1.

Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, Japan.

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http://dx.doi.org/10.1093/pcp/pct122DOI Listing
November 2013

Survey of genes involved in rice secondary cell wall formation through a co-expression network.

Plant Cell Physiol 2013 Nov 1;54(11):1803-21. Epub 2013 Oct 1.

Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, Japan.

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http://dx.doi.org/10.1093/pcp/pct121DOI Listing
November 2013

Global transcriptome profile of rice root in response to essential macronutrient deficiency.

Plant Signal Behav 2013 Jun 19;8(6):e24409. Epub 2013 Apr 19.

Genome Resource Unit; National Institute of Agrobiological Sciences; Tsukuba, Ibaraki, Japan.

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http://dx.doi.org/10.4161/psb.24409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907390PMC
June 2013

RiceXPro version 3.0: expanding the informatics resource for rice transcriptome.

Nucleic Acids Res 2013 Jan 23;41(Database issue):D1206-13. Epub 2012 Nov 23.

Genome Resource Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gks1125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531122PMC
January 2013

RiceFREND: a platform for retrieving coexpressed gene networks in rice.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D1214-21. Epub 2012 Nov 24.

Genome Resource Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gks1122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531108PMC
January 2013

Deciphering and prediction of transcriptome dynamics under fluctuating field conditions.

Cell 2012 Dec;151(6):1358-69

Photosynthesis and Photobiology Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1016/j.cell.2012.10.048DOI Listing
December 2012

Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice.

Plant Physiol 2012 Aug 25;159(4):1624-33. Epub 2012 Jun 25.

Institute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan.

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http://dx.doi.org/10.1104/pp.112.199778DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3425201PMC
August 2012

Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions.

Plant J 2012 Jan 25;69(1):126-40. Epub 2011 Oct 25.

Genome Resource Unit, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1111/j.1365-313X.2011.04777.xDOI Listing
January 2012

Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains.

Proc Natl Acad Sci U S A 2011 Dec 12;108(52):20959-64. Epub 2011 Dec 12.

Biotechnology Research Center and Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.

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http://dx.doi.org/10.1073/pnas.1116531109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248505PMC
December 2011

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions.

Nucleic Acids Res 2011 Jan 2;39(Database issue):D1141-8. Epub 2010 Nov 2.

Genome Resource Center, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkq1085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013682PMC
January 2011

A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection.

J Plant Res 2010 Nov 11;123(6):807-13. Epub 2010 Mar 11.

Graduate School of Agricultural and Life Sciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657, Japan.

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http://link.springer.com/10.1007/s10265-010-0319-4
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http://dx.doi.org/10.1007/s10265-010-0319-4DOI Listing
November 2010

Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells.

Plant Cell Physiol 2009 Nov 6;50(11):1933-49. Epub 2009 Oct 6.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

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https://academic.oup.com/pcp/article-lookup/doi/10.1093/pcp/
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http://dx.doi.org/10.1093/pcp/pcp138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775961PMC
November 2009

Genome-wide validation of Magnaporthe grisea gene structures based on transcription evidence.

FEBS Lett 2009 Feb 30;583(4):797-800. Epub 2009 Jan 30.

National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1016/j.febslet.2009.01.041DOI Listing
February 2009

A bacterial-type ABC transporter is involved in aluminum tolerance in rice.

Plant Cell 2009 Feb 24;21(2):655-67. Epub 2009 Feb 24.

Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.

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http://www.plantcell.org/cgi/doi/10.1105/tpc.108.064543
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http://dx.doi.org/10.1105/tpc.108.064543DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660611PMC
February 2009

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Characterization of an elicitor-induced rice WRKY gene, OsWRKY71.

Biosci Biotechnol Biochem 2008 Jan 7;72(1):240-5. Epub 2008 Jan 7.

Biotechnology Research Center, The University of Tokyo, Yayoi, Tokyo, Japan.

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http://dx.doi.org/10.1271/bbb.70553DOI Listing
January 2008

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.

Nucleic Acids Res 2006 Jan;34(Database issue):D741-4

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gkj094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347456PMC
January 2006

From mapping to sequencing, post-sequencing and beyond.

Plant Cell Physiol 2005 Jan 19;46(1):3-13. Epub 2005 Jan 19.

National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

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http://academic.oup.com/pcp/article/46/1/3/1815112/From-Mapp
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http://dx.doi.org/10.1093/pcp/pci503DOI Listing
January 2005

[Bioinformatics for breeding].

Tanpakushitsu Kakusan Koso 2004 Feb;49(2):175-80

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February 2004