Publications by authors named "Yiping He"

88Publications

Comparative Methylome Analysis of Strain YH002 Reveals a Putative Novel Motif and Diverse Epigenetic Regulations of Virulence Genes.

Front Microbiol 2020 23;11:610395. Epub 2020 Dec 23.

Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service, United States Department of Agriculture, Wyndmoor, PA, United States.

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December 2020

Immunohistochemical analysis of HNF4A and β-catenin expression to predict low-grade dysplasia in the colitis-neoplastic sequence.

Acta Biochim Biophys Sin (Shanghai) 2021 Jan;53(1):94-101

Department of Gastroenterology, Ruijin Hospital, Shanghai Jiao Tong University of Medicine, Shanghai 200025, China.

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January 2021

Perioperative Circulating Tumor DNA in Colorectal Liver Metastases: Concordance with Metastatic Tissue and Predictive Value for Tumor Burden and Prognosis.

Cancer Manag Res 2020 4;12:1621-1630. Epub 2020 Mar 4.

Department of Colorectal Surgery, Fudan University Shanghai Cancer Center, Shanghai 200032, People's Republic of China.

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March 2020

Comparative Genomic Analysis of a Multidrug-Resistant Strain YH002 Isolated from Retail Beef Liver.

Foodborne Pathog Dis 2020 Sep 20;17(9):576-584. Epub 2020 Feb 20.

Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service, United States Department of Agriculture, Wyndmoor, Pennsylvania.

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September 2020

Complete Genome Sequence and Annotation of Campylobacter jejuni YH003, Isolated from Retail Chicken.

Microbiol Resour Announc 2020 Jan 23;9(4). Epub 2020 Jan 23.

Molecular Characterization of Foodborne Pathogens Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, USA.

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January 2020

Impacts of Clarification Techniques on Sample Constituents and Pathogen Retention.

Foods 2019 Dec 3;8(12). Epub 2019 Dec 3.

United States Department of Agriculture, Agriculture Research Service, Eastern Regional Research Center, 600 East Mermaid Lane, Wyndmoor, PA 19038, USA.

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December 2019

A PRMT5-RNF168-SMURF2 Axis Controls H2AX Proteostasis.

Cell Rep 2019 09;28(12):3199-3211.e5

The Preston Robert Tisch Brain Tumor Center, Duke University Medical Center, Durham, NC 27710, USA; Department of Pathology, Duke University Medical Center, Durham, NC 27710, USA. Electronic address:

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September 2019

Pulsed-Field Gel Electrophoresis Typing of Staphylococcus aureus Strains.

Authors:
Yiping He Sue Reed

Methods Mol Biol 2020 ;2069:79-88

Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service, United States Department of Agriculture§, Wyndmoor, PA, USA.

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December 2020

Gene signature associated with neuro-endocrine activity predicting prognosis of pancreatic carcinoma.

Mol Genet Genomic Med 2019 07 17;7(7):e00729. Epub 2019 May 17.

Department of Endoscopy, Fudan University Shanghai Cancer Center, Shanghai, China.

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July 2019

Identification of key pathways and candidate genes in pancreatic ductal adenocarcinoma using bioinformatics analysis.

Oncol Lett 2019 Apr 14;17(4):3751-3764. Epub 2019 Feb 14.

Department of Hepatobiliary Surgery, The Second Affiliated Hospital of Chongqing Medical University, Chongqing 400010, P.R. China.

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April 2019

A Comprehensive Multilocus Sequence Typing Scheme for Identification and Genotyping of Strains.

Foodborne Pathog Dis 2019 05 24;16(5):331-338. Epub 2019 Jan 24.

1 Shanghai Institute for Food and Drug Control, Shanghai, China.

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May 2019

Sensitive and rapid detection of TERT promoter and IDH mutations in diffuse gliomas.

Neuro Oncol 2019 03;21(4):440-450

The Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Durham, North Carolina, USA.

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March 2019

Whole-genome sequence data and analysis of a strain SJTUF_J27 isolated from seaweed.

Data Brief 2018 Oct 30;20:894-898. Epub 2018 Aug 30.

Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service (ARS), United States Department of Agriculture (USDA), 600 East Mermaid Lane, Wyndmoor, PA 19038, USA.

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October 2018

Simple Vascular Architecture Classification in Predicting Pancreatic Neuroendocrine Tumor Grade and Prognosis.

Dig Dis Sci 2018 11 18;63(11):3147-3152. Epub 2018 Aug 18.

Department of Endoscopy, Fudan University Shanghai Cancer Center, Shanghai, 200032, China.

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November 2018

Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation.

Cancer Res 2017 11 22;77(22):6097-6108. Epub 2017 Sep 22.

Department of Pathology and the Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Durham, North Carolina.

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November 2017

Whole genome sequencing and analysis of YH502 from retail chicken reveals a plasmid-borne type VI secretion system.

Genom Data 2017 Mar 6;11:128-131. Epub 2017 Feb 6.

Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service, United States Department of Agriculture, 600 East Mermaid Lane, Wyndmoor, PA 19038, USA.

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March 2017

Mutant IDH1 Disrupts the Mouse Subventricular Zone and Alters Brain Tumor Progression.

Mol Cancer Res 2017 05 1;15(5):507-520. Epub 2017 Feb 1.

The Preston Robert Tisch Brain Tumor Center at Duke, Department of Pathology, Duke University Medical Center, Durham, North Carolina.

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May 2017

Molecular Signature to Risk-Stratify Prostate Cancer of Intermediate Risk.

Clin Cancer Res 2017 Jan 1;23(1):6-8. Epub 2016 Nov 1.

Department of Pathology, Duke University School of Medicine, Durham, North Carolina.

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January 2017

The Characteristics and Prognostic Effect of E-Cadherin Expression in Colorectal Signet Ring Cell Carcinoma.

PLoS One 2016 10;11(8):e0160527. Epub 2016 Aug 10.

Department of Colorectal Surgery, Fudan University Shanghai Cancer Center, Shanghai, P. R. China.

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August 2017

Alternative Splicing Provides a Novel Molecular Mechanism for Prostatic Small-cell Neuroendocrine Carcinoma.

Eur Urol 2017 01 29;71(1):79-80. Epub 2016 Jul 29.

Department of Pathology, Duke University School of Medicine, Durham, NC, USA. Electronic address:

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January 2017

Study on the mechanism of antibacterial action of magnesium oxide nanoparticles against foodborne pathogens.

J Nanobiotechnology 2016 Jun 27;14(1):54. Epub 2016 Jun 27.

Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service, United States Department of Agriculture, 600 East Mermaid Lane, Wyndmoor, PA, 19038, USA.

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June 2016

Antibody Microarray for E. coli O157:H7 and Shiga Toxin in Microtiter Plates.

Sensors (Basel) 2015 Dec 4;15(12):30429-42. Epub 2015 Dec 4.

Molecular Characterization of Foodborne Pathogens Research Unit, United States Department of Agriculture-Northeast Area, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, PA 19038, USA.

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December 2015

Prevalence of deleterious ATM germline mutations in gastric cancer patients.

Oncotarget 2015 Dec;6(38):40953-8

State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China.

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December 2015

Complete Genome Sequence of Campylobacter jejuni YH001 from Beef Liver, Which Contains a Novel Plasmid.

Genome Announc 2015 Feb 5;3(1). Epub 2015 Feb 5.

Molecular Characterization of Foodborne Pathogens Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center (USDA-ARS-ERRC), Wyndmoor, Pennsylvania, USA.

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February 2015

[Comparison of the effect of different diagnostic criteria of subclinical hypothyroidism and positive TPO-Ab on pregnancy outcomes].

Zhonghua Fu Chan Ke Za Zhi 2014 Nov;49(11):824-8

Department of Obstetrics, Child and Maternity Health Hospital of Shannxi Province, Xi'an 710003, China. Email:

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November 2014

Rapid identification and classification of Campylobacter spp. using laser optical scattering technology.

Food Microbiol 2015 May 15;47:28-35. Epub 2014 Nov 15.

Molecular Characterization of Foodborne Pathogens Research Unit, US Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center (USDA-ARS-ERRC), 600 East Mermaid Lane, Wyndmoor, PA 19038, USA.

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May 2015

The near-quantitative sampling of genomic DNA from various food-borne Eubacteria.

BMC Microbiol 2014 Dec 31;14:326. Epub 2014 Dec 31.

Agricultural Research Service, U. S. Department of Agriculture, Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, 600 East Mermaid Lane, Wyndmoor, PA, 19038, USA.

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December 2014

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma.

PLoS One 2014 8;9(9):e107156. Epub 2014 Sep 8.

Department of Pathology, The Pediatric Brain Tumor Foundation Institute, and The Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Durham, North Carolina, United States of America.

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January 2016

Exome sequencing identifies somatic gain-of-function PPM1D mutations in brainstem gliomas.

Nat Genet 2014 Jul 1;46(7):726-30. Epub 2014 Jun 1.

Department of Pathology, Duke University Medical Center, The Preston Robert Tisch Brain Tumor Center, The Pediatric Brain Tumor Foundation Institute, Durham, North Carolina, USA.

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July 2014

Impact of inconclusive endoscopic ultrasound-guided fine-needle aspiration results in the management and outcome of patients with solid pancreatic masses.

Dig Endosc 2015 Jan 30;27(1):130-6. Epub 2014 Oct 30.

Department of Endoscopy, Fudan University Shanghai Cancer Center, Fudan University, Shanghai, China; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.

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January 2015

KMT2D maintains neoplastic cell proliferation and global histone H3 lysine 4 monomethylation.

Oncotarget 2013 Nov;4(11):2144-53

The Preston Robert Tisch Brain Tumor Center at Duke and Pediatric Brain Tumor Foundation Institute, Duke University, Durham, NC.

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November 2013

The genetic landscape of anaplastic astrocytoma.

Oncotarget 2014 Mar;5(6):1452-7

Department of Pathology, Duke University Medical Center, The Preston Robert Tisch Brain Tumor Center at Duke, and Pediatric Brain Tumor Foundation Institute at Duke, Durham, NC.

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March 2014

Pulsed-field gel electrophoresis typing of Staphylococcus aureus isolates.

Methods Mol Biol 2014 ;1085:103-11

Molecular Characterization of Foodborne Pathogens Research Unit, US Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, PA, USA.

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April 2014

Non-stochastic sampling error in quantal analyses for Campylobacter species on poultry products.

Anal Bioanal Chem 2013 Mar 5;405(7):2353-69. Epub 2013 Feb 5.

Eastern Regional Research Center, Agricultural Research Service, Molecular Characterization of Foodborne Pathogens Research Unit, United States Department of Agriculture, 600 E. Mermaid Lane, Wyndmoor, PA 19038, USA.

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March 2013

Disruption of wild-type IDH1 suppresses D-2-hydroxyglutarate production in IDH1-mutated gliomas.

Cancer Res 2013 Jan 30;73(2):496-501. Epub 2012 Nov 30.

The Preston Robert Tisch Brain Tumor Center, The Pediatric Brain Tumor Foundation Institute, and The Department of Pathology, Duke University Medical Center, Durham, North Carolina 27710, USA.

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January 2013

Global identification of MLL2-targeted loci reveals MLL2's role in diverse signaling pathways.

Proc Natl Acad Sci U S A 2012 Oct 8;109(43):17603-8. Epub 2012 Oct 8.

The Preston Robert Tisch Brain Tumor Center at Duke, Pediatric Brain Tumor Foundation Institute, cDepartment of Pathology, Duke University, Durham, NC 27710, USA.

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October 2012

Mutant IDH1 is required for IDH1 mutated tumor cell growth.

Oncotarget 2012 Aug;3(8):774-82

The Preston Robert Tisch Brain Tumor Center, The Pediatric Brain Tumor Foundation Institute, and The Department of Pathology, Duke University Medical Center, Durham, North Carolina, USA.

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August 2012

Aberrant Otx2 expression enhances migration and induces ectopic proliferation of hindbrain neuronal progenitor cells.

PLoS One 2012 27;7(4):e36211. Epub 2012 Apr 27.

Department of Pathology, The Pediatric Brain Tumor Foundation Institute, and The Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Durham, North Carolina, USA.

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September 2012

Genotypes and toxin gene profiles of Staphylococcus aureus clinical isolates from China.

PLoS One 2011 15;6(12):e28276. Epub 2011 Dec 15.

School of Agriculture and Biology, Bor Luh Food Safety Center, Shanghai Jiao Tong University, Shanghai, China.

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August 2012

Effects of polyphosphate additives on the pH of processed chicken exudates and the survival of Campylobacter.

J Food Prot 2011 Oct;74(10):1735-40

U.S. Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Molecular Characterization of Foodborne Pathogens Research Unit, Wyndmoor, Pennsylvania 19038, USA.

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October 2011

Electrical detection of dsDNA and polymerase chain reaction amplification.

Biomed Microdevices 2011 Dec;13(6):973-82

Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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December 2011

Antibacterial activity and mechanism of action of zinc oxide nanoparticles against Campylobacter jejuni.

Appl Environ Microbiol 2011 Apr 4;77(7):2325-31. Epub 2011 Feb 4.

Joint Sino-U.S. Food Safety Research Center & Bor Luh Food Safety Center, School of Agriculture & Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, China 200240.

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April 2011

Profiling the effects of isocitrate dehydrogenase 1 and 2 mutations on the cellular metabolome.

Proc Natl Acad Sci U S A 2011 Feb 2;108(8):3270-5. Epub 2011 Feb 2.

The Preston Robert Tisch Brain Tumor Center at Duke, Pediatric Brain Tumor Foundation Institute, Duke University Medical Center, Durham, NC 27710, USA.

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February 2011

Antimicrobial activity of spherical silver nanoparticles prepared using a biocompatible macromolecular capping agent: evidence for induction of a greatly prolonged bacterial lag phase.

J Nanobiotechnology 2010 Dec 21;8:34. Epub 2010 Dec 21.

Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service, U, S, Department of Agriculture, 600 East Mermaid Lane, Wyndmoor, PA 19038 USA.

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December 2010

Quantitative analysis of viable, stressed and dead cells of Campylobacter jejuni strain 81-176.

Food Microbiol 2010 Jun 2;27(4):439-46. Epub 2009 Dec 2.

Microbial Biophysics and Residue Chemistry Research Unit, U. S. Department of Agriculture, 600 E. Mermaid Lane, Wyndmoor, PA 19038, USA.

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June 2010

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells.

Nature 2010 Mar 3;464(7288):610-4. Epub 2010 Mar 3.

The Ludwig Center for Cancer Genetics and Therapeutics and The Howard Hughes Medical Institute at The Johns Hopkins Kimmel Cancer Center, Baltimore, Maryland 21231, USA.

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March 2010

A multiplex real-time polymerase chain reaction for simultaneous detection of Salmonella spp., Escherichia coli O157, and Listeria monocytogenes in meat products.

Foodborne Pathog Dis 2010 Jun;7(6):619-28

Joint Sino-U.S. Food Safety Research Center and Bor Luh Food Safety Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.

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June 2010

Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens.

Mol Cell Probes 2010 Apr 13;24(2):77-86. Epub 2009 Oct 13.

Joint Sino-US Food Safety Research Center & Bor Luh Food Safety Center, School of Agriculture & Biology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai 200240, China.

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April 2010

Sensitive digital quantification of DNA methylation in clinical samples.

Nat Biotechnol 2009 Sep 16;27(9):858-63. Epub 2009 Aug 16.

The Ludwig Center for Cancer Genetics and Therapeutics, Howard Hughes Medical Institute and Sidney Kimmel Cancer Center at the Johns Hopkins Medical Institutions, Baltimore, Maryland, USA.

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September 2009

Pre-TCR signaling inactivates Notch1 transcription by antagonizing E2A.

Genes Dev 2009 Jul;23(14):1665-76

Department of Pathology and Laboratory Medicine, Abramson Family Cancer Research Institute, Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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July 2009

Characterizing potential water quality impacts from soils treated with dust suppressants.

J Environ Qual 2009 Mar-Apr;38(2):502-12. Epub 2009 Feb 6.

Civil, Construction, and Environmental Engineering, San Diego State Univ., 5500 Campanile Dr., San Diego, CA 92182-1324, USA.

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April 2009

Capture of Escherichia coli O157:H7 Using Immunomagnetic Beads of Different Size and Antibody Conjugating Chemistry.

Sensors (Basel) 2009 29;9(2):717-30. Epub 2009 Jan 29.

United States Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, 600 East Mermaid Lane, Wyndmoor, PA 19038, USA.

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September 2012

The antisense transcriptomes of human cells.

Science 2008 Dec 4;322(5909):1855-7. Epub 2008 Dec 4.

Ludwig Center for Cancer Genetics and Therapeutics and Howard Hughes Medical Institute, Johns Hopkins Kimmel Cancer Center, Baltimore, MD 21231, USA.

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December 2008

Analysis of AI-2/LuxS-dependent transcription in Campylobacter jejuni strain 81-176.

Foodborne Pathog Dis 2008 Aug;5(4):399-415

Microbial Biophysics and Residue Chemistry Research Unit, ERRC-ARS-USDA, Wyndmoor, Pennsylvania 19038, USA.

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August 2008

Constitutive Notch signalling promotes CD4 CD8 thymocyte differentiation in the absence of the pre-TCR complex, by mimicking pre-TCR signals.

Int Immunol 2007 Dec 1;19(12):1421-30. Epub 2007 Nov 1.

Division of Cancer Sciences and Molecular Pathology, Section of Experimental Haematology, Royal Infirmary, University of Glasgow, Glasgow, UK.

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December 2007

Tribbles homolog 2 inactivates C/EBPalpha and causes acute myelogenous leukemia.

Cancer Cell 2006 Nov;10(5):401-11

Department of Pathology and Laboratory Medicine, Abramson Family Cancer Research Institute, Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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November 2006

BEAMing: single-molecule PCR on microparticles in water-in-oil emulsions.

Nat Methods 2006 Jul;3(7):551-9

The Howard Hughes Medical Institute, and The Ludwig Center for Cancer Genetics and Therapeutics, The Johns Hopkins Kimmel Cancer Center, 1650 Orleans Street, Baltimore, Maryland 21231, USA.

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July 2006

The colorectal microRNAome.

Proc Natl Acad Sci U S A 2006 Mar 27;103(10):3687-92. Epub 2006 Feb 27.

The Sidney Kimmel Comprehensive Cancer Center and Howard Hughes Medical Institute, Johns Hopkins University Medical Institutions, Baltimore, MD 21231, USA.

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March 2006

Detection and quantification of mutations in the plasma of patients with colorectal tumors.

Proc Natl Acad Sci U S A 2005 Nov 28;102(45):16368-73. Epub 2005 Oct 28.

Howard Hughes Medical Institute and The Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins Medical Institutions, 1650 Orleans Street, Baltimore, MD 21231, USA.

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November 2005

Notch signaling is a potent inducer of growth arrest and apoptosis in a wide range of B-cell malignancies.

Blood 2005 Dec 23;106(12):3898-906. Epub 2005 Aug 23.

Department of Pathology and Laboratory Medicine, University of Pennsylvania, 611 BRB II/III, 421 Curie Blvd, Philadelphia, PA 19104-6160, USA.

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December 2005

Notch 1 signaling regulates peripheral T cell activation.

Immunity 2004 Apr;20(4):407-15

Diabetes Center and Department of Medicine, University of California, San Francisco, San Francisco, CA 94143 USA.

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April 2004

From the yolk sac to the spleen: New roles for Notch in regulating hematopoiesis.

Immunity 2003 May;18(5):587-9

Division of Hematology-Oncology, Abramson Family Cancer Research Institute, University of Pennsylvania, Philadelphia 19104, USA.

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May 2003

Tyrosine mutation in CD3epsilon-ITAM blocked T lymphocyte apoptosis mediated by CD3epsilon.

Immunol Invest 2003 Feb;32(1-2):59-70

National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, PR China.

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February 2003

Notch signalling in B cells.

Semin Cell Dev Biol 2003 Apr;14(2):135-42

Department of Pathology, Institute for Medicine and Engineering, Abramson Family Cancer Research Institute, University of Pennsylvania, 611 BRB II/III, 421 Curie Boulevard, Philadelphia, PA 19104-3111, USA.

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April 2003

The biology of chronic myelogenous leukemia:mouse models and cell adhesion.

Oncogene 2002 Dec;21(56):8612-28

Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6160, USA.

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December 2002

The coiled-coil domain and Tyr177 of bcr are required to induce a murine chronic myelogenous leukemia-like disease by bcr/abl.

Blood 2002 Apr;99(8):2957-68

Department of Pathology and Laboratory Medicine, Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, USA.

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April 2002

Deltex1 redirects lymphoid progenitors to the B cell lineage by antagonizing Notch1.

Immunity 2002 Feb;16(2):231-43

Department of Pathology and Laboratory Medicine, University of Pennsylvania Medical Center, Philadelphia, PA 19104, USA.

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February 2002