Yingjia Shen

Yingjia Shen

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Yingjia Shen

Yingjia Shen

Publications by authors named "Yingjia Shen"

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28Publications

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Distinct genome-wide alternative polyadenylation during the response to silicon availability in the marine diatom Thalassiosira pseudonana.

Plant J 2019 07 1;99(1):67-80. Epub 2019 Apr 1.

School of Life Sciences, Xiamen University, Xiamen, Fujian, 361102, China.

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http://dx.doi.org/10.1111/tpj.14309DOI Listing
July 2019

Transcriptome profiling during mangrove viviparity in response to abscisic acid.

Sci Rep 2018 01 15;8(1):770. Epub 2018 Jan 15.

Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, 361102, China.

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http://www.nature.com/articles/s41598-018-19236-x
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http://dx.doi.org/10.1038/s41598-018-19236-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768736PMC
January 2018

Global transcriptomic analysis of zebrafish in response to embryonic exposure to three antidepressants, amitriptyline, fluoxetine and mianserin.

Aquat Toxicol 2017 Nov 28;192:274-283. Epub 2017 Sep 28.

School of Environmental and Chemical Engineering, Shanghai University, Shanghai 200444 China. Electronic address:

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http://dx.doi.org/10.1016/j.aquatox.2017.09.027DOI Listing
November 2017

Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination.

Plant J 2017 Sep 22;91(5):829-839. Epub 2017 Jul 22.

Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, 361102, China.

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http://dx.doi.org/10.1111/tpj.13611DOI Listing
September 2017

IRF4 Modulates CD8 T Cell Sensitivity to IL-2 Family Cytokines.

Immunohorizons 2017 Aug 14;1(6):92-100. Epub 2017 Aug 14.

Thoracic Diseases Research Unit, Division of Pulmonary and Critical Care, Department of Medicine, Mayo Clinic College of Medicine, Rochester, MN 55905.

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http://dx.doi.org/10.4049/immunohorizons.1700020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5858712PMC
August 2017

KANK1 inhibits cell growth by inducing apoptosis through regulating CXXC5 in human malignant peripheral nerve sheath tumors.

Sci Rep 2017 01 9;7:40325. Epub 2017 Jan 9.

Department of Comparative Pathobiology, Purdue University, West Lafayette, Indiana, United States.

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http://www.nature.com/articles/srep40325
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http://dx.doi.org/10.1038/srep40325DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5220314PMC
January 2017

Genome-wide dynamics of alternative polyadenylation in rice.

Genome Res 2016 12 12;26(12):1753-1760. Epub 2016 Oct 12.

Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 361102.

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http://dx.doi.org/10.1101/gr.210757.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131826PMC
December 2016

Whole Body Melanoma Transcriptome Response in Medaka.

PLoS One 2015 29;10(12):e0143057. Epub 2015 Dec 29.

McDonnell Genome Institute at Washington University, 4444 Forest Park Blvd., St Louis, MO, 63108, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143057PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4699850PMC
July 2016

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

BMC Genomics 2016 Jan 7;17:37. Epub 2016 Jan 7.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, 419 Centennial Hall, 601 University Drive, San Marcos, TX, 78666, USA.

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http://dx.doi.org/10.1186/s12864-015-2361-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705583PMC
January 2016

Novel method for analysis of allele specific expression in triploid Oryzias latipes reveals consistent pattern of allele exclusion.

PLoS One 2014 19;9(6):e100250. Epub 2014 Jun 19.

Department of Chemistry and Biochemistry, Molecular Biosciences Research Group, Texas State University, San Marcos, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100250PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063754PMC
March 2015

UVB-induced gene expression in the skin of Xiphophorus maculatus Jp 163 B.

Comp Biochem Physiol C Toxicol Pharmacol 2014 Jun 17;163:86-94. Epub 2014 Feb 17.

Molecular Biosciences Research Group, Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX, United States. Electronic address:

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http://dx.doi.org/10.1016/j.cbpc.2014.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4067948PMC
June 2014

Transcriptomic analysis of cultured whale skin cells exposed to hexavalent chromium [Cr(VI)].

Aquat Toxicol 2013 Jun 20;134-135:74-81. Epub 2013 Mar 20.

Molecular Biosciences Research Group, Department of Chemistry & Biochemistry, 419 Centennial Hall, Texas State University, 601 University Drive, San Marcos, TX 78666, USA.

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http://dx.doi.org/10.1016/j.aquatox.2013.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739694PMC
June 2013

Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources.

Comp Biochem Physiol Part D Genomics Proteomics 2013 Mar 9;8(1):11-6. Epub 2012 Nov 9.

Department of Chemistry and Biochemistry, Molecular Biosciences Research Group, Texas State University, San Marcos, TX 78666, USA.

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http://dx.doi.org/10.1016/j.cbd.2012.10.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746558PMC
March 2013

RNA-Seq reveals complex genetic response to Deepwater Horizon oil release in Fundulus grandis.

BMC Genomics 2012 Sep 12;13:474. Epub 2012 Sep 12.

Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX 78666-4616, USA.

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http://dx.doi.org/10.1186/1471-2164-13-474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3487974PMC
September 2012

Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids.

Comp Biochem Physiol C Toxicol Pharmacol 2012 Jan 3;155(1):102-8. Epub 2011 Apr 3.

Department of Chemistry and Biochemistry, 419 Centennial Hall, Texas State University, 601 University Drive, San Marcos, TX 78666, USA.

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http://dx.doi.org/10.1016/j.cbpc.2011.03.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178741PMC
January 2012

Characterization of telomeres and telomerase expression in Xiphophorus.

Comp Biochem Physiol C Toxicol Pharmacol 2012 Jan 18;155(1):89-94. Epub 2011 May 18.

Department of Chemistry and Biochemistry, Molecular Biosciences Research Group, 419 Centennial Hall, Texas State University, 601 University Drive, San Marcos, TX 78666, USA.

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http://dx.doi.org/10.1016/j.cbpc.2011.05.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3208803PMC
January 2012

A classification-based prediction model of messenger RNA polyadenylation sites.

J Theor Biol 2010 Aug 26;265(3):287-96. Epub 2010 May 26.

Department of Automation, Xiamen University, Xiamen 361000, China.

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http://dx.doi.org/10.1016/j.jtbi.2010.05.015DOI Listing
August 2010

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation.

Nucleic Acids Res 2008 May 13;36(9):3150-61. Epub 2008 Apr 13.

Department of Botany, Miami University, Oxford, OH 45056, USA.

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http://dx.doi.org/10.1093/nar/gkn158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2396415PMC
May 2008