Yeisoo Yu

Yeisoo Yu

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Yeisoo Yu

Yeisoo Yu

Publications by authors named "Yeisoo Yu"

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64Publications

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Re-exploration of U's Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences.

Sci Rep 2018 05 9;8(1):7353. Epub 2018 May 9.

Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.

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http://dx.doi.org/10.1038/s41598-018-25585-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943242PMC
May 2018

The complete chloroplast genomes of two Wisteria species, W. floribunda and W. sinensis (Fabaceae).

Mitochondrial DNA A DNA Mapp Seq Anal 2016 11 14;27(6):4353-4354. Epub 2015 Oct 14.

b Department of Plant Science , Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University , Seoul , Republic of Korea , and.

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http://dx.doi.org/10.3109/19401736.2015.1089497DOI Listing
November 2016

Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences.

Bioinformatics 2016 10 17;32(20):3058-3064. Epub 2016 Jun 17.

Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA International Rice Research Institute, Genetic Resource Center, Los Baños, Laguna, Philippines.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048067PMC
http://dx.doi.org/10.1093/bioinformatics/btw370DOI Listing
October 2016

DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements.

Genome Biol 2016 05 6;17(1):92. Epub 2016 May 6.

Department of Biological Sciences, Wayne State University, 5047 Gullen Mall, Detroit, MI, 48202, USA.

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http://dx.doi.org/10.1186/s13059-016-0954-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858842PMC
May 2016

Genotyping-by-sequencing map permits identification of clubroot resistance QTLs and revision of the reference genome assembly in cabbage (Brassica oleracea L.).

DNA Res 2016 Feb 29;23(1):29-41. Epub 2015 Nov 29.

Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea Crop Biotechnology Institute/GreenBio Science and Technology, Seoul National University, Pyeongchang 232-916, Republic of Korea

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http://dx.doi.org/10.1093/dnares/dsv034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4755525PMC
February 2016

Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage.

BMC Plant Biol 2015 Feb 3;15:32. Epub 2015 Feb 3.

Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea.

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http://dx.doi.org/10.1186/s12870-015-0424-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4323122PMC
February 2015

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing.

BMC Genomics 2015 Jan 2;16. Epub 2015 Jan 2.

Biomodulation Major, Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea.

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http://dx.doi.org/10.1186/1471-2164-16-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326529PMC
January 2015

Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion.

Mol Plant 2014 Apr 8;7(4):642-56. Epub 2013 Nov 8.

Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1093/mp/sst149DOI Listing
April 2014

Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.

Microb Ecol 2013 Feb 9;65(2):371-83. Epub 2012 Dec 9.

Department of Soil, Water and Environmental Science, University of Arizona, Tucson, AZ 85721-0038, USA.

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http://dx.doi.org/10.1007/s00248-012-0143-6DOI Listing
February 2013

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.

Plant J 2010 Aug 6;63(3):430-42. Epub 2010 May 6.

Arizona Genomics Institute, School of Plant Sciences, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USABiodiversity Synthesis Center, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USADepartment of Genetics, University of Georgia, Athens, GA 30602-7223, USAState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, ChinaDepartment of Agronomy, Purdue University, West Lafayette, IN 47907-2054, USADepartment of Horticulture, Michigan State University, East Lansing, MI 48823, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2010.04251.xDOI Listing
August 2010

Genomic structure and evolution of the Pi2/9 locus in wild rice species.

Theor Appl Genet 2010 Jul 14;121(2):295-309. Epub 2010 Mar 14.

Hunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, Hunan Agricultural University, Changsha, China.

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http://dx.doi.org/10.1007/s00122-010-1310-0DOI Listing
July 2010

A lineage-specific centromere retrotransposon in Oryza brachyantha.

Plant J 2009 Dec 21;60(5):820-31. Epub 2009 Aug 21.

Molecular and Evolutionary Genetics, Purdue University, 915 W. State Street, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2009.04005.xDOI Listing
December 2009

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors.

Proc Natl Acad Sci U S A 2009 Jun 18;106(22):9063-8. Epub 2009 May 18.

Department of Ecology and Evolutionary Biology, Arizona Genomics Institute, University of Arizona, Tucson, AZ 85721. USA.

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http://dx.doi.org/10.1073/pnas.0900194106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2690004PMC
June 2009

Human gut microbiota in obesity and after gastric bypass.

Proc Natl Acad Sci U S A 2009 Feb 21;106(7):2365-70. Epub 2009 Jan 21.

Center for Environmental Biotechnology, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.

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http://dx.doi.org/10.1073/pnas.0812600106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629490PMC
February 2009

The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice.

Mol Plant 2008 Sep 22;1(5):839-50. Epub 2008 Aug 22.

Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S167420521460360
Publisher Site
http://dx.doi.org/10.1093/mp/ssn050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902912PMC
September 2008

A phylogenetic analysis of indel dynamics in the cotton genus.

Mol Biol Evol 2008 Jul 9;25(7):1415-28. Epub 2008 Apr 9.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Iowa, USA.

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http://dx.doi.org/10.1093/molbev/msn085DOI Listing
July 2008

Transposable element distribution, abundance and role in genome size variation in the genus Oryza.

BMC Evol Biol 2007 Aug 29;7:152. Epub 2007 Aug 29.

Arizona Genomics Institute, Department of Plant Sciences, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1186/1471-2148-7-152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2041954PMC
August 2007

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions.

Theor Appl Genet 2005 Aug 18;111(3):467-78. Epub 2005 Jun 18.

Brassica Genomics Team, National Institute of Agricultural Biotechnology, RDA, Suwon, 441-707, Korea.

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http://dx.doi.org/10.1007/s00122-005-2034-4DOI Listing
August 2005

In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons.

Chromosoma 2005 Jul 17;114(2):103-17. Epub 2005 Jun 17.

Brassica Genomics Team, National Institute of Agricultural Biotechnology, RDA, Suwon 441-707, South Korea.

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http://dx.doi.org/10.1007/s00412-005-0342-8DOI Listing
July 2005

Sequence composition and genome organization of maize.

Proc Natl Acad Sci U S A 2004 Oct 23;101(40):14349-54. Epub 2004 Sep 23.

Plant Genome Initiative at Rutgers, Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1073/pnas.0406163101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC521949PMC
October 2004

Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing.

Theor Appl Genet 2003 Aug 3;107(4):652-60. Epub 2003 Jun 3.

Arizona Genomics Institute, Department of Plant Sciences, 303 Forbes Building, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1007/s00122-003-1302-4DOI Listing
August 2003