Yasuyoshi Sakai

Yasuyoshi Sakai

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Yasuyoshi Sakai

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Methanol production by reversed methylotrophy constructed in .

Authors:
Tomoyuki Takeya Miyabi Yamakita Daisuke Hayashi Kento Fujisawa Yasuyoshi Sakai Hiroya Yurimoto

Biosci Biotechnol Biochem 2020 Jan 16:1-7. Epub 2020 Jan 16.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.1080/09168451.2020.1715202DOI Listing
January 2020

Community composition and methane oxidation activity of methanotrophs associated with duckweeds in a fresh water lake.

Authors:
Hiroyuki Iguchi Ryohei Umeda Hiroki Taga Tokitaka Oyama Hiroya Yurimoto Yasuyoshi Sakai

J Biosci Bioeng 2019 Oct 16;128(4):450-455. Epub 2019 May 16.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1016/j.jbiosc.2019.04.009DOI Listing
October 2019

Engineering the expression system for Komagataella phaffii (Pichia pastoris): an attempt to develop a methanol-free expression system.

Authors:
Shinobu Takagi Noriko Tsutsumi Yuji Terui XiangYu Kong Hiroya Yurimoto Yasuyoshi Sakai

FEMS Yeast Res 2019 Sep;19(6)

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1093/femsyr/foz059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736287PMC
September 2019

Peroxisomal Fba2p and Tal2p complementally function in the rearrangement pathway for xylulose 5-phosphate in the methylotrophic yeast Pichia pastoris.

Authors:
Hirotaka Fukuoka Takato Kawase Masahide Oku Hiroya Yurimoto Yasuyoshi Sakai Takashi Hayakawa Tomoyuki Nakagawa

J Biosci Bioeng 2019 Jul 30;128(1):33-38. Epub 2019 Jan 30.

Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jbiosc.2019.01.008DOI Listing
July 2019

Methylotrophic Yeasts: Current Understanding of Their C1-Metabolism and its Regulation by Sensing Methanol for Survival on Plant Leaves.

Authors:
Hiroya Yurimoto Yasuyoshi Sakai

Curr Issues Mol Biol 2019 Jun 5;33:197-210. Epub 2019 Jun 5.

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http://dx.doi.org/10.21775/cimb.033.197DOI Listing
June 2019

Evolution from covalent conjugation to non-covalent interaction in the ubiquitin-like ATG12 system.

Authors:
Yu Pang Hayashi Yamamoto Hirokazu Sakamoto Masahide Oku Joe Kimanthi Mutungi Mayurbhai Himatbhai Sahani Yoshitaka Kurikawa Kiyoshi Kita Nobuo N Noda Yasuyoshi Sakai Honglin Jia Noboru Mizushima

Nat Struct Mol Biol 2019 04 25;26(4):289-296. Epub 2019 Mar 25.

Department of Biochemistry and Molecular Biology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1038/s41594-019-0204-3DOI Listing
April 2019

Pantothenate auxotrophy of Methylobacterium spp. isolated from living plants.

Authors:
Yusuke Yoshida Hiroyuki Iguchi Yasuyoshi Sakai Hiroya Yurimoto

Biosci Biotechnol Biochem 2019 Mar 26;83(3):569-577. Epub 2018 Nov 26.

a Division of Applied Life Sciences, Graduate School of Agriculture , Kyoto University , Kyoto , Japan.

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http://dx.doi.org/10.1080/09168451.2018.1549935DOI Listing
March 2019

KaiC family proteins integratively control temperature-dependent UV resistance in Methylobacterium extorquens AM1.

Authors:
Hiroyuki Iguchi Yusuke Yoshida Kento Fujisawa Hiroki Taga Hiroya Yurimoto Tokitaka Oyama Yasuyoshi Sakai

Environ Microbiol Rep 2018 12 17;10(6):634-643. Epub 2018 Sep 17.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, 606-8502, Japan.

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http://dx.doi.org/10.1111/1758-2229.12662DOI Listing
December 2018

Ethanol represses the expression of methanol-inducible genes via acetyl-CoA synthesis in the yeast Komagataella phaffii.

Authors:
Shin Ohsawa Susumu Nishida Masahide Oku Yasuyoshi Sakai Hiroya Yurimoto

Sci Rep 2018 12 21;8(1):18051. Epub 2018 Dec 21.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, 606-8502, Japan.

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http://www.nature.com/articles/s41598-018-36732-2
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http://dx.doi.org/10.1038/s41598-018-36732-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303403PMC
December 2018

A Pichia pastoris single-cell biosensor for detection of enzymatically produced methanol.

Authors:
Tomoyuki Takeya Hiroya Yurimoto Yasuyoshi Sakai

Appl Microbiol Biotechnol 2018 Aug 11;102(16):7017-7027. Epub 2018 Jun 11.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, 606-8502, Japan.

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http://dx.doi.org/10.1007/s00253-018-9144-9DOI Listing
August 2018

Three Distinct Types of Microautophagy Based on Membrane Dynamics and Molecular Machineries.

Authors:
Masahide Oku Yasuyoshi Sakai

Bioessays 2018 06 30;40(6):e1800008. Epub 2018 Apr 30.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, 606-8502, Japan.

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http://dx.doi.org/10.1002/bies.201800008DOI Listing
June 2018

Yeast Hog1 proteins are sequestered in stress granules during high-temperature stress.

Authors:
Kosuke Shiraishi Takahiro Hioki Akari Habata Hiroya Yurimoto Yasuyoshi Sakai

J Cell Sci 2018 01 9;131(1). Epub 2018 Jan 9.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, 606-8502, Kyoto, Japan

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http://dx.doi.org/10.1242/jcs.209114DOI Listing
January 2018

Role of Acyl Chain Composition of Phosphatidylcholine in Tafazzin-Mediated Remodeling of Cardiolipin in Liposomes.

Authors:
Masato Abe Yoshiki Sawada Shinpei Uno Shuhei Chigasaki Masahide Oku Yasuyoshi Sakai Hideto Miyoshi

Biochemistry 2017 11 9;56(47):6268-6280. Epub 2017 Nov 9.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University , Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1021/acs.biochem.7b00941DOI Listing
November 2017

Evidence for ESCRT- and clathrin-dependent microautophagy.

Authors:
Masahide Oku Yuichiro Maeda Yoko Kagohashi Takeshi Kondo Mai Yamada Toyoshi Fujimoto Yasuyoshi Sakai

J Cell Biol 2017 10 24;216(10):3263-3274. Epub 2017 Aug 24.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan

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http://dx.doi.org/10.1083/jcb.201611029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626533PMC
October 2017

Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems.

Authors:
Katharina Frindte Marina G Kalyuzhnaya Françoise Bringel Peter F Dunfield Mike S M Jetten Valentina N Khmelenina Martin G Klotz J Colin Murrell Huub J M Op den Camp Yasuyoshi Sakai Jeremy D Semrau Nicole Shapiro Alan A DiSpirito Lisa Y Stein Mette M Svenning Yuri A Trotsenko Stéphane Vuilleumier Tanja Woyke Claudia Knief

Genome Announc 2017 Aug 17;5(33). Epub 2017 Aug 17.

Institute of Crop Science and Resource Conservation-Molecular Biology of the Rhizosphere, University of Bonn, Bonn, Germany

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http://dx.doi.org/10.1128/genomeA.00526-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5604758PMC
August 2017

Experimental Systems to Study Yeast Pexophagy.

Authors:
Shun-Ichi Yamashita Masahide Oku Yasuyoshi Sakai Yukio Fujiki

Methods Mol Biol 2017 ;1595:249-255

Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-8582, Japan.

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http://link.springer.com/10.1007/978-1-4939-6937-1_24
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http://dx.doi.org/10.1007/978-1-4939-6937-1_24DOI Listing
May 2017

Synthesized Aβ42 Caused Intracellular Oxidative Damage, Leading to Cell Death, via Lysosome Rupture.

Authors:
Yuki Oku Kazuma Murakami Kazuhiro Irie Jun Hoseki Yasuyoshi Sakai

Cell Struct Funct 2017 May 12;42(1):71-79. Epub 2017 Apr 12.

Research Unit for Physiological Chemistry, Kyoto University.

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http://dx.doi.org/10.1247/csf.17006DOI Listing
May 2017

Autophagy-independent function of Atg8 in lipid droplet dynamics in yeast.

Authors:
Yuichiro Maeda Masahide Oku Yasuyoshi Sakai

J Biochem 2017 Apr;161(4):339-348

Division of Applied Life Sciences, Graduate School of Agriculture.

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http://dx.doi.org/10.1093/jb/mvw078DOI Listing
April 2017

Novel function of Wsc proteins as a methanol-sensing machinery in the yeast Pichia pastoris.

Authors:
Shin Ohsawa Hiroya Yurimoto Yasuyoshi Sakai

Mol Microbiol 2017 04 21;104(2):349-363. Epub 2017 Feb 21.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, 606-8502, Japan.

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http://dx.doi.org/10.1111/mmi.13631DOI Listing
April 2017

Development of a stable ERroGFP variant suitable for monitoring redox dynamics in the ER.

Authors:
Jun Hoseki Asami Oishi Takaaki Fujimura Yasuyoshi Sakai

Biosci Rep 2016 15;36(2). Epub 2016 Apr 15.

Research Unit for Physiological Chemistry, the Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1042/BSR20160027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4832336PMC
December 2016

Screening of dietary antioxidants against mitochondria-mediated oxidative stress by visualization of intracellular redox state.

Authors:
Sunita Maharjan Yasuyoshi Sakai Jun Hoseki

Biosci Biotechnol Biochem 2016 14;80(4):726-34. Epub 2016 Jan 14.

b Research Unit for Physiological Chemistry , The Center for the Promotion of Interdisciplinary Education and Research, Kyoto University , Kyoto , Japan.

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http://dx.doi.org/10.1080/09168451.2015.1123607DOI Listing
December 2016

Mitochondrial division occurs concurrently with autophagosome formation but independently of Drp1 during mitophagy.

Authors:
Shun-Ichi Yamashita Xiulian Jin Kentaro Furukawa Maho Hamasaki Akiko Nezu Hidenori Otera Tetsu Saigusa Tamotsu Yoshimori Yasuyoshi Sakai Katsuyoshi Mihara Tomotake Kanki

J Cell Biol 2016 Dec 30;215(5):649-665. Epub 2016 Nov 30.

Department of Cellular Physiology, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan

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http://dx.doi.org/10.1083/jcb.201605093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5147001PMC
December 2016

Mechanism for Remodeling of the Acyl Chain Composition of Cardiolipin Catalyzed by Saccharomyces cerevisiae Tafazzin.

Authors:
Masato Abe Yui Hasegawa Masahide Oku Yoshiki Sawada Eriko Tanaka Yasuyoshi Sakai Hideto Miyoshi

J Biol Chem 2016 07 6;291(30):15491-502. Epub 2016 Jun 6.

From the Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan

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http://dx.doi.org/10.1074/jbc.M116.718510DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4957036PMC
July 2016

A defect of the vacuolar putative lipase Atg15 accelerates degradation of lipid droplets through lipolysis.

Authors:
Yuichiro Maeda Masahide Oku Yasuyoshi Sakai

Autophagy 2015 ;11(8):1247-58

a Division of Applied Life Sciences; Graduate School of Agriculture; Research Unit for Physiological Chemistry; Center for the Promotion of Interdisciplinary Education and Research; Kyoto University; Kitashirakawa-Oiwake ; Sakyo , Kyoto Japan.

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http://dx.doi.org/10.1080/15548627.2015.1056969DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4590595PMC
June 2016

Pexophagy in yeasts.

Authors:
Masahide Oku Yasuyoshi Sakai

Biochim Biophys Acta 2016 May 26;1863(5):992-8. Epub 2015 Sep 26.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Japan; Research Unit for Physiological Chemistry, the Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbamcr.2015.09.023DOI Listing
May 2016

Unique C-terminal region of Hap3 is required for methanol-regulated gene expression in the methylotrophic yeast Candida boidinii.

Authors:
Saori Oda Hiroya Yurimoto Nobuhisa Nitta Yasuyoshi Sakai

Microbiology 2016 05 10;162(5):898-907. Epub 2016 Mar 10.

Research Unit for Physiological Chemistry, Center for the Promotion of Interdisciplinary Education and Research, Kyoto University,Kyoto,Japan.

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http://dx.doi.org/10.1099/mic.0.000275DOI Listing
May 2016

Roseomonas elaeocarpi sp. nov., isolated from olive (Elaeocarpus hygrophilus Kurz.) phyllosphere.

Authors:
Jenjira Damtab Pumin Nutaratat Wanatchaporn Boontham Nantana Srisuk Kannika Duangmal Hiroya Yurimoto Yasuyoshi Sakai Yuki Muramatsu Yasuyoshi Nakagawa

Int J Syst Evol Microbiol 2016 Jan 6;66(1):474-480. Epub 2015 Nov 6.

Biological Resource Center (NBRC), National Institute of Technology and Evaluation, 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan.

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http://dx.doi.org/10.1099/ijsem.0.000748DOI Listing
January 2016

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems.

Authors:
James D Flynn Hisako Hirayama Yasuyoshi Sakai Peter F Dunfield Martin G Klotz Claudia Knief Huub J M Op den Camp Mike S M Jetten Valentina N Khmelenina Yuri A Trotsenko J Colin Murrell Jeremy D Semrau Mette M Svenning Lisa Y Stein Nikos Kyrpides Nicole Shapiro Tanja Woyke Françoise Bringel Stéphane Vuilleumier Alan A DiSpirito Marina G Kalyuzhnaya

Genome Announc 2016 Jan 21;4(1). Epub 2016 Jan 21.

San Diego State University, Department of Biology, San Diego, California, USA

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http://dx.doi.org/10.1128/genomeA.01629-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722281PMC
January 2016

Regulation of nitrate and methylamine metabolism by multiple nitrogen sources in the methylotrophic yeast Candida boidinii.

Authors:
Kosuke Shiraishi Masahide Oku Daichi Uchida Hiroya Yurimoto Yasuyoshi Sakai

FEMS Yeast Res 2015 Nov 16;15(7). Epub 2015 Sep 16.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, Japan Research Unit for Physiological Chemistry, The Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto, Japan Advanced Low Carbon Technology Research and Development Program, Japan Science and Technology Agency, K's Gobancho, 7 Gobancho, Chiyoda-ku, Tokyo, Japan

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http://dx.doi.org/10.1093/femsyr/fov084DOI Listing
November 2015

Expression of a codon-optimized Aspergillus niger pectin methylesterase gene in the methylotrophic yeast Candida boidinii.

Authors:
Kosuke Kawaguchi Hiroya Yurimoto Yasuyoshi Sakai

Biosci Biotechnol Biochem 2014 23;78(4):718-21. Epub 2014 Apr 23.

a Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake , Sakyo-ku, Kyoto , Japan.

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http://dx.doi.org/10.1080/09168451.2014.891936DOI Listing
August 2015

Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.

Authors:
Richard Hamilton K Dimitri Kits Victoria A Ramonovskaya Olga N Rozova Hiroya Yurimoto Hiroyuki Iguchi Valentina N Khmelenina Yasuyoshi Sakai Peter F Dunfield Martin G Klotz Claudia Knief Huub J M Op den Camp Mike S M Jetten Françoise Bringel Stéphane Vuilleumier Mette M Svenning Nicole Shapiro Tanja Woyke Yuri A Trotsenko Lisa Y Stein Marina G Kalyuzhnaya

Genome Announc 2015 Jun 4;3(3). Epub 2015 Jun 4.

San Diego State University, San Diego, California, USA

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http://dx.doi.org/10.1128/genomeA.00515-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4457054PMC
June 2015

Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.

Authors:
Christine E Sharp Angela V Smirnova Marina G Kalyuzhnaya Françoise Bringel Hisako Hirayama Mike S M Jetten Valentina N Khmelenina Martin G Klotz Claudia Knief Nikos Kyrpides Huub J M Op den Camp Alexander S Reshetnikov Yasuyoshi Sakai Nicole Shapiro Yuri A Trotsenko Stéphane Vuilleumier Tanja Woyke Peter F Dunfield

Genome Announc 2015 Jun 11;3(3). Epub 2015 Jun 11.

Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada

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http://dx.doi.org/10.1128/genomeA.00644-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463540PMC
June 2015

Interactions of Methylotrophs with Plants and Other Heterotrophic Bacteria.

Authors:
Hiroyuki Iguchi Hiroya Yurimoto Yasuyoshi Sakai

Microorganisms 2015 Apr 2;3(2):137-51. Epub 2015 Apr 2.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5023238PMC
http://dx.doi.org/10.3390/microorganisms3020137DOI Listing
April 2015

Yeast nitrogen utilization in the phyllosphere during plant lifespan under regulation of autophagy.

Authors:
Kosuke Shiraishi Masahide Oku Kosuke Kawaguchi Daichi Uchida Hiroya Yurimoto Yasuyoshi Sakai

Sci Rep 2015 Apr 21;5:9719. Epub 2015 Apr 21.

1] Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan [2] Research Unit for Physiological Chemistry, The Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto, Japan [3] Advanced Low Carbon Technology Research and Development Program, Japan Science and Technology Agency, K's Gobancho, 7 Gobancho, Chiyoda-ku, Tokyo 102-0076, Japan.

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http://dx.doi.org/10.1038/srep09719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5386246PMC
April 2015

Molecular characterization of hap complex components responsible for methanol-inducible gene expression in the methylotrophic yeast Candida boidinii.

Authors:
Saori Oda Hiroya Yurimoto Nobuhisa Nitta Yu Sasano Yasuyoshi Sakai

Eukaryot Cell 2015 Mar 16;14(3):278-85. Epub 2015 Jan 16.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, Japan Research Unit for Physiological Chemistry, Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto, Japan Advanced Low Carbon Technology Research and Development Program, Japan Science and Technology Agency, Chiyoda-ku, Tokyo, Japan

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http://dx.doi.org/10.1128/EC.00285-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4346567PMC
March 2015

Tor and the Sin3-Rpd3 complex regulate expression of the mitophagy receptor protein Atg32 in yeast.

Authors:
Masamune Aihara Xiulian Jin Yusuke Kurihara Yutaka Yoshida Yuichi Matsushima Masahide Oku Yuko Hirota Tetsu Saigusa Yoshimasa Aoki Takeshi Uchiumi Tadashi Yamamoto Yasuyoshi Sakai Dongchon Kang Tomotake Kanki

J Cell Sci 2014 Jul 16;127(Pt 14):3184-96. Epub 2014 May 16.

Laboratory of Biosignaling, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan

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http://dx.doi.org/10.1242/jcs.153254DOI Listing
July 2014

Mitochondrial impairment triggers cytosolic oxidative stress and cell death following proteasome inhibition.

Authors:
Sunita Maharjan Masahide Oku Masashi Tsuda Jun Hoseki Yasuyoshi Sakai

Sci Rep 2014 Jul 31;4:5896. Epub 2014 Jul 31.

1] Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan [2] Research Unit for Physiological Chemistry, the Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1038/srep05896DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4116626PMC
July 2014

Methyloparacoccus murrellii gen. nov., sp. nov., a methanotroph isolated from pond water.

Authors:
Sven Hoefman David van der Ha Hiroyuki Iguchi Hiroya Yurimoto Yasuyoshi Sakai Nico Boon Peter Vandamme Kim Heylen Paul De Vos

Int J Syst Evol Microbiol 2014 Jun 27;64(Pt 6):2100-7. Epub 2014 Mar 27.

Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Gent, Belgium BCCM/LMG Bacteria Collection, Gent, Belgium

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http://dx.doi.org/10.1099/ijs.0.057760-0DOI Listing
June 2014

Atg21 regulates pexophagy via its PI(3)P-binding activity in Pichia pastoris.

Authors:
Naoki Tamura Masahide Oku Yasuyoshi Sakai

FEMS Yeast Res 2014 May 23;14(3):435-44. Epub 2014 Jan 23.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.1111/1567-1364.12132DOI Listing
May 2014

The emerging role of autophagy in peroxisome dynamics and lipid metabolism of phyllosphere microorganisms.

Authors:
Masahide Oku Yoshitaka Takano Yasuyoshi Sakai

Front Plant Sci 2014 11;5:81. Epub 2014 Mar 11.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University Kyoto, Japan ; Research Unit for Physiological Chemistry, Center for the Promotion of Interdisciplinary Education and Research, Kyoto University Kyoto, Japan.

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http://dx.doi.org/10.3389/fpls.2014.00081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949286PMC
April 2014

Functional link between Rab GTPase-mediated membrane trafficking and PI4,5P2 signaling.

Authors:
Cuifang Li Ayako Kita Yuuka Hashimoto Misako Ihara Ayaka Kato Naoya Ogura Akira Doi Masahide Oku Toshiki Itoh Yasuyoshi Sakai Reiko Sugiura

Genes Cells 2014 Mar 19;19(3):177-97. Epub 2013 Dec 19.

Laboratory of Molecular Pharmacogenomics, School of Pharmaceutical Sciences, Kinki University, Kowakae 3-4-1, Higashi-Osaka, 577-8502, Japan; Japan Society for the Promotion of Science, 1-8 Chiyoda-ku, Tokyo, 102-8472, Japan.

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http://dx.doi.org/10.1111/gtc.12123DOI Listing
March 2014

Dominant colonization and inheritance of Methylobacterium sp. strain OR01 on perilla plants.

Authors:
Masayuki Mizuno Hiroya Yurimoto Hiroyuki Iguchi Akio Tani Yasuyoshi Sakai

Biosci Biotechnol Biochem 2013 7;77(7):1533-8. Epub 2013 Jul 7.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1271/bbb.130207DOI Listing
February 2014

Hyper-activation of the target of rapamycin (Tor) kinase 1 decreases intracellular glutathione content in Saccharomyces cerevisiae as revealed by LC-MS/MS analysis.

Authors:
Masahide Oku Yayoi Ichiki Akiko Shiraishi Terunao Takahara Tatsuya Maeda Yasuyoshi Sakai

Biosci Biotechnol Biochem 2013 7;77(7):1608-11. Epub 2013 Jul 7.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1271/bbb.130314DOI Listing
February 2014

Aquatic plant surface as a niche for methanotrophs.

Authors:
Naoko Yoshida Hiroyuki Iguchi Hiroya Yurimoto Akio Murakami Yasuyoshi Sakai

Front Microbiol 2014 3;5:30. Epub 2014 Feb 3.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University Kyoto, Japan ; Advanced Low Carbon Technology Research and Development Program, Japan Science and Technology Agency Tokyo, Japan.

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http://dx.doi.org/10.3389/fmicb.2014.00030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3909826PMC
February 2014

Atg18 lifts up from and lands on the vacuolar membrane mediated by phosphorylation of its propellers.

Authors:
Masahide Oku Naoki Tamura Yasuyoshi Sakai

Autophagy 2013 Dec 22;9(12):2161-2. Epub 2013 Oct 22.

Division of Applied Life Sciences; Graduate School of Agriculture; Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.4161/auto.26379DOI Listing
December 2013

Stress resistance and C1 metabolism involved in plant colonization of a methanotroph Methylosinus sp. B4S.

Authors:
Hiroyuki Iguchi Izuru Sato Hiroya Yurimoto Yasuyoshi Sakai

Arch Microbiol 2013 Nov 15;195(10-11):717-26. Epub 2013 Sep 15.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, 606-8502, Japan.

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http://dx.doi.org/10.1007/s00203-013-0922-6DOI Listing
November 2013

Atg18 phosphoregulation controls organellar dynamics by modulating its phosphoinositide-binding activity.

Authors:
Naoki Tamura Masahide Oku Moemi Ito Nobuo N Noda Fuyuhiko Inagaki Yasuyoshi Sakai

J Cell Biol 2013 Aug 12;202(4):685-98. Epub 2013 Aug 12.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1083/jcb.201302067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3747300PMC
August 2013

Expression level of methanol-inducible peroxisomal proteins and peroxisome morphology are affected by oxygen conditions and mitochondrial respiratory pathway function in the methylotrophic yeast Candida boidinii.

Authors:
Shuki Fujimura Hiroya Yurimoto Shota Kurimoto Yoshimi Matsufuji Takashi Ito Takashi Hayakawa Noboru Tomizuka Yasuyoshi Sakai Tomoyuki Nakagawa

FEMS Yeast Res 2013 Jun 15;13(4):359-66. Epub 2013 Mar 15.

Department of Food Science and Technology, Faculty of Bioindustry, Tokyo University of Agriculture, Abashiri, Hokkaido, Japan.

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http://dx.doi.org/10.1111/1567-1364.12040DOI Listing
June 2013

Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium.

Authors:
Valentina N Khmelenina David A C Beck Christine Munk Karen Davenport Hajnalka Daligault Tracy Erkkila Lynne Goodwin Wei Gu Chien-Chi Lo Matthew Scholz Hazuki Teshima Yan Xu Patrick Chain Francoise Bringel Stéphane Vuilleumier Alan Dispirito Peter Dunfield Mike S M Jetten Martin G Klotz Claudia Knief J Colin Murrell Huub J M Op den Camp Yasuyoshi Sakai Jeremy Semrau Mette Svenning Lisa Y Stein Yuri A Trotsenko Marina G Kalyuzhnaya

Genome Announc 2013 Jun 27;1(4). Epub 2013 Jun 27.

GK Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Pushchino, Russia.

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http://dx.doi.org/10.1128/genomeA.00053-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3695433PMC
June 2013

Roseomonas musae sp. nov., a new bacterium isolated from a banana phyllosphere.

Authors:
Pumin Nutaratat Nantana Srisuk Kannika Duangmal Hiroya Yurimoto Yasuyoshi Sakai Yuki Muramatsu Yasuyoshi Nakagawa

Antonie Van Leeuwenhoek 2013 Mar 10;103(3):617-24. Epub 2012 Nov 10.

Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok, 10900, Thailand.

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http://dx.doi.org/10.1007/s10482-012-9845-5DOI Listing
March 2013

A fluorescence resonance energy transfer (FRET)-based redox sensor reveals physiological role of thioredoxin in the yeast Saccharomyces cerevisiae.

Authors:
Masahide Oku Jun Hoseki Yayoi Ichiki Yasuyoshi Sakai

FEBS Lett 2013 Mar 14;587(6):793-8. Epub 2013 Feb 14.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1016/j.febslet.2013.02.003DOI Listing
March 2013

Distribution of methanotrophs in the phyllosphere.

Authors:
Hiroyuki Iguchi Izuru Sato Maiko Sakakibara Hiroya Yurimoto Yasuyoshi Sakai

Biosci Biotechnol Biochem 2012 7;76(8):1580-3. Epub 2012 Aug 7.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1271/bbb.120281DOI Listing
February 2013

Primary and secondary metabolism regulates lipolysis in appressoria of Colletotrichum orbiculare.

Authors:
Makoto Asakura Kae Yoshino Alison M Hill Yasuyuki Kubo Yasuyoshi Sakai Yoshitaka Takano

Fungal Genet Biol 2012 Nov 12;49(11):967-75. Epub 2012 Sep 12.

Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.1016/j.fgb.2012.08.009DOI Listing
November 2012

Msn5p is involved in formaldehyde resistance but not in oxidative stress response in the methylotrophic yeast Candida boidinii.

Authors:
Zhenyu Zhai Hiroya Yurimoto Yasuyoshi Sakai

Biosci Biotechnol Biochem 2012 7;76(2):299-304. Epub 2012 Feb 7.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://www.tandfonline.com/doi/full/10.1271/bbb.110679
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http://dx.doi.org/10.1271/bbb.110679DOI Listing
July 2012

Distribution of pink-pigmented facultative methylotrophs on leaves of vegetables.

Authors:
Masayuki Mizuno Hiroya Yurimoto Naoko Yoshida Hiroyuki Iguchi Yasuyoshi Sakai

Biosci Biotechnol Biochem 2012 ;76(3):578-80

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, Japan.

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http://dx.doi.org/10.1271/bbb.110737DOI Listing
July 2012

Molecular characterization of Candida boidinii MIG1 and its role in the regulation of methanol-inducible gene expression.

Authors:
Zhenyu Zhai Hiroya Yurimoto Yasuyoshi Sakai

Yeast 2012 Jul 18;29(7):293-301. Epub 2012 Jun 18.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Japan.

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http://dx.doi.org/10.1002/yea.2909DOI Listing
July 2012

Assessment of physiological redox state with novel FRET protein probes.

Authors:
Masahide Oku Yasuyoshi Sakai

Antioxid Redox Signal 2012 Apr 21;16(7):698-704. Epub 2011 Oct 21.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.1089/ars.2011.4251DOI Listing
April 2012

Guidelines for the use and interpretation of assays for monitoring autophagy.

Authors:
Daniel J Klionsky Fabio C Abdalla Hagai Abeliovich Robert T Abraham Abraham Acevedo-Arozena Khosrow Adeli Lotta Agholme Maria Agnello Patrizia Agostinis Julio A Aguirre-Ghiso Hyung Jun Ahn Ouardia Ait-Mohamed Slimane Ait-Si-Ali Takahiko Akematsu Shizuo Akira Hesham M Al-Younes Munir A Al-Zeer Matthew L Albert Roger L Albin Javier Alegre-Abarrategui Maria Francesca Aleo Mehrdad Alirezaei Alexandru Almasan Maylin Almonte-Becerril Atsuo Amano Ravi Amaravadi Shoba Amarnath Amal O Amer Nathalie Andrieu-Abadie Vellareddy Anantharam David K Ann Shailendra Anoopkumar-Dukie Hiroshi Aoki Nadezda Apostolova Giuseppe Arancia John P Aris Katsuhiko Asanuma Nana Y O Asare Hisashi Ashida Valerie Askanas David S Askew Patrick Auberger Misuzu Baba Steven K Backues Eric H Baehrecke Ben A Bahr Xue-Yuan Bai Yannick Bailly Robert Baiocchi Giulia Baldini Walter Balduini Andrea Ballabio Bruce A Bamber Edward T W Bampton Gábor Bánhegyi Clinton R Bartholomew Diane C Bassham Robert C Bast Henri Batoko Boon-Huat Bay Isabelle Beau Daniel M Béchet Thomas J Begley Christian Behl Christian Behrends Soumeya Bekri Bryan Bellaire Linda J Bendall Luca Benetti Laura Berliocchi Henri Bernardi Francesca Bernassola Sébastien Besteiro Ingrid Bhatia-Kissova Xiaoning Bi Martine Biard-Piechaczyk Janice S Blum Lawrence H Boise Paolo Bonaldo David L Boone Beat C Bornhauser Karina R Bortoluci Ioannis Bossis Frédéric Bost Jean-Pierre Bourquin Patricia Boya Michaël Boyer-Guittaut Peter V Bozhkov Nathan R Brady Claudio Brancolini Andreas Brech Jay E Brenman Ana Brennand Emery H Bresnick Patrick Brest Dave Bridges Molly L Bristol Paul S Brookes Eric J Brown John H Brumell Nicola Brunetti-Pierri Ulf T Brunk Dennis E Bulman Scott J Bultman Geert Bultynck Lena F Burbulla Wilfried Bursch Jonathan P Butchar Wanda Buzgariu Sergio P Bydlowski Ken Cadwell Monika Cahová Dongsheng Cai Jiyang Cai Qian Cai Bruno Calabretta Javier Calvo-Garrido Nadine Camougrand Michelangelo Campanella Jenny Campos-Salinas Eleonora Candi Lizhi Cao Allan B Caplan Simon R Carding Sandra M Cardoso Jennifer S Carew Cathleen R Carlin Virginie Carmignac Leticia A M Carneiro Serena Carra Rosario A Caruso Giorgio Casari Caty Casas Roberta Castino Eduardo Cebollero Francesco Cecconi Jean Celli Hassan Chaachouay Han-Jung Chae Chee-Yin Chai David C Chan Edmond Y Chan Raymond Chuen-Chung Chang Chi-Ming Che Ching-Chow Chen Guang-Chao Chen Guo-Qiang Chen Min Chen Quan Chen Steve S-L Chen WenLi Chen Xi Chen Xiangmei Chen Xiequn Chen Ye-Guang Chen Yingyu Chen Yongqiang Chen Yu-Jen Chen Zhixiang Chen Alan Cheng Christopher H K Cheng Yan Cheng Heesun Cheong Jae-Ho Cheong Sara Cherry Russ Chess-Williams Zelda H Cheung Eric Chevet Hui-Ling Chiang Roberto Chiarelli Tomoki Chiba Lih-Shen Chin Shih-Hwa Chiou Francis V Chisari Chi Hin Cho Dong-Hyung Cho Augustine M K Choi DooSeok Choi Kyeong Sook Choi Mary E Choi Salem Chouaib Divaker Choubey Vinay Choubey Charleen T Chu Tsung-Hsien Chuang Sheau-Huei Chueh Taehoon Chun Yong-Joon Chwae Mee-Len Chye Roberto Ciarcia Maria R Ciriolo Michael J Clague Robert S B Clark Peter G H Clarke Robert Clarke Patrice Codogno Hilary A Coller María I Colombo Sergio Comincini Maria Condello Fabrizio Condorelli Mark R Cookson Graham H Coombs Isabelle Coppens Ramon Corbalan Pascale Cossart Paola Costelli Safia Costes Ana Coto-Montes Eduardo Couve Fraser P Coxon James M Cregg José L Crespo Marianne J Cronjé Ana Maria Cuervo Joseph J Cullen Mark J Czaja Marcello D'Amelio Arlette Darfeuille-Michaud Lester M Davids Faith E Davies Massimo De Felici John F de Groot Cornelis A M de Haan Luisa De Martino Angelo De Milito Vincenzo De Tata Jayanta Debnath Alexei Degterev Benjamin Dehay Lea M D Delbridge Francesca Demarchi Yi Zhen Deng Jörn Dengjel Paul Dent Donna Denton Vojo Deretic Shyamal D Desai Rodney J Devenish Mario Di Gioacchino Gilbert Di Paolo Chiara Di Pietro Guillermo Díaz-Araya Inés Díaz-Laviada Maria T Diaz-Meco Javier Diaz-Nido Ivan Dikic Savithramma P Dinesh-Kumar Wen-Xing Ding Clark W Distelhorst Abhinav Diwan Mojgan Djavaheri-Mergny Svetlana Dokudovskaya Zheng Dong Frank C Dorsey Victor Dosenko James J Dowling Stephen Doxsey Marlène Dreux Mark E Drew Qiuhong Duan Michel A Duchosal Karen Duff Isabelle Dugail Madeleine Durbeej Michael Duszenko Charles L Edelstein Aimee L Edinger Gustavo Egea Ludwig Eichinger N Tony Eissa Suhendan Ekmekcioglu Wafik S El-Deiry Zvulun Elazar Mohamed Elgendy Lisa M Ellerby Kai Er Eng Anna-Mart Engelbrecht Simone Engelender Jekaterina Erenpreisa Ricardo Escalante Audrey Esclatine Eeva-Liisa Eskelinen Lucile Espert Virginia Espina Huizhou Fan Jia Fan Qi-Wen Fan Zhen Fan Shengyun Fang Yongqi Fang Manolis Fanto Alessandro Fanzani Thomas Farkas Jean-Claude Farré Mathias Faure Marcus Fechheimer Carl G Feng Jian Feng Qili Feng Youji Feng László Fésüs Ralph Feuer Maria E Figueiredo-Pereira Gian Maria Fimia Diane C Fingar Steven Finkbeiner Toren Finkel Kim D Finley Filomena Fiorito Edward A Fisher Paul B Fisher Marc Flajolet Maria L Florez-McClure Salvatore Florio Edward A Fon Francesco Fornai Franco Fortunato Rati Fotedar Daniel H Fowler Howard S Fox Rodrigo Franco Lisa B Frankel Marc Fransen José M Fuentes Juan Fueyo Jun Fujii Kozo Fujisaki Eriko Fujita Mitsunori Fukuda Ruth H Furukawa Matthias Gaestel Philippe Gailly Malgorzata Gajewska Brigitte Galliot Vincent Galy Subramaniam Ganesh Barry Ganetzky Ian G Ganley Fen-Biao Gao George F Gao Jinming Gao Lorena Garcia Guillermo Garcia-Manero Mikel Garcia-Marcos Marjan Garmyn Andrei L Gartel Evelina Gatti Mathias Gautel Thomas R Gawriluk Matthew E Gegg Jiefei Geng Marc Germain Jason E Gestwicki David A Gewirtz Saeid Ghavami Pradipta Ghosh Anna M Giammarioli Alexandra N Giatromanolaki Spencer B Gibson Robert W Gilkerson Michael L Ginger Henry N Ginsberg Jakub Golab Michael S Goligorsky Pierre Golstein Candelaria Gomez-Manzano Ebru Goncu Céline Gongora Claudio D Gonzalez Ramon Gonzalez Cristina González-Estévez Rosa Ana González-Polo Elena Gonzalez-Rey Nikolai V Gorbunov Sharon Gorski Sandro Goruppi Roberta A Gottlieb Devrim Gozuacik Giovanna Elvira Granato Gary D Grant Kim N Green Aleš Gregorc Frédéric Gros Charles Grose Thomas W Grunt Philippe Gual Jun-Lin Guan Kun-Liang Guan Sylvie M Guichard Anna S Gukovskaya Ilya Gukovsky Jan Gunst Asa B Gustafsson Andrew J Halayko Amber N Hale Sandra K Halonen Maho Hamasaki Feng Han Ting Han Michael K Hancock Malene Hansen Hisashi Harada Masaru Harada Stefan E Hardt J Wade Harper Adrian L Harris James Harris Steven D Harris Makoto Hashimoto Jeffrey A Haspel Shin-ichiro Hayashi Lori A Hazelhurst Congcong He You-Wen He Marie-Joseé Hébert Kim A Heidenreich Miep H Helfrich Gudmundur V Helgason Elizabeth P Henske Brian Herman Paul K Herman Claudio Hetz Sabine Hilfiker Joseph A Hill Lynne J Hocking Paul Hofman Thomas G Hofmann Jörg Höhfeld Tessa L Holyoake Ming-Huang Hong David A Hood Gökhan S Hotamisligil Ewout J Houwerzijl Maria Høyer-Hansen Bingren Hu Chien-An A Hu Hong-Ming Hu Ya Hua Canhua Huang Ju Huang Shengbing Huang Wei-Pang Huang Tobias B Huber Won-Ki Huh Tai-Ho Hung Ted R Hupp Gang Min Hur James B Hurley Sabah N A Hussain Patrick J Hussey Jung Jin Hwang Seungmin Hwang Atsuhiro Ichihara Shirin Ilkhanizadeh Ken Inoki Takeshi Into Valentina Iovane Juan L Iovanna Nancy Y Ip Yoshitaka Isaka Hiroyuki Ishida Ciro Isidoro Ken-ichi Isobe Akiko Iwasaki Marta Izquierdo Yotaro Izumi Panu M Jaakkola Marja Jäättelä George R Jackson William T Jackson Bassam Janji Marina Jendrach Ju-Hong Jeon Eui-Bae Jeung Hong Jiang Hongchi Jiang Jean X Jiang Ming Jiang Qing Jiang Xuejun Jiang Xuejun Jiang Alberto Jiménez Meiyan Jin Shengkan Jin Cheol O Joe Terje Johansen Daniel E Johnson Gail V W Johnson Nicola L Jones Bertrand Joseph Suresh K Joseph Annie M Joubert Gábor Juhász Lucienne Juillerat-Jeanneret Chang Hwa Jung Yong-Keun Jung Kai Kaarniranta Allen Kaasik Tomohiro Kabuta Motoni Kadowaki Katarina Kagedal Yoshiaki Kamada Vitaliy O Kaminskyy Harm H Kampinga Hiromitsu Kanamori Chanhee Kang Khong Bee Kang Kwang Il Kang Rui Kang Yoon-A Kang Tomotake Kanki Thirumala-Devi Kanneganti Haruo Kanno Anumantha G Kanthasamy Arthi Kanthasamy Vassiliki Karantza Gur P Kaushal Susmita Kaushik Yoshinori Kawazoe Po-Yuan Ke John H Kehrl Ameeta Kelekar Claus Kerkhoff David H Kessel Hany Khalil Jan A K W Kiel Amy A Kiger Akio Kihara Deok Ryong Kim Do-Hyung Kim Dong-Hou Kim Eun-Kyoung Kim Hyung-Ryong Kim Jae-Sung Kim Jeong Hun Kim Jin Cheon Kim John K Kim Peter K Kim Seong Who Kim Yong-Sun Kim Yonghyun Kim Adi Kimchi Alec C Kimmelman Jason S King Timothy J Kinsella Vladimir Kirkin Lorrie A Kirshenbaum Katsuhiko Kitamoto Kaio Kitazato Ludger Klein Walter T Klimecki Jochen Klucken Erwin Knecht Ben C B Ko Jan C Koch Hiroshi Koga Jae-Young Koh Young Ho Koh Masato Koike Masaaki Komatsu Eiki Kominami Hee Jeong Kong Wei-Jia Kong Viktor I Korolchuk Yaichiro Kotake Michael I Koukourakis Juan B Kouri Flores Attila L Kovács Claudine Kraft Dimitri Krainc Helmut Krämer Carole Kretz-Remy Anna M Krichevsky Guido Kroemer Rejko Krüger Oleg Krut Nicholas T Ktistakis Chia-Yi Kuan Roza Kucharczyk Ashok Kumar Raj Kumar Sharad Kumar Mondira Kundu Hsing-Jien Kung Tino Kurz Ho Jeong Kwon Albert R La Spada Frank Lafont Trond Lamark Jacques Landry Jon D Lane Pierre Lapaquette Jocelyn F Laporte Lajos László Sergio Lavandero Josée N Lavoie Robert Layfield Pedro A Lazo Weidong Le Laurent Le Cam Daniel J Ledbetter Alvin J X Lee Byung-Wan Lee Gyun Min Lee Jongdae Lee Ju-Hyun Lee Michael Lee Myung-Shik Lee Sug Hyung Lee Christiaan Leeuwenburgh Patrick Legembre Renaud Legouis Michael Lehmann Huan-Yao Lei Qun-Ying Lei David A Leib José Leiro John J Lemasters Antoinette Lemoine Maciej S Lesniak Dina Lev Victor V Levenson Beth Levine Efrat Levy Faqiang Li Jun-Lin Li Lian Li Sheng Li Weijie Li Xue-Jun Li Yan-bo Li Yi-Ping Li Chengyu Liang Qiangrong Liang Yung-Feng Liao Pawel P Liberski Andrew Lieberman Hyunjung J Lim Kah-Leong Lim Kyu Lim Chiou-Feng Lin Fu-Cheng Lin Jian Lin Jiandie D Lin Kui Lin Wan-Wan Lin Weei-Chin Lin Yi-Ling Lin Rafael Linden Paul Lingor Jennifer Lippincott-Schwartz Michael P Lisanti Paloma B Liton Bo Liu Chun-Feng Liu Kaiyu Liu Leyuan Liu Qiong A Liu Wei Liu Young-Chau Liu Yule Liu Richard A Lockshin Chun-Nam Lok Sagar Lonial Benjamin Loos Gabriel Lopez-Berestein Carlos López-Otín Laura Lossi Michael T Lotze Peter Lőw Binfeng Lu Bingwei Lu Bo Lu Zhen Lu Frédéric Luciano Nicholas W Lukacs Anders H Lund Melinda A Lynch-Day Yong Ma Fernando Macian Jeff P MacKeigan Kay F Macleod Frank Madeo Luigi Maiuri Maria Chiara Maiuri Davide Malagoli May Christine V Malicdan Walter Malorni Na Man Eva-Maria Mandelkow Stéphen Manon Irena Manov Kai Mao Xiang Mao Zixu Mao Philippe Marambaud Daniela Marazziti Yves L Marcel Katie Marchbank Piero Marchetti Stefan J Marciniak Mateus Marcondes Mohsen Mardi Gabriella Marfe Guillermo Mariño Maria Markaki Mark R Marten Seamus J Martin Camille Martinand-Mari Wim Martinet Marta Martinez-Vicente Matilde Masini Paola Matarrese Saburo Matsuo Raffaele Matteoni Andreas Mayer Nathalie M Mazure David J McConkey Melanie J McConnell Catherine McDermott Christine McDonald Gerald M McInerney Sharon L McKenna BethAnn McLaughlin Pamela J McLean Christopher R McMaster G Angus McQuibban Alfred J Meijer Miriam H Meisler Alicia Meléndez Thomas J Melia Gerry Melino Maria A Mena Javier A Menendez Rubem F S Menna-Barreto Manoj B Menon Fiona M Menzies Carol A Mercer Adalberto Merighi Diane E Merry Stefania Meschini Christian G Meyer Thomas F Meyer Chao-Yu Miao Jun-Ying Miao Paul A M Michels Carine Michiels Dalibor Mijaljica Ana Milojkovic Saverio Minucci Clelia Miracco Cindy K Miranti Ioannis Mitroulis Keisuke Miyazawa Noboru Mizushima Baharia Mograbi Simin Mohseni Xavier Molero Bertrand Mollereau Faustino Mollinedo Takashi Momoi Iryna Monastyrska Martha M Monick Mervyn J Monteiro Michael N Moore Rodrigo Mora Kevin Moreau Paula I Moreira Yuji Moriyasu Jorge Moscat Serge Mostowy Jeremy C Mottram Tomasz Motyl Charbel E-H Moussa Sylke Müller Sylviane Muller Karl Münger Christian Münz Leon O Murphy Maureen E Murphy Antonio Musarò Indira Mysorekar Eiichiro Nagata Kazuhiro Nagata Aimable Nahimana Usha Nair Toshiyuki Nakagawa Kiichi Nakahira Hiroyasu Nakano Hitoshi Nakatogawa Meera Nanjundan Naweed I Naqvi Derek P Narendra Masashi Narita Miguel Navarro Steffan T Nawrocki Taras Y Nazarko Andriy Nemchenko Mihai G Netea Thomas P Neufeld Paul A Ney Ioannis P Nezis Huu Phuc Nguyen Daotai Nie Ichizo Nishino Corey Nislow Ralph A Nixon Takeshi Noda Angelika A Noegel Anna Nogalska Satoru Noguchi Lucia Notterpek Ivana Novak Tomoyoshi Nozaki Nobuyuki Nukina Thorsten Nürnberger Beat Nyfeler Keisuke Obara Terry D Oberley Salvatore Oddo Michinaga Ogawa Toya Ohashi Koji Okamoto Nancy L Oleinick F Javier Oliver Laura J Olsen Stefan Olsson Onya Opota Timothy F Osborne Gary K Ostrander Kinya Otsu Jing-hsiung James Ou Mireille Ouimet Michael Overholtzer Bulent Ozpolat Paolo Paganetti Ugo Pagnini Nicolas Pallet Glen E Palmer Camilla Palumbo Tianhong Pan Theocharis Panaretakis Udai Bhan Pandey Zuzana Papackova Issidora Papassideri Irmgard Paris Junsoo Park Ohkmae K Park Jan B Parys Katherine R Parzych Susann Patschan Cam Patterson Sophie Pattingre John M Pawelek Jianxin Peng David H Perlmutter Ida Perrotta George Perry Shazib Pervaiz Matthias Peter Godefridus J Peters Morten Petersen Goran Petrovski James M Phang Mauro Piacentini Philippe Pierre Valérie Pierrefite-Carle Gérard Pierron Ronit Pinkas-Kramarski Antonio Piras Natik Piri Leonidas C Platanias Stefanie Pöggeler Marc Poirot Angelo Poletti Christian Poüs Mercedes Pozuelo-Rubio Mette Prætorius-Ibba Anil Prasad Mark Prescott Muriel Priault Nathalie Produit-Zengaffinen Ann Progulske-Fox Tassula Proikas-Cezanne Serge Przedborski Karin Przyklenk Rosa Puertollano Julien Puyal Shu-Bing Qian Liang Qin Zheng-Hong Qin Susan E Quaggin Nina Raben Hannah Rabinowich Simon W Rabkin Irfan Rahman Abdelhaq Rami Georg Ramm Glenn Randall Felix Randow V Ashutosh Rao Jeffrey C Rathmell Brinda Ravikumar Swapan K Ray Bruce H Reed John C Reed Fulvio Reggiori Anne Régnier-Vigouroux Andreas S Reichert John J Reiners Russel J Reiter Jun Ren José L Revuelta Christopher J Rhodes Konstantinos Ritis Elizete Rizzo Jeffrey Robbins Michel Roberge Hernan Roca Maria C Roccheri Stephane Rocchi H Peter Rodemann Santiago Rodríguez de Córdoba Bärbel Rohrer Igor B Roninson Kirill Rosen Magdalena M Rost-Roszkowska Mustapha Rouis Kasper M A Rouschop Francesca Rovetta Brian P Rubin David C Rubinsztein Klaus Ruckdeschel Edmund B Rucker Assaf Rudich Emil Rudolf Nelson Ruiz-Opazo Rossella Russo Tor Erik Rusten Kevin M Ryan Stefan W Ryter David M Sabatini Junichi Sadoshima Tapas Saha Tatsuya Saitoh Hiroshi Sakagami Yasuyoshi Sakai Ghasem Hoseini Salekdeh Paolo Salomoni Paul M Salvaterra Guy Salvesen Rosa Salvioli Anthony M J Sanchez José A Sánchez-Alcázar Ricardo Sánchez-Prieto Marco Sandri Uma Sankar Poonam Sansanwal Laura Santambrogio Shweta Saran Sovan Sarkar Minnie Sarwal Chihiro Sasakawa Ausra Sasnauskiene Miklós Sass Ken Sato Miyuki Sato Anthony H V Schapira Michael Scharl Hermann M Schätzl Wiep Scheper Stefano Schiaffino Claudio Schneider Marion E Schneider Regine Schneider-Stock Patricia V Schoenlein Daniel F Schorderet Christoph Schüller Gary K Schwartz Luca Scorrano Linda Sealy Per O Seglen Juan Segura-Aguilar Iban Seiliez Oleksandr Seleverstov Christian Sell Jong Bok Seo Duska Separovic Vijayasaradhi Setaluri Takao Setoguchi Carmine Settembre John J Shacka Mala Shanmugam Irving M Shapiro Eitan Shaulian Reuben J Shaw James H Shelhamer Han-Ming Shen Wei-Chiang Shen Zu-Hang Sheng Yang Shi Kenichi Shibuya Yoshihiro Shidoji Jeng-Jer Shieh Chwen-Ming Shih Yohta Shimada Shigeomi Shimizu Takahiro Shintani Orian S Shirihai Gordon C Shore Andriy A Sibirny Stan B Sidhu Beata Sikorska Elaine C M Silva-Zacarin Alison Simmons Anna Katharina Simon Hans-Uwe Simon Cristiano Simone Anne Simonsen David A Sinclair Rajat Singh Debasish Sinha Frank A Sinicrope Agnieszka Sirko Parco M Siu Efthimios Sivridis Vojtech Skop Vladimir P Skulachev Ruth S Slack Soraya S Smaili Duncan R Smith Maria S Soengas Thierry Soldati Xueqin Song Anil K Sood Tuck Wah Soong Federica Sotgia Stephen A Spector Claudia D Spies Wolfdieter Springer Srinivasa M Srinivasula Leonidas Stefanis Joan S Steffan Ruediger Stendel Harald Stenmark Anastasis Stephanou Stephan T Stern Cinthya Sternberg Björn Stork Peter Strålfors Carlos S Subauste Xinbing Sui David Sulzer Jiaren Sun Shi-Yong Sun Zhi-Jun Sun Joseph J Y Sung Kuninori Suzuki Toshihiko Suzuki Michele S Swanson Charles Swanton Sean T Sweeney Lai-King Sy Gyorgy Szabadkai Ira Tabas Heinrich Taegtmeyer Marco Tafani Krisztina Takács-Vellai Yoshitaka Takano Kaoru Takegawa Genzou Takemura Fumihiko Takeshita Nicholas J Talbot Kevin S W Tan Keiji Tanaka Kozo Tanaka Daolin Tang Dingzhong Tang Isei Tanida Bakhos A Tannous Nektarios Tavernarakis Graham S Taylor Gregory A Taylor J Paul Taylor Lance S Terada Alexei Terman Gianluca Tettamanti Karin Thevissen Craig B Thompson Andrew Thorburn Michael Thumm FengFeng Tian Yuan Tian Glauco Tocchini-Valentini Aviva M Tolkovsky Yasuhiko Tomino Lars Tönges Sharon A Tooze Cathy Tournier John Tower Roberto Towns Vladimir Trajkovic Leonardo H Travassos Ting-Fen Tsai Mario P Tschan Takeshi Tsubata Allan Tsung Boris Turk Lorianne S Turner Suresh C Tyagi Yasuo Uchiyama Takashi Ueno Midori Umekawa Rika Umemiya-Shirafuji Vivek K Unni Maria I Vaccaro Enza Maria Valente Greet Van den Berghe Ida J van der Klei Wouter van Doorn Linda F van Dyk Marjolein van Egmond Leo A van Grunsven Peter Vandenabeele Wim P Vandenberghe Ilse Vanhorebeek Eva C Vaquero Guillermo Velasco Tibor Vellai Jose Miguel Vicencio Richard D Vierstra Miquel Vila Cécile Vindis Giampietro Viola Maria Teresa Viscomi Olga V Voitsekhovskaja Clarissa von Haefen Marcela Votruba Keiji Wada Richard Wade-Martins Cheryl L Walker Craig M Walsh Jochen Walter Xiang-Bo Wan Aimin Wang Chenguang Wang Dawei Wang Fan Wang Fen Wang Guanghui Wang Haichao Wang 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Yoshikawa Tamotsu Yoshimori Kohki Yoshimoto Ho Jin You Richard J Youle Anas Younes Li Yu Long Yu Seong-Woon Yu Wai Haung Yu Zhi-Min Yuan Zhenyu Yue Cheol-Heui Yun Michisuke Yuzaki Olga Zabirnyk Elaine Silva-Zacarin David Zacks Eldad Zacksenhaus Nadia Zaffaroni Zahra Zakeri Herbert J Zeh Scott O Zeitlin Hong Zhang Hui-Ling Zhang Jianhua Zhang Jing-Pu Zhang Lin Zhang Long Zhang Ming-Yong Zhang Xu Dong Zhang Mantong Zhao Yi-Fang Zhao Ying Zhao Zhizhuang J Zhao Xiaoxiang Zheng Boris Zhivotovsky Qing Zhong Cong-Zhao Zhou Changlian Zhu Wei-Guo Zhu Xiao-Feng Zhu Xiongwei Zhu Yuangang Zhu Teresa Zoladek Wei-Xing Zong Antonio Zorzano Jürgen Zschocke Brian Zuckerbraun

Autophagy 2012 Apr;8(4):445-544

Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA.

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http://dx.doi.org/10.4161/auto.19496DOI Listing
April 2012

Yeast methylotrophy and autophagy in a methanol-oscillating environment on growing Arabidopsis thaliana leaves.

Authors:
Kosuke Kawaguchi Hiroya Yurimoto Masahide Oku Yasuyoshi Sakai

PLoS One 2011 26;6(9):e25257. Epub 2011 Sep 26.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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February 2012

Stimulation of methanotrophic growth in cocultures by cobalamin excreted by rhizobia.

Authors:
Hiroyuki Iguchi Hiroya Yurimoto Yasuyoshi Sakai

Appl Environ Microbiol 2011 Dec 7;77(24):8509-15. Epub 2011 Oct 7.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3233106PMC
December 2011

Inhibition of surgical trauma-enhanced peritoneal dissemination of tumor cells by human catalase derivatives in mice.

Authors:
Chika Nishizaki Makiya Nishikawa Tomoya Yata Toshiyuki Yamada Yuki Takahashi Masahide Oku Hiroya Yurimoto Yasuyoshi Sakai Kenji Nakanishi Yoshinobu Takakura

Free Radic Biol Med 2011 Aug 27;51(3):773-9. Epub 2011 May 27.

Department of Biopharmaceutics and Drug Metabolism, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan.

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August 2011

Yeast methylotrophy: metabolism, gene regulation and peroxisome homeostasis.

Authors:
Hiroya Yurimoto Masahide Oku Yasuyoshi Sakai

Int J Microbiol 2011 7;2011:101298. Epub 2011 Jul 7.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.

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July 2011

Characterization of a new (R)-hydroxynitrile lyase from the Japanese apricot Prunus mume and cDNA cloning and secretory expression of one of the isozymes in Pichia pastoris.

Authors:
Yasuhisa Fukuta Samik Nanda Yasuo Kato Hiroya Yurimoto Yasuyoshi Sakai Hidenobu Komeda Yasuhisa Asano

Biosci Biotechnol Biochem 2011 7;75(2):214-20. Epub 2011 Feb 7.

Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, Toyama, Japan.

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June 2011

Methylovulum miyakonense gen. nov., sp. nov., a type I methanotroph isolated from forest soil.

Authors:
Hiroyuki Iguchi Hiroya Yurimoto Yasuyoshi Sakai

Int J Syst Evol Microbiol 2011 Apr 30;61(Pt 4):810-5. Epub 2010 Apr 30.

Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, Japan.

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April 2011

The peroxisomal catalase gene in the methylotrophic yeast Pichia methanolica.

Authors:
Tomoyuki Nakagawa Kyoko Yoshida Akihito Takeuchi Takashi Ito Shuki Fujimura Yoshimi Matsufuji Noboru Tomizuka Hiroya Yurimoto Yasuyoshi Sakai Takashi Hayakawa

Biosci Biotechnol Biochem 2010 7;74(8):1733-5. Epub 2010 Aug 7.

Faculty of Applied Biological Science, Gifu University, Yanagido, Gifu, Japan.

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December 2010

Crystal structure of 3-hexulose-6-phosphate synthase, a member of the orotidine 5'-monophosphate decarboxylase suprafamily.

Authors:
Izumi Orita Akiko Kita Hiroya Yurimoto Nobuo Kato Yasuyoshi Sakai Kunio Miki

Proteins 2010 Dec;78(16):3488-92

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.

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December 2010

Atg8 regulates vacuolar membrane dynamics in a lipidation-independent manner in Pichia pastoris.

Authors:
Naoki Tamura Masahide Oku Yasuyoshi Sakai

J Cell Sci 2010 Dec 2;123(Pt 23):4107-16. Epub 2010 Nov 2.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo, Kyoto 606-8502, Japan.

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December 2010

Molecular characterization of two genes with high similarity to the dihydroxyacetone synthase gene in the methylotrophic yeast Pichia methanolica.

Authors:
Tomoyuki Nakagawa Shuki Fujimura Takashi Ito Yoshimi Matsufuji Shotaro Ozawa Tatsuro Miyaji Junichi Nakagawa Noboru Tomizuka Hiroya Yurimoto Yasuyoshi Sakai Takashi Hayakawa

Biosci Biotechnol Biochem 2010 7;74(7):1491-3. Epub 2010 Jul 7.

Faculty of Applied Biological Science, Gifu University.

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November 2010

Soluble and particulate methane monooxygenase gene clusters of the type I methanotroph Methylovulum miyakonense HT12.

Authors:
Hiroyuki Iguchi Hiroya Yurimoto Yasuyoshi Sakai

FEMS Microbiol Lett 2010 Nov 15;312(1):71-6. Epub 2010 Sep 15.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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November 2010

Overexpression of an HPS/PHI fusion enzyme from Mycobacterium gastri in chloroplasts of geranium enhances its ability to assimilate and phytoremediate formaldehyde.

Authors:
Zhongbang Song Izumi Orita Fei Yin Hiroya Yurimoto Nobuo Kato Yasuyoshi Sakai Katsura Izui Kunzhi Li Limei Chen

Biotechnol Lett 2010 Oct 15;32(10):1541-8. Epub 2010 Jun 15.

Biotechnology Research Center, Kunming University of Science and Technology, Bailong Campus, Bailongsi, Bailong Road, Kunming, 650224, China.

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http://dx.doi.org/10.1007/s10529-010-0324-7DOI Listing
October 2010

Trm2p-dependent derepression is essential for methanol-specific gene activation in the methylotrophic yeast Candida boidinii.

Authors:
Yu Sasano Hiroya Yurimoto Masamitsu Kuriyama Yasuyoshi Sakai

FEMS Yeast Res 2010 Aug 29;10(5):535-44. Epub 2010 Apr 29.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, Japan.

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August 2010

A novel fluorescent sensor protein for visualization of redox states in the cytoplasm and in peroxisomes.

Authors:
Taisuke Yano Masahide Oku Natsuko Akeyama Akinori Itoyama Hiroya Yurimoto Shusuke Kuge Yukio Fujiki Yasuyoshi Sakai

Mol Cell Biol 2010 Aug 24;30(15):3758-66. Epub 2010 May 24.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, Japan.

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August 2010

Peroxisomes as dynamic organelles: autophagic degradation.

Authors:
Masahide Oku Yasuyoshi Sakai

FEBS J 2010 Aug 12;277(16):3289-94. Epub 2010 Jul 12.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto, Japan.

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August 2010

Assimilation of formaldehyde in transgenic plants due to the introduction of the bacterial ribulose monophosphate pathway genes.

Authors:
Li-mei Chen Hiroya Yurimoto Kun-zhi Li Izumi Orita Motomu Akita Nobuo Kato Yasuyoshi Sakai Katsura Izui

Biosci Biotechnol Biochem 2010 7;74(3):627-35. Epub 2010 Mar 7.

Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.

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July 2010

Autophagy in plants and phytopathogens.

Authors:
Kohki Yoshimoto Yoshitaka Takano Yasuyoshi Sakai

FEBS Lett 2010 Apr 14;584(7):1350-8. Epub 2010 Jan 14.

Plant Immunity Research Team, RIKEN Plant Science Center, Tsurumi-ku, Yokohama, Kanagawa, Japan.

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April 2010

Control of hypoxia-induced tumor cell adhesion by cytophilic human catalase.

Authors:
Tomoya Yata Makiya Nishikawa Chika Nishizaki Masahide Oku Hiroya Yurimoto Yasuyoshi Sakai Yoshinobu Takakura

Free Radic Biol Med 2009 Dec 3;47(12):1772-8. Epub 2009 Oct 3.

Department of Biopharmaceutics and Drug Metabolism, Graduate School of Pharmaceutical Science, Kyoto University, Sakyo-ku, Kyoto 606-8501, Sakyo-ku, Japan.

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December 2009

Atg26-mediated pexophagy and fungal phytopathogenicity.

Authors:
Yoshitaka Takano Makoto Asakura Yasuyoshi Sakai

Autophagy 2009 Oct 19;5(7):1041-2. Epub 2009 Oct 19.

Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.4161/auto.5.7.9316DOI Listing
October 2009

Genomic organization and biochemistry of the ribulose monophosphate pathway and its application in biotechnology.

Authors:
Hiroya Yurimoto Nobuo Kato Yasuyoshi Sakai

Appl Microbiol Biotechnol 2009 Sep 11;84(3):407-16. Epub 2009 Jul 11.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, 606-8502, Japan.

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September 2009

Lag-phase autophagy in the methylotrophic yeast Pichia pastoris.

Authors:
Shun-ichi Yamashita Hiroya Yurimoto Dai Murakami Mari Yoshikawa Masahide Oku Yasuyoshi Sakai

Genes Cells 2009 Jul 22;14(7):861-70. Epub 2009 Jun 22.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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July 2009

Crystallization of Saccharomyces cerevisiae alpha-mannosidase, a cargo protein of the Cvt pathway.

Authors:
Yasunori Watanabe Nobuo N Noda Kazuya Honbou Kuninori Suzuki Yasuyoshi Sakai Yoshinori Ohsumi Fuyuhiko Inagaki

Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 Jun 22;65(Pt 6):571-3. Epub 2009 May 22.

Department of Structural Biology, Graduate School of Pharmaceutical Sciences, Hokkaido University, N-12, W-6, Kita-ku, Sapporo 060-0812, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688412PMC
June 2009

Activation of the oxidative stress regulator PpYap1 through conserved cysteine residues during methanol metabolism in the yeast Pichia pastoris.

Authors:
Taisuke Yano Hiroya Yurimoto Yasuyoshi Sakai

Biosci Biotechnol Biochem 2009 Jun 7;73(6):1404-11. Epub 2009 Jun 7.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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June 2009

Methanol-inducible gene expression and heterologous protein production in the methylotrophic yeast Candida boidinii.

Authors:
Hiroya Yurimoto Yasuyoshi Sakai

Biotechnol Appl Biochem 2009 May 6;53(Pt 2):85-92. Epub 2009 May 6.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://doi.wiley.com/10.1042/BA20090030
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May 2009

Yap1-regulated glutathione redox system curtails accumulation of formaldehyde and reactive oxygen species in methanol metabolism of Pichia pastoris.

Authors:
Taisuke Yano Emiko Takigami Hiroya Yurimoto Yasuyoshi Sakai

Eukaryot Cell 2009 Apr 27;8(4):540-9. Epub 2009 Feb 27.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://ec.asm.org/lookup/doi/10.1128/EC.00007-09
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2669188PMC
April 2009

Atg26-mediated pexophagy is required for host invasion by the plant pathogenic fungus Colletotrichum orbiculare.

Authors:
Makoto Asakura Sachiko Ninomiya Miki Sugimoto Masahide Oku Shun-Ichi Yamashita Tetsuro Okuno Yasuyoshi Sakai Yoshitaka Takano

Plant Cell 2009 Apr 10;21(4):1291-304. Epub 2009 Apr 10.

Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://www.plantcell.org/cgi/doi/10.1105/tpc.108.060996
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2685618PMC
April 2009

Overexpression and purification of rat peroxisomal membrane protein 22, PMP22, in Pichia pastoris.

Authors:
Kyoko Egawa Hiroyuki Shibata Shun-ichi Yamashita Hiroya Yurimoto Yasuyoshi Sakai Hiroaki Kato

Protein Expr Purif 2009 Mar 19;64(1):47-54. Epub 2008 Oct 19.

Department of Structural Biology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan.

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March 2009

Pexophagy in Pichia pastoris.

Authors:
Masahide Oku Yasuyoshi Sakai

Methods Enzymol 2008 ;451:217-28

CREST, Japan Science and Technology Agency, Japan, and Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.1016/S0076-6879(08)03215-1DOI Listing
March 2009

Trm1p, a Zn(II)2Cys6-type transcription factor, is a master regulator of methanol-specific gene activation in the methylotrophic yeast Candida boidinii.

Authors:
Yu Sasano Hiroya Yurimoto Mikiko Yanaka Yasuyoshi Sakai

Eukaryot Cell 2008 Mar 18;7(3):527-36. Epub 2008 Jan 18.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2268522PMC
March 2008

Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes.

Authors:
Daniel J Klionsky Hagai Abeliovich Patrizia Agostinis Devendra K Agrawal Gjumrakch Aliev David S Askew Misuzu Baba Eric H Baehrecke Ben A Bahr Andrea Ballabio Bruce A Bamber Diane C Bassham Ettore Bergamini Xiaoning Bi Martine Biard-Piechaczyk Janice S Blum Dale E Bredesen Jeffrey L Brodsky John H Brumell Ulf T Brunk Wilfried Bursch Nadine Camougrand Eduardo Cebollero Francesco Cecconi Yingyu Chen Lih-Shen Chin Augustine Choi Charleen T Chu Jongkyeong Chung Peter G H Clarke Robert S B Clark Steven G Clarke Corinne Clavé John L Cleveland Patrice Codogno María I Colombo Ana Coto-Montes James M Cregg Ana Maria Cuervo Jayanta Debnath Francesca Demarchi Patrick B Dennis Phillip A Dennis Vojo Deretic Rodney J Devenish Federica Di Sano J Fred Dice Marian Difiglia Savithramma Dinesh-Kumar Clark W Distelhorst Mojgan Djavaheri-Mergny Frank C Dorsey Wulf Dröge Michel Dron William A Dunn Michael Duszenko N Tony Eissa Zvulun Elazar Audrey Esclatine Eeva-Liisa Eskelinen László Fésüs Kim D Finley José M Fuentes Juan Fueyo Kozo Fujisaki Brigitte Galliot Fen-Biao Gao David A Gewirtz Spencer B Gibson Antje Gohla Alfred L Goldberg Ramon Gonzalez Cristina González-Estévez Sharon Gorski Roberta A Gottlieb Dieter Häussinger You-Wen He Kim Heidenreich Joseph A Hill Maria Høyer-Hansen Xun Hu Wei-Pang Huang Akiko Iwasaki Marja Jäättelä William T Jackson Xuejun Jiang Shengkan Jin Terje Johansen Jae U Jung Motoni Kadowaki Chanhee Kang Ameeta Kelekar David H Kessel Jan A K W Kiel Hong Pyo Kim Adi Kimchi Timothy J Kinsella Kirill Kiselyov Katsuhiko Kitamoto Erwin Knecht Masaaki Komatsu Eiki Kominami Seiji Kondo Attila L Kovács Guido Kroemer Chia-Yi Kuan Rakesh Kumar Mondira Kundu Jacques Landry Marianne Laporte Weidong Le Huan-Yao Lei Michael J Lenardo Beth Levine Andrew Lieberman Kah-Leong Lim Fu-Cheng Lin Willisa Liou Leroy F Liu Gabriel Lopez-Berestein Carlos López-Otín Bo Lu Kay F Macleod Walter Malorni Wim Martinet Ken Matsuoka Josef Mautner Alfred J Meijer Alicia Meléndez Paul Michels Giovanni Miotto Wilhelm P Mistiaen Noboru Mizushima Baharia Mograbi Iryna Monastyrska Michael N Moore Paula I Moreira Yuji Moriyasu Tomasz Motyl Christian Münz Leon O Murphy Naweed I Naqvi Thomas P Neufeld Ichizo Nishino Ralph A Nixon Takeshi Noda Bernd Nürnberg Michinaga Ogawa Nancy L Oleinick Laura J Olsen Bulent Ozpolat Shoshana Paglin Glen E Palmer Issidora Papassideri Miles Parkes David H Perlmutter George Perry Mauro Piacentini Ronit Pinkas-Kramarski Mark Prescott Tassula Proikas-Cezanne Nina Raben Abdelhaq Rami Fulvio Reggiori Bärbel Rohrer David C Rubinsztein Kevin M Ryan Junichi Sadoshima Hiroshi Sakagami Yasuyoshi Sakai Marco Sandri Chihiro Sasakawa Miklós Sass Claudio Schneider Per O Seglen Oleksandr Seleverstov Jeffrey Settleman John J Shacka Irving M Shapiro Andrei Sibirny Elaine C M Silva-Zacarin Hans-Uwe Simon Cristiano Simone Anne Simonsen Mark A Smith Katharina Spanel-Borowski Vickram Srinivas Meredith Steeves Harald Stenmark Per E Stromhaug Carlos S Subauste Seiichiro Sugimoto David Sulzer Toshihiko Suzuki Michele S Swanson Ira Tabas Fumihiko Takeshita Nicholas J Talbot Zsolt Tallóczy Keiji Tanaka Kozo Tanaka Isei Tanida Graham S Taylor J Paul Taylor Alexei Terman Gianluca Tettamanti Craig B Thompson Michael Thumm Aviva M Tolkovsky Sharon A Tooze Ray Truant Lesya V Tumanovska Yasuo Uchiyama Takashi Ueno Néstor L Uzcátegui Ida van der Klei Eva C Vaquero Tibor Vellai Michael W Vogel Hong-Gang Wang Paul Webster John W Wiley Zhijun Xi Gutian Xiao Joachim Yahalom Jin-Ming Yang George Yap Xiao-Ming Yin Tamotsu Yoshimori Li Yu Zhenyu Yue Michisuke Yuzaki Olga Zabirnyk Xiaoxiang Zheng Xiongwei Zhu Russell L Deter

Autophagy 2008 Feb 21;4(2):151-75. Epub 2007 Nov 21.

Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109-2216, USA.

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http://dx.doi.org/10.4161/auto.5338DOI Listing
February 2008

Purification capability of tobacco transformed with enzymes from a methylotrophic bacterium for formaldehyde.

Authors:
Ayako Sawada Takashi Oyabu Li-mei Chen Kun-zhi Li Norihito Hirai Hiroya Yurimoto Izumi Orita Yasuyoshi Sakai Nobuo Kato Katsura Izui

Int J Phytoremediation 2007 Nov-Dec;9(6):487-96

Graduate School of Regional Economic Systems, Kanazawa Seiryo University, Ishikawa, Japan.

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http://www.tandfonline.com/doi/abs/10.1080/15226510701709630
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February 2008

Bifunctional enzyme fusion of 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase.

Authors:
Izumi Orita Naoki Sakamoto Nobuo Kato Hiroya Yurimoto Yasuyoshi Sakai

Appl Microbiol Biotechnol 2007 Aug 23;76(2):439-45. Epub 2007 May 23.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, 606-8502 Kyoto, Japan.

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http://dx.doi.org/10.1007/s00253-007-1023-8DOI Listing
August 2007

Gene-tagging mutagenesis in the methylotrophic yeast Candida boidinii.

Authors:
Yu Sasano Hiroya Yurimoto Yasuyoshi Sakai

J Biosci Bioeng 2007 Jul;104(1):86-9

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Kyoto, Japan.

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http://dx.doi.org/10.1263/jbb.104.86DOI Listing
July 2007

Functions of PI4P and sterol glucoside are necessary for the synthesis of a nascent membrane structure during pexophagy.

Authors:
Shun-ichi Yamashita Masahide Oku Yasuyoshi Sakai

Autophagy 2007 Jan-Feb;3(1):35-7. Epub 2007 Jan 28.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.4161/auto.3311DOI Listing
April 2007

Novel acetone metabolism in a propane-utilizing bacterium, Gordonia sp. strain TY-5.

Authors:
Tetsuya Kotani Hiroya Yurimoto Nobuo Kato Yasuyoshi Sakai

J Bacteriol 2007 Feb 27;189(3):886-93. Epub 2006 Oct 27.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Kyoto 606-8502, Japan.

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http://jb.asm.org/cgi/doi/10.1128/JB.01054-06
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http://dx.doi.org/10.1128/JB.01054-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797311PMC
February 2007

Role of Vac8 in formation of the vacuolar sequestering membrane during micropexophagy.

Authors:
Masahide Oku Taku Nishimura Takeshi Hattori Yoshitaka Ano Shun-ichi Yamashita Yasuyoshi Sakai

Autophagy 2006 Oct-Dec;2(4):272-9. Epub 2006 Oct 30.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto, Japan.

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http://dx.doi.org/10.4161/auto.3135DOI Listing
January 2007

Pexophagy: autophagic degradation of peroxisomes.

Authors:
Yasuyoshi Sakai Masahide Oku Ida J van der Klei Jan A K W Kiel

Biochim Biophys Acta 2006 Dec 24;1763(12):1767-75. Epub 2006 Aug 24.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1016/j.bbamcr.2006.08.023DOI Listing
December 2006

The significance of peroxisomes in methanol metabolism in methylotrophic yeast.

Authors:
Ida J van der Klei Hiroya Yurimoto Yasuyoshi Sakai Marten Veenhuis

Biochim Biophys Acta 2006 Dec 1;1763(12):1453-62. Epub 2006 Sep 1.

Eukaryotic Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen, P.O. Box 14, NL-9750 AA Haren, The Netherlands.

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http://dx.doi.org/10.1016/j.bbamcr.2006.07.016DOI Listing
December 2006

Gene structure and regulation of alkane monooxygenases in propane-utilizing Mycobacterium sp. TY-6 and Pseudonocardia sp. TY-7.

Authors:
Tetsuya Kotani Yui Kawashima Hiroya Yurimoto Nobuo Kato Yasuyoshi Sakai

J Biosci Bioeng 2006 Sep;102(3):184-92

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Kyoto, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S138917230670649
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http://dx.doi.org/10.1263/jbb.102.184DOI Listing
September 2006

[Pexophagy and regulation of membrane dynamics by Atg proteins].

Authors:
Shun-ichi Yamashita Yasuyoshi Sakai

Tanpakushitsu Kakusan Koso 2006 Aug;51(10 Suppl):1474-9

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August 2006

The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.

Authors:
Izumi Orita Takaaki Sato Hiroya Yurimoto Nobuo Kato Haruyuki Atomi Tadayuki Imanaka Yasuyoshi Sakai

J Bacteriol 2006 Jul;188(13):4698-704

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Kyoto 606-8502, Japan.

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http://jb.asm.org/cgi/doi/10.1128/JB.00492-06
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http://dx.doi.org/10.1128/JB.00492-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1482999PMC
July 2006

Pexophagy: the selective autophagy of peroxisomes.

Authors:
William A Dunn James M Cregg Jan A K W Kiel Ida J van der Klei Masahide Oku Yasuyoshi Sakai Andrei A Sibirny Oleh V Stasyk Marten Veenhuis

Autophagy 2005 Jul 13;1(2):75-83. Epub 2005 Jul 13.

Department of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, Florida, USA.

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http://dx.doi.org/10.4161/auto.1.2.1737DOI Listing
July 2005