Yaomin Xu

Yaomin Xu

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Yaomin Xu

Yaomin Xu

Publications by authors named "Yaomin Xu"

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Performance of a Natural Language Processing Method to Extract Stone Composition From the Electronic Health Record.

Urology 2019 Jul 13. Epub 2019 Jul 13.

Department of Urology, Vanderbilt University Medical Center, Nashville, TN. Electronic address:

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http://dx.doi.org/10.1016/j.urology.2019.07.007DOI Listing
July 2019

Tumor genomic alterations in severe-combined immunodeficiency bare-lymphocyte syndrome genes are associated with high mutational burden and disproportional neo-antigen rates.

J Immunother Cancer 2019 May 7;7(1):123. Epub 2019 May 7.

Division of Hematology and Oncology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.

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http://dx.doi.org/10.1186/s40425-019-0584-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6503546PMC
May 2019

Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.

Authors:
Ayush Giri Jacklyn N Hellwege Jacob M Keaton Jihwan Park Chengxiang Qiu Helen R Warren Eric S Torstenson Csaba P Kovesdy Yan V Sun Otis D Wilson Cassianne Robinson-Cohen Christianne L Roumie Cecilia P Chung Kelly A Birdwell Scott M Damrauer Scott L DuVall Derek Klarin Kelly Cho Yu Wang Evangelos Evangelou Claudia P Cabrera Louise V Wain Rojesh Shrestha Brian S Mautz Elvis A Akwo Muralidharan Sargurupremraj Stéphanie Debette Michael Boehnke Laura J Scott Jian'an Luan Jing-Hua Zhao Sara M Willems Sébastien Thériault Nabi Shah Christopher Oldmeadow Peter Almgren Ruifang Li-Gao Niek Verweij Thibaud S Boutin Massimo Mangino Ioanna Ntalla Elena Feofanova Praveen Surendran James P Cook Savita Karthikeyan Najim Lahrouchi Chunyu Liu Nuno Sepúlveda Tom G Richardson Aldi Kraja Philippe Amouyel Martin Farrall Neil R Poulter Markku Laakso Eleftheria Zeggini Peter Sever Robert A Scott Claudia Langenberg Nicholas J Wareham David Conen Colin Neil Alexander Palmer John Attia Daniel I Chasman Paul M Ridker Olle Melander Dennis Owen Mook-Kanamori Pim van der Harst Francesco Cucca David Schlessinger Caroline Hayward Tim D Spector Marjo-Riitta Jarvelin Branwen J Hennig Nicholas J Timpson Wei-Qi Wei Joshua C Smith Yaomin Xu Michael E Matheny Edward E Siew Cecilia Lindgren Karl-Heinz Herzig George Dedoussis Joshua C Denny Bruce M Psaty Joanna M M Howson Patricia B Munroe Christopher Newton-Cheh Mark J Caulfield Paul Elliott J Michael Gaziano John Concato Peter W F Wilson Philip S Tsao Digna R Velez Edwards Katalin Susztak Christopher J O'Donnell Adriana M Hung Todd L Edwards

Nat Genet 2019 01 21;51(1):51-62. Epub 2018 Dec 21.

Biomedical Laboratory Research and Development, Tennessee Valley Healthcare System (626)/Vanderbilt University, Nashville, TN, USA.

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http://www.nature.com/articles/s41588-018-0303-9
Publisher Site
http://dx.doi.org/10.1038/s41588-018-0303-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6365102PMC
January 2019

Learning Opportunities for Drug Repositioning via GWAS and PheWAS Findings.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:237-246. Epub 2018 May 18.

Vanderbilt University, Nashville, TN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961790PMC
May 2018

Fulminant Myocarditis with Combination Immune Checkpoint Blockade.

N Engl J Med 2016 Nov;375(18):1749-1755

From the Departments of Medicine (D.B.J., J.M.B., M.H., I.P., M.R.A., T.L.B., J.R.B., D.A.S., E.J.P., M.A.P., D.M.R., J.A.S., J.J.M.), Cancer Biology (J.M.B., J.J.M.), Pathology, Microbiology, and Immunology (M.L.C., L.C.-O., R.D.H.), Biostatistics (Y.X.), Pharmacology (D.M.R.), and Biomedical Informatics (Y.X., D.M.R.), the Cardio-oncology Program (D.A.S., J.J.M.), the Breast Cancer Research Program (J.M.B.), and the Center for Quantitative Sciences (Y.X.), Vanderbilt University Medical Center, Nashville; the Department of Medicine (S.C.) and the Division of Neuroimmunology (S.C., I.J.K.), Beth Israel Deaconess Medical Center, the Departments of Medicine (B.A.O., C.E.S., J.G.S.) and Pathology (A.H.L.), Brigham and Women's Hospital, the Department of Genetics, Harvard Medical School (J.G., C.E.S., J.G.S.) - all in Boston; Howard Hughes Medical Institute, Chevy Chase, MD (C.E.S.); Bristol-Myers Squibb, New York (N.K., G.P., D.S.R., J.S.D.); Neon Therapeutics, Cambridge, MA (R.P.D.); and the Departments of Pathology (J.M.T., R.A.A.), Dermatology (J.M.T.), and Oncology (L.A.D.), Johns Hopkins University, Baltimore.

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http://dx.doi.org/10.1056/NEJMoa1609214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5247797PMC
November 2016

Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohn's disease-associated fibrosis.

Clin Epigenetics 2016 12;8:30. Epub 2016 Mar 12.

Department of Pathobiology, Cleveland Clinic Lerner Research Institute, 9500 Euclid Avenue/NC-22, Cleveland, OH 44195 USA.

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http://dx.doi.org/10.1186/s13148-016-0193-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4789277PMC
April 2016

Crossed cerebellar diaschisis after stroke identified noninvasively with cerebral blood flow-weighted arterial spin labeling MRI.

Eur J Radiol 2016 Jan 10;85(1):136-142. Epub 2015 Nov 10.

Department of Radiology and Radiological Sciences, Vanderbilt Medical Center, Nashville, TN, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ejrad.2015.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4698315PMC
January 2016

Methylome-wide Sequencing Detects DNA Hypermethylation Distinguishing Indolent from Aggressive Prostate Cancer.

Cell Rep 2015 Dec 25;13(10):2135-46. Epub 2015 Nov 25.

Department of Molecular Medicine, Cleveland Clinic Lerner College of Medicine, Case Western Reserve University, Cleveland, OH 44195, USA; Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.10.078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684962PMC
December 2015

Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation.

Bioinformatics 2015 Jan 5;31(1):84-93. Epub 2014 Sep 5.

Department of Biomedical Informatics, Department of Biostatistics and Center for Quantitative Sciences, Vanderbilt University, Nashville, TN 37232, Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH 44106, Department of Psychiatry and Department of Cancer Biology, Vanderbilt University, Nashville, TN 37212, USA Department of Biomedical Informatics, Department of Biostatistics and Center for Quantitative Sciences, Vanderbilt University, Nashville, TN 37232, Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH 44106, Department of Psychiatry and Department of Cancer Biology, Vanderbilt University, Nashville, TN 37212, USA Department of Biomedical Informatics, Department of Biostatistics and Center for Quantitative Sciences, Vanderbilt University, Nashville, TN 37232, Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH 44106, Department of Psychiatry and Department of Cancer Biology, Vanderbilt University, Nashville, TN 37212, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271146PMC
January 2015

Screening for SNPs with Allele-Specific Methylation based on Next-Generation Sequencing Data.

Stat Biosci 2013 May;5(1):179-197

Department of Quantitative Health Sciences, Cleveland Clinic.

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http://dx.doi.org/10.1007/s12561-013-9086-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661303PMC
May 2013

Unique DNA methylome profiles in CpG island methylator phenotype colon cancers.

Genome Res 2012 Feb 11;22(2):283-91. Epub 2011 Oct 11.

Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, Ohio 44195, USA.

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http://dx.doi.org/10.1101/gr.122788.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266035PMC
February 2012

Major differences in the responses of primary human leukocyte subsets to IFN-beta.

J Immunol 2010 Nov 18;185(10):5888-99. Epub 2010 Oct 18.

Department of Molecular Genetics, Cleveland Clinic Foundation, Cleveland, OH 44195, USA.

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http://dx.doi.org/10.4049/jimmunol.0902314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244975PMC
November 2010

Heterogeneous, longitudinally stable molecular signatures in response to interferon-beta.

Ann N Y Acad Sci 2009 Dec;1182:58-68

Neuroinflammation Research Center, Department of Neurosciences, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA.

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http://dx.doi.org/10.1111/j.1749-6632.2009.05068.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2842953PMC
December 2009

Gene expression changes in an animal model of in utero irradiation-induced Cortical Dysplasia.

Epileptic Disord 2009 Sep 1;11(3):232-43. Epub 2009 Sep 1.

Department of Neurosurgery, Cleveland Clinic, Cleveland, Ohio 44195, USA.

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http://dx.doi.org/10.1684/epd.2009.0270DOI Listing
September 2009

Breast-cancer stromal cells with TP53 mutations and nodal metastases.

N Engl J Med 2007 Dec;357(25):2543-51

Genomic Medicine Institute, Cleveland Clinic Foundation, Cleveland 44195, USA.

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http://dx.doi.org/10.1056/NEJMoa071825DOI Listing
December 2007

Reduced expression of autotaxin predicts survival in uveal melanoma.

Br J Ophthalmol 2007 Oct 2;91(10):1385-92. Epub 2007 May 2.

Department of Ophthalmic Oncology, Cole Eye Institute, Cleveland Clinic Foundation, 9500 Euclid Avenue, Cleveland, OH 44195, USA.

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http://dx.doi.org/10.1136/bjo.2007.116947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2001033PMC
October 2007

Microenvironmental genomic alterations and clinicopathological behavior in head and neck squamous cell carcinoma.

JAMA 2007 Jan;297(2):187-95

Genomic Medicine Institute and Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, Ohio, USA.

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http://dx.doi.org/10.1001/jama.297.2.187DOI Listing
January 2007

Liver failure is uncommon in adults receiving long-term parenteral nutrition.

JPEN J Parenter Enteral Nutr 2006 May-Jun;30(3):202-8

Department of Nutrition Support and Vascular Access, Cleveland Clinic Foundation, Cleveland, Ohio, USA.

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http://dx.doi.org/10.1177/0148607106030003202DOI Listing
September 2006

Atherosclerosis susceptibility loci identified from a strain intercross of apolipoprotein E-deficient mice via a high-density genome scan.

Arterioscler Thromb Vasc Biol 2006 Mar 22;26(3):597-603. Epub 2005 Dec 22.

Department of Cell Biology, Cleveland Clinic Foundation, Cleveland, Ohio, USA.

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http://dx.doi.org/10.1161/01.ATV.0000201044.33220.5cDOI Listing
March 2006

Transcriptome profile of macrophages from atherosclerosis-sensitive and atherosclerosis-resistant mice.

Mamm Genome 2006 Mar 3;17(3):220-9. Epub 2006 Mar 3.

Department of Cell Biology, Cleveland Clinic Foundation, Ohio , 44195, USA.

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http://dx.doi.org/10.1007/s00335-005-0099-7DOI Listing
March 2006