Publications by authors named "Yaniv Lubling"

19Publications

Metabolic Imaging Detects Resistance to PI3Kα Inhibition Mediated by Persistent FOXM1 Expression in ER Breast Cancer.

Cancer Cell 2020 Oct 24;38(4):516-533.e9. Epub 2020 Sep 24.

Cancer Research UK Cambridge Institute and Department of Oncology, Li Ka Shing Centre, University of Cambridge, Cambridge, UK; Cancer Research UK Cambridge Cancer Centre, Cambridge, UK; Department of Biochemistry, University of Cambridge, Cambridge UK. Electronic address:

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October 2020

MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions.

Genome Biol 2019 10 11;20(1):206. Epub 2019 Oct 11.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

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October 2019

Multiscale 3D Genome Rewiring during Mouse Neural Development.

Cell 2017 Oct;171(3):557-572.e24

Institute of Human Genetics, UMR 9002 of the CNRS and the Université de Montpellier, 34396 Montpellier, France. Electronic address:

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October 2017

Cell-cycle dynamics of chromosomal organization at single-cell resolution.

Nature 2017 07;547(7661):61-67

Department of Computer Science and Applied Mathematics, and Department of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.

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July 2017

Capturing pairwise and multi-way chromosomal conformations using chromosomal walks.

Nature 2016 12 30;540(7632):296-300. Epub 2016 Nov 30.

Department of Computer Science and Applied Mathematics and Department of Biological Regulation, Weizmann Institute, Rehovot 76100, Israel.

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December 2016

UMI-4C for quantitative and targeted chromosomal contact profiling.

Nat Methods 2016 08 4;13(8):685-91. Epub 2016 Jul 4.

Department of Computer Science and Applied Mathematics, Weizmann Institute, Rehovot, Israel.

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August 2016

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure.

Nature 2013 Oct 25;502(7469):59-64. Epub 2013 Sep 25.

Nuclear Dynamics Programme, The Babraham Institute, Cambridge, UK.

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October 2013

An integrated open framework for thermodynamics of reactions that combines accuracy and coverage.

Bioinformatics 2012 Aug 29;28(15):2037-44. Epub 2012 May 29.

Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.

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August 2012

Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters.

Genome Res 2011 Dec 18;21(12):2114-28. Epub 2011 Oct 18.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

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December 2011

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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December 2010

High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans.

Genome Res 2011 Feb 22;21(2):237-44. Epub 2010 Dec 22.

Department of Biology, Carolina Center for the Genome Sciences, University of North Carolina, Chapel Hill, North Carolina 27599-3280, USA.

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February 2011

p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy.

Genome Res 2010 Oct 17;20(10):1361-8. Epub 2010 Aug 17.

Department of Molecular Cell Biology, The Weizmann Institute, Rehovot 76100, Israel.

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October 2010

Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization.

Nat Genet 2009 Apr 1;41(4):438-45. Epub 2009 Mar 1.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

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April 2009

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals.

PLoS Comput Biol 2008 Nov 7;4(11):e1000216. Epub 2008 Nov 7.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

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November 2008