Publications by authors named "Yaniv Lubling"

19Publications

Metabolic Imaging Detects Resistance to PI3Kα Inhibition Mediated by Persistent FOXM1 Expression in ER Breast Cancer.

Authors:
Susana Ros Alan J Wright Paula D'Santos De-En Hu Richard L Hesketh Yaniv Lubling Dimitra Georgopoulou Giulia Lerda Dominique-Laurent Couturier Pedram Razavi Rapahel Pelossof Ankita S Batra Elizabeth Mannion David Y Lewis Alistair Martin Richard D Baird Mafalda Oliveira Leonora W de Boo Sabine C Linn Maurizio Scaltriti Oscar M Rueda Alejandra Bruna Carlos Caldas Kevin M Brindle

Cancer Cell 2020 Oct 24;38(4):516-533.e9. Epub 2020 Sep 24.

Cancer Research UK Cambridge Institute and Department of Oncology, Li Ka Shing Centre, University of Cambridge, Cambridge, UK; Cancer Research UK Cambridge Cancer Centre, Cambridge, UK; Department of Biochemistry, University of Cambridge, Cambridge UK. Electronic address:

View Article and Find Full Text PDF
October 2020

Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma.

Authors:
Hanjie Li Anne M van der Leun Ido Yofe Yaniv Lubling Dikla Gelbard-Solodkin Alexander C J van Akkooi Marlous van den Braber Elisa A Rozeman John B A G Haanen Christian U Blank Hugo M Horlings Eyal David Yael Baran Akhiad Bercovich Aviezer Lifshitz Ton N Schumacher Amos Tanay Ido Amit

Cell 2020 Apr;181(3):747

View Article and Find Full Text PDF
April 2020

MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions.

Authors:
Yael Baran Akhiad Bercovich Arnau Sebe-Pedros Yaniv Lubling Amir Giladi Elad Chomsky Zohar Meir Michael Hoichman Aviezer Lifshitz Amos Tanay

Genome Biol 2019 10 11;20(1):206. Epub 2019 Oct 11.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

View Article and Find Full Text PDF
October 2019

Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma.

Authors:
Hanjie Li Anne M van der Leun Ido Yofe Yaniv Lubling Dikla Gelbard-Solodkin Alexander C J van Akkooi Marlous van den Braber Elisa A Rozeman John B A G Haanen Christian U Blank Hugo M Horlings Eyal David Yael Baran Akhiad Bercovich Aviezer Lifshitz Ton N Schumacher Amos Tanay Ido Amit

Cell 2019 02 27;176(4):775-789.e18. Epub 2018 Dec 27.

Department of Immunology, Weizmann Institute, Rehovot, Israel. Electronic address:

View Article and Find Full Text PDF
February 2019

Single-cell characterization of haematopoietic progenitors and their trajectories in homeostasis and perturbed haematopoiesis.

Authors:
Amir Giladi Franziska Paul Yoni Herzog Yaniv Lubling Assaf Weiner Ido Yofe Diego Jaitin Nina Cabezas-Wallscheid Regine Dress Florent Ginhoux Andreas Trumpp Amos Tanay Ido Amit

Nat Cell Biol 2018 07 18;20(7):836-846. Epub 2018 Jun 18.

Department of Immunology, Weizmann Institute of Science, Rehovot, Israel.

View Article and Find Full Text PDF
July 2018

Multiscale 3D Genome Rewiring during Mouse Neural Development.

Authors:
Boyan Bonev Netta Mendelson Cohen Quentin Szabo Lauriane Fritsch Giorgio L Papadopoulos Yaniv Lubling Xiaole Xu Xiaodan Lv Jean-Philippe Hugnot Amos Tanay Giacomo Cavalli

Cell 2017 Oct;171(3):557-572.e24

Institute of Human Genetics, UMR 9002 of the CNRS and the Université de Montpellier, 34396 Montpellier, France. Electronic address:

View Article and Find Full Text PDF
October 2017

Cell-cycle dynamics of chromosomal organization at single-cell resolution.

Authors:
Takashi Nagano Yaniv Lubling Csilla Várnai Carmel Dudley Wing Leung Yael Baran Netta Mendelson Cohen Steven Wingett Peter Fraser Amos Tanay

Nature 2017 07;547(7661):61-67

Department of Computer Science and Applied Mathematics, and Department of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.

View Article and Find Full Text PDF
July 2017

Capturing pairwise and multi-way chromosomal conformations using chromosomal walks.

Authors:
Pedro Olivares-Chauvet Zohar Mukamel Aviezer Lifshitz Omer Schwartzman Noa Oded Elkayam Yaniv Lubling Gintaras Deikus Robert P Sebra Amos Tanay

Nature 2016 12 30;540(7632):296-300. Epub 2016 Nov 30.

Department of Computer Science and Applied Mathematics and Department of Biological Regulation, Weizmann Institute, Rehovot 76100, Israel.

View Article and Find Full Text PDF
December 2016

UMI-4C for quantitative and targeted chromosomal contact profiling.

Authors:
Omer Schwartzman Zohar Mukamel Noa Oded-Elkayam Pedro Olivares-Chauvet Yaniv Lubling Gilad Landan Shai Izraeli Amos Tanay

Nat Methods 2016 08 4;13(8):685-91. Epub 2016 Jul 4.

Department of Computer Science and Applied Mathematics, Weizmann Institute, Rehovot, Israel.

View Article and Find Full Text PDF
August 2016

Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell.

Authors:
Takashi Nagano Yaniv Lubling Eitan Yaffe Steven W Wingett Wendy Dean Amos Tanay Peter Fraser

Nat Protoc 2015 Dec 5;10(12):1986-2003. Epub 2015 Nov 5.

Nuclear Dynamics Programme, The Babraham Institute, Cambridge, UK.

View Article and Find Full Text PDF
December 2015

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure.

Authors:
Takashi Nagano Yaniv Lubling Tim J Stevens Stefan Schoenfelder Eitan Yaffe Wendy Dean Ernest D Laue Amos Tanay Peter Fraser

Nature 2013 Oct 25;502(7469):59-64. Epub 2013 Sep 25.

Nuclear Dynamics Programme, The Babraham Institute, Cambridge, UK.

View Article and Find Full Text PDF
October 2013

Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein.

Authors:
Einat Zalckvar Christina Paulus Desiree Tillo Alexandra Asbach-Nitzsche Yaniv Lubling Carla Winterling Nicholas Strieder Katrin Mücke Felicia Goodrum Eran Segal Michael Nevels

Proc Natl Acad Sci U S A 2013 Aug 22;110(32):13126-31. Epub 2013 Jul 22.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

View Article and Find Full Text PDF
August 2013

An integrated open framework for thermodynamics of reactions that combines accuracy and coverage.

Authors:
Elad Noor Arren Bar-Even Avi Flamholz Yaniv Lubling Dan Davidi Ron Milo

Bioinformatics 2012 Aug 29;28(15):2037-44. Epub 2012 May 29.

Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel.

View Article and Find Full Text PDF
August 2012

Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters.

Authors:
Danny Zeevi Eilon Sharon Maya Lotan-Pompan Yaniv Lubling Zohar Shipony Tali Raveh-Sadka Leeat Keren Michal Levo Adina Weinberger Eran Segal

Genome Res 2011 Dec 18;21(12):2114-28. Epub 2011 Oct 18.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

View Article and Find Full Text PDF
December 2011

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

View Article and Find Full Text PDF
December 2010

High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans.

Authors:
Sevinç Ercan Yaniv Lubling Eran Segal Jason D Lieb

Genome Res 2011 Feb 22;21(2):237-44. Epub 2010 Dec 22.

Department of Biology, Carolina Center for the Genome Sciences, University of North Carolina, Chapel Hill, North Carolina 27599-3280, USA.

View Article and Find Full Text PDF
February 2011

p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy.

Authors:
Efrat Lidor Nili Yair Field Yaniv Lubling Jonathan Widom Moshe Oren Eran Segal

Genome Res 2010 Oct 17;20(10):1361-8. Epub 2010 Aug 17.

Department of Molecular Cell Biology, The Weizmann Institute, Rehovot 76100, Israel.

View Article and Find Full Text PDF
October 2010

Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization.

Authors:
Yair Field Yvonne Fondufe-Mittendorf Irene K Moore Piotr Mieczkowski Noam Kaplan Yaniv Lubling Jason D Lieb Jonathan Widom Eran Segal

Nat Genet 2009 Apr 1;41(4):438-45. Epub 2009 Mar 1.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

View Article and Find Full Text PDF
April 2009

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals.

Authors:
Yair Field Noam Kaplan Yvonne Fondufe-Mittendorf Irene K Moore Eilon Sharon Yaniv Lubling Jonathan Widom Eran Segal

PLoS Comput Biol 2008 Nov 7;4(11):e1000216. Epub 2008 Nov 7.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

View Article and Find Full Text PDF
November 2008