Publications by authors named "Xutao Deng"

100Publications

Virome of Bat Guano from Nine Northern California Roosts.

J Virol 2020 Oct 28. Epub 2020 Oct 28.

Vitalant Research Institute, San Francisco, California, USA

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http://dx.doi.org/10.1128/JVI.01713-20DOI Listing
October 2020

Statistical analysis of single-copy assays when some observations are zero.

J Virus Erad 2019 Sep 18;5(3):167-173. Epub 2019 Sep 18.

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne and Royal Melbourne Hospital, Melbourne, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6816121PMC
September 2019

Viruses in Horses with Neurologic and Respiratory Diseases.

Viruses 2019 10 14;11(10). Epub 2019 Oct 14.

Vitalant Research Institute, San Francisco, CA 94118, USA.

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http://dx.doi.org/10.3390/v11100942DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6832430PMC
October 2019

Gut virome of mammals and birds reveals high genetic diversity of the family .

Virus Evol 2019 Jan 8;5(1):vez013. Epub 2019 Jun 8.

Department of Microbiology, School of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, Jiangsu, China.

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http://dx.doi.org/10.1093/ve/vez013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6555873PMC
January 2019

A novel picornavirus in feces of a rainbow lorikeet (Trichoglossus moluccanus) shows a close relationship to members of the genus Avihepatovirus.

Arch Virol 2019 Jul 13;164(7):1911-1914. Epub 2019 Apr 13.

Department of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, China.

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http://dx.doi.org/10.1007/s00705-019-04246-5DOI Listing
July 2019

Canine bufavirus in faeces and plasma of dogs with diarrhoea, China.

Emerg Microbes Infect 2019;8(1):245-247

a Shanghai Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology , Shanghai Jiao Tong University , Shanghai , People's Republic of China.

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http://dx.doi.org/10.1080/22221751.2018.1563457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6455112PMC
June 2019

Viral metagenomics reveals significant viruses in the genital tract of apparently healthy dairy cows.

Arch Virol 2019 Apr 19;164(4):1059-1067. Epub 2019 Feb 19.

Department of Microbiology, School of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.

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http://dx.doi.org/10.1007/s00705-019-04158-4DOI Listing
April 2019

Viral species richness and composition in young children with loose or watery stool in Ethiopia.

BMC Infect Dis 2019 Jan 14;19(1):53. Epub 2019 Jan 14.

Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, USA.

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http://dx.doi.org/10.1186/s12879-019-3674-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6332554PMC
January 2019

Nasal virome of dogs with respiratory infection signs include novel taupapillomaviruses.

Virus Genes 2019 Apr 10;55(2):191-197. Epub 2019 Jan 10.

Vitalant Research Institute, 270 Masonic Ave, San Francisco, CA, USA.

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http://dx.doi.org/10.1007/s11262-019-01634-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7088604PMC
April 2019

Asian black bear (Ursus thibetanus) picornavirus related to seal aquamavirus A.

Arch Virol 2019 Feb 20;164(2):653-656. Epub 2018 Dec 20.

Department of Swine Infectious Disease, Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China.

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http://dx.doi.org/10.1007/s00705-018-4101-6DOI Listing
February 2019

The fecal virome of red-crowned cranes.

Arch Virol 2019 Jan 17;164(1):3-16. Epub 2018 Sep 17.

Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1007/s00705-018-4037-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7086969PMC
January 2019

Virome of > 12 thousand Culex mosquitoes from throughout California.

Virology 2018 10 8;523:74-88. Epub 2018 Aug 8.

Blood Systems Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2018.07.029DOI Listing
October 2018

Full-length and defective enterovirus G genomes with distinct torovirus protease insertions are highly prevalent on a Chinese pig farm.

Arch Virol 2018 Sep 21;163(9):2471-2476. Epub 2018 May 21.

School of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.

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http://dx.doi.org/10.1007/s00705-018-3875-xDOI Listing
September 2018

Wuhan large pig roundworm virus identified in human feces in Brazil.

Virus Genes 2018 Jun 28;54(3):470-473. Epub 2018 Mar 28.

Institute of Tropical Medicine, University of São Paulo, Av. Dr. Enéas de Carvalho Aguiar, nº 470, São Paulo, SP, 05403-000, Brazil.

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http://dx.doi.org/10.1007/s11262-018-1557-0DOI Listing
June 2018

Plasma virome of cattle from forest region revealed diverse small circular ssDNA viral genomes.

Virol J 2018 01 15;15(1):11. Epub 2018 Jan 15.

Department of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China.

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http://dx.doi.org/10.1186/s12985-018-0923-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5769433PMC
January 2018

Mesenchymal stem cell-derived extracellular vesicles attenuate pulmonary vascular permeability and lung injury induced by hemorrhagic shock and trauma.

J Trauma Acute Care Surg 2018 02;84(2):245-256

From The Department of Laboratory Medicine (D.R.P., B.Y.M., S.L.G., A.T., S.P.), University of California at San Francisco; Blood Systems Research Institute (X.D., P.P.T., S.P.), San Francisco, California; Department of Pediatric Surgery (A.K.S.), McGovern Medical School, University of Texas Health Sciences Center at Houston, Houston, Texas; Cardiovascular Research Institute (R.H.C.), University of California at San Francisco, San Francisco, California; Department of Surgery (J.B.H.), University of Texas, Houston, Texas; and Department of Surgery (M.A.S.), Oregon Health & Science University, Portland, Oregon.

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http://dx.doi.org/10.1097/TA.0000000000001744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6378956PMC
February 2018

A novel polyomavirus from the nasal cavity of a giant panda (Ailuropoda melanoleuca).

Virol J 2017 10 27;14(1):207. Epub 2017 Oct 27.

Department of Microbiology, School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, 212013, China.

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http://dx.doi.org/10.1186/s12985-017-0867-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658932PMC
October 2017

Small Circular Rep-Encoding Single-Stranded DNA Genomes in Peruvian Diarrhea Virome.

Genome Announc 2017 Sep 21;5(38). Epub 2017 Sep 21.

Blood Systems Research Institute, San Francisco, California, USA

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http://dx.doi.org/10.1128/genomeA.00822-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5609404PMC
September 2017

Virome comparisons in wild-diseased and healthy captive giant pandas.

Microbiome 2017 08 7;5(1):90. Epub 2017 Aug 7.

Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94118, USA.

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http://dx.doi.org/10.1186/s40168-017-0308-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5545856PMC
August 2017

Densoviruses in oyster Crassostrea ariakensis.

Arch Virol 2017 Jul 24;162(7):2153-2157. Epub 2017 Mar 24.

School of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, 202103, Jiangsu, People's Republic of China.

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http://dx.doi.org/10.1007/s00705-017-3343-zDOI Listing
July 2017

Simultaneous estimation of detection sensitivity and absolute copy number from digital PCR serial dilution.

Comput Biol Chem 2017 Jun 1;68:1-5. Epub 2017 Feb 1.

Blood Systems Research Institute, San Francisco, CA 94118, USA; Department of Laboratory Medicine, University of California at San Francisco, San Francisco, CA 94107, USA. Electronic address:

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http://dx.doi.org/10.1016/j.compbiolchem.2017.01.015DOI Listing
June 2017

ENDEMIC INFECTION OF STRANDED SOUTHERN SEA OTTERS (ENHYDRA LUTRIS NEREIS) WITH NOVEL PARVOVIRUS, POLYOMAVIRUS, AND ADENOVIRUS.

J Wildl Dis 2017 07 13;53(3):532-542. Epub 2017 Feb 13.

2  Blood Systems Research Institute, 270 Masonic Avenue, San Francisco, California 94118, USA.

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http://dx.doi.org/10.7589/2016-04-082DOI Listing
July 2017

Virome of US bovine calf serum.

Biologicals 2017 Mar 15;46:64-67. Epub 2017 Jan 15.

Blood Systems Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.biologicals.2016.12.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654489PMC
March 2017

A novel bocavirus from domestic mink, China.

Virus Genes 2016 Dec 12;52(6):887-890. Epub 2016 Aug 12.

Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1007/s11262-016-1380-4DOI Listing
December 2016

A diverse group of small circular ssDNA viral genomes in human and non-human primate stools.

Virus Evol 2015 31;1(1):vev017. Epub 2015 Dec 31.

Blood Systems Research Institute, San Francisco, 270 Masonic Ave, San Francisco, CA 94118, USA, ; Department of laboratory Medicine, University of California at San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1093/ve/vev017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014484PMC
December 2015

Bunyaviruses are common in male and female Ixodes scapularis ticks in central Pennsylvania.

PeerJ 2016 11;4:e2324. Epub 2016 Aug 11.

Center for Infectious Disease Dynamics, Pennsylvania State University, University Park, PA, United States.

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http://dx.doi.org/10.7717/peerj.2324DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991847PMC
September 2016

A new densovirus in cerebrospinal fluid from a case of anti-NMDA-receptor encephalitis.

Arch Virol 2016 Nov 13;161(11):3231-5. Epub 2016 Aug 13.

Blood Systems Research Institute, San Francisco, CA, 94118, USA.

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http://dx.doi.org/10.1007/s00705-016-3002-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6550996PMC
November 2016

A Common Parvovirus in Deer from California, USA.

J Wildl Dis 2016 10 1;52(4):962-964. Epub 2016 Aug 1.

1 Blood Systems Research Institute, 270 Masonic Ave., San Francisco, California 94118, USA.

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http://dx.doi.org/10.7589/2015-12-337DOI Listing
October 2016

Identification of a novel human papillomavirus by metagenomic analysis of vaginal swab samples from pregnant women.

Virol J 2016 07 4;13:122. Epub 2016 Jul 4.

Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94118, USA.

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http://dx.doi.org/10.1186/s12985-016-0583-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943014PMC
July 2016

A new protoparvovirus in human fecal samples and cutaneous T cell lymphomas (mycosis fungoides).

Virology 2016 09 7;496:299-305. Epub 2016 Jul 7.

Blood Systems Research Institute, San Francisco, CA 94118, USA; Department of Laboratory Medicine, University of California at San Francisco, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2016.06.013DOI Listing
September 2016

Viral nucleic acids in human plasma pools.

Transfusion 2016 09 16;56(9):2248-55. Epub 2016 Jun 16.

Blood Systems Research Institute, San Francisco, California.

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http://dx.doi.org/10.1111/trf.13692DOI Listing
September 2016

A novel species of torque teno mini virus (TTMV) in gingival tissue from chronic periodontitis patients.

Sci Rep 2016 05 25;6:26739. Epub 2016 May 25.

Department of Preventive Dentistry, Ninth People's Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai Key Laboratory of Stomatology, Shanghai, China.

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http://dx.doi.org/10.1038/srep26739DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4879676PMC
May 2016

Bufavirus Protoparvovirus in feces of wild rats in China.

Virus Genes 2016 Feb 24;52(1):130-3. Epub 2015 Nov 24.

Department of Laboratory Medicine, Blood Systems Research Institute, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1007/s11262-015-1262-1DOI Listing
February 2016

Virome analysis of antiretroviral-treated HIV patients shows no correlation between T-cell activation and anelloviruses levels.

J Clin Virol 2015 Nov 8;72:106-13. Epub 2015 Oct 8.

Blood Systems Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jcv.2015.09.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4697764PMC
November 2015

The Fecal Virome of Children with Hand, Foot, and Mouth Disease that Tested PCR Negative for Pathogenic Enteroviruses.

PLoS One 2015 19;10(8):e0135573. Epub 2015 Aug 19.

Blood Systems Research Institute, San Francisco, California, United States of America; Department of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135573PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545796PMC
May 2016

Exploring the virome of diseased horses.

J Gen Virol 2015 Sep 4;96(9):2721-2733. Epub 2015 Jun 4.

Blood Systems Research Institute, San Francisco, CA, USA.

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http://dx.doi.org/10.1099/vir.0.000199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4635498PMC
September 2015

A gyrovirus infecting a sea bird.

Arch Virol 2015 Aug 4;160(8):2105-9. Epub 2015 Jun 4.

Blood Systems Research Institute, 270 Masonic Ave., San Francisco, CA, 94118, USA.

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http://dx.doi.org/10.1007/s00705-015-2468-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4657940PMC
August 2015

Local Virus Extinctions following a Host Population Bottleneck.

J Virol 2015 Aug 27;89(16):8152-61. Epub 2015 May 27.

Blood Systems Research Institute, San Francisco, California, USA Department of Laboratory Medicine, University of California at San Francisco, San Francisco, California, USA

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http://dx.doi.org/10.1128/JVI.00671-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524239PMC
August 2015

A new gyrovirus in human feces.

Virus Genes 2015 Aug 27;51(1):132-5. Epub 2015 May 27.

Blood Systems Research Institute, San Francisco, CA, 94118, USA.

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http://dx.doi.org/10.1007/s11262-015-1210-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4519424PMC
August 2015

Fresh frozen plasma and spray-dried plasma mitigate pulmonary vascular permeability and inflammation in hemorrhagic shock.

J Trauma Acute Care Surg 2015 Jun;78(6 Suppl 1):S7-S17

From the Blood Systems Research Institute (D.R.P., G.B., S.M.K., X.D., J.A.C., S.L.G., M.O.M., M.E.F., S.P.); and Department of Laboratory Medicine (M.O.M., S.P.), University of California San Francisco, San Francisco, California; Department of Surgery (Z.P.), University of Texas-Houston Medical School, Houston, Texas; Division of Critical Care Medicine (P.C.S.), Department of Pediatrics, Washington School of Medicine, St. Louis, Missouri; and Shock Trauma Center (R.K.), University of Maryland, Baltimore, Maryland.

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http://dx.doi.org/10.1097/TA.0000000000000630DOI Listing
June 2015

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage.

Virology 2015 Aug 1;482:98-104. Epub 2015 Apr 1.

Blood Systems Research Institute, San Francisco, CA 94118, USA; Department of Laboratory Medicine, University of California at San Francisco, San Francisco, CA 94118, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00426822150014
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http://dx.doi.org/10.1016/j.virol.2015.03.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461510PMC
August 2015

A pilot randomized trial of red blood cell transfusion for acute treatment of vaso-occlusive pain episodes in sickle cell anaemia.

Br J Haematol 2015 Oct 1;171(2):288-290. Epub 2015 Apr 1.

Children's Hospital & Research Center Oakland, Oakland, CA, USA.

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http://doi.wiley.com/10.1111/bjh.13390
Publisher Site
http://dx.doi.org/10.1111/bjh.13390DOI Listing
October 2015

A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.

J Virol 2015 May 4;89(10):5340-9. Epub 2015 Mar 4.

Blood Systems Research Institute, San Francisco, California, USA Department of Laboratory Medicine, University of California at San Francisco, San Francisco, California, USA

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http://dx.doi.org/10.1128/JVI.00064-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4442534PMC
May 2015