Xun Jia

Xun Jia

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Xun Jia

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Clinical implementation of AI technologies will require interpretable AI models.

Med Phys 2020 Jan 19;47(1):1-4. Epub 2019 Nov 19.

Department of Radiation Oncology, Duke University Medical Center, Durham, NC, 27710, USA.

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http://dx.doi.org/10.1002/mp.13891DOI Listing
January 2020

Brachytherapy Future Directions.

Semin Radiat Oncol 2020 01;30(1):94-106

Department of Physics, Engineering Physics & Optics and Cancer Research Center, Université Laval, Quebec City, QC, Canada; Department of Radiation Oncology, Research Center of CHU de Québec, Université Laval, Quebec City, QC, Canada.

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http://dx.doi.org/10.1016/j.semradonc.2019.09.001DOI Listing
January 2020

A new open-source GPU-based microscopic Monte Carlo simulation tool for the calculations of DNA damages caused by ionizing radiation --- Part I: Core algorithm and validation.

Med Phys 2020 Jan 23. Epub 2020 Jan 23.

innovative Technology Of Radiotherapy Computation and Hardware (iTORCH) laboratory, Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75287, USA.

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http://dx.doi.org/10.1002/mp.14037DOI Listing
January 2020

An introduction to deep learning in medical physics: advantages, potential, and challenges.

Phys Med Biol 2020 Jan 23. Epub 2020 Jan 23.

Department of Radiation Oncology, UT Southwestern Medical Center, 6363 Forest Park Rd. BL10.202G, MC9315, Dallas, Texas, 75390-9315, UNITED STATES.

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http://dx.doi.org/10.1088/1361-6560/ab6f51DOI Listing
January 2020

gPET: a GPU-based, accurate and efficient Monte Carlo simulation tool for PET.

Phys Med Biol 2019 Dec 13;64(24):245002. Epub 2019 Dec 13.

Department of Physics, University of Texas at Arlington, Arlington, TX 76019, United States of America.

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http://dx.doi.org/10.1088/1361-6560/ab5610DOI Listing
December 2019

Incorporating human and learned domain knowledge into training deep neural networks: A differentiable dose-volume histogram and adversarial inspired framework for generating Pareto optimal dose distributions in radiation therapy.

Med Phys 2019 Dec 10. Epub 2019 Dec 10.

Medical Artificial Intelligence and Automation (MAIA) Laboratory, Department of Radiation Oncology, UT Southwestern Medical Center, Dallas, TX, 75390, USA.

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http://dx.doi.org/10.1002/mp.13955DOI Listing
December 2019

A method to reconstruct intra-fractional liver motion in rotational radiotherapy using linear fiducial markers.

Phys Med Biol 2019 Nov 21;64(22):225013. Epub 2019 Nov 21.

Department of Physics, University of Texas Arlington, Arlington, TX 76019, United States of America.

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http://dx.doi.org/10.1088/1361-6560/ab4c0dDOI Listing
November 2019

A manifold learning regularization approach to enhance 3D CT image-based lung nodule classification.

Int J Comput Assist Radiol Surg 2019 Nov 25. Epub 2019 Nov 25.

Innovative Technology Of Radiotherapy Computations and Hardware (iTORCH) Laboratory, University of Texas Southwestern Medical Center, Dallas, TX, 75235, USA.

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http://dx.doi.org/10.1007/s11548-019-02097-8DOI Listing
November 2019

Optimal energy selection for proton stopping-power-ratio estimation using dual-energy CT-based monoenergetic imaging.

Phys Med Biol 2019 Oct 4;64(19):195015. Epub 2019 Oct 4.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, United States of America.

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http://dx.doi.org/10.1088/1361-6560/ab3decDOI Listing
October 2019

Deep-learning assisted automatic digitization of interstitial needles in 3D CT image based high dose-rate brachytherapy of gynecological cancer.

Phys Med Biol 2019 Oct 23;64(21):215003. Epub 2019 Oct 23.

Medical Artificial Intelligence and Automation (MAIA) Lab, University of Texas Southwestern Medical Center, Dallas, TX 75235, United States of America. Innovative Technology Of Radiotherapy Computation and Hardware (iTORCH) Lab, University of Texas Southwestern Medical Center, Dallas, TX 75235, United States of America. Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75235, United States of America.

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http://dx.doi.org/10.1088/1361-6560/ab3fcbDOI Listing
October 2019

Dosimetric evaluation of 4D-CBCT reconstructed by Simultaneous Motion Estimation and Image Reconstruction (SMEIR) for carbon ion therapy of lung cancer.

Med Phys 2019 Sep 31;46(9):4087-4094. Epub 2019 Jul 31.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.

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http://dx.doi.org/10.1002/mp.13706DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6739143PMC
September 2019

Deep-learning-assisted automatic digitization of applicators in 3D CT image-based high-dose-rate brachytherapy of gynecological cancer.

Brachytherapy 2019 Nov - Dec;18(6):841-851. Epub 2019 Jul 22.

Innovation Technology of Radiotherapy Computation and Hardware (iTORCH) Lab, University of Texas Southwestern Medical Center, Dallas, TX; Medical Artificial Intelligence and Automation (MAIA) Lab, University of Texas Southwestern Medical Center, Dallas, TX; Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX. Electronic address:

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http://dx.doi.org/10.1016/j.brachy.2019.06.003DOI Listing
July 2019

Comparison of three undersampling approaches in computed tomography reconstruction.

Quant Imaging Med Surg 2019 Jul;9(7):1229-1241

Innovative Technology of Radiotherapy Computations and Hardware (iTORCH) Laboratory, Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA.

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http://dx.doi.org/10.21037/qims.2019.07.07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6685809PMC
July 2019

Systematic analysis of the impact of imaging noise on dual-energy CT-based proton stopping power ratio estimation.

Med Phys 2019 May 1;46(5):2251-2263. Epub 2019 Apr 1.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.

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http://dx.doi.org/10.1002/mp.13493DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6510613PMC
May 2019

Intelligent inverse treatment planning via deep reinforcement learning, a proof-of-principle study in high dose-rate brachytherapy for cervical cancer.

Phys Med Biol 2019 05 29;64(11):115013. Epub 2019 May 29.

Innovative Technology Of Radiotherapy Computation and Hardware (iTORCH) Laboratory, Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75287, United States of America. Medical Artificial Intelligence and Automation (MAIA) Laboratory, Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75287, United States of America.

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http://dx.doi.org/10.1088/1361-6560/ab18bfDOI Listing
May 2019

Robust optimization for intensity-modulated proton therapy with soft spot sensitivity regularization.

Med Phys 2019 Mar 21;46(3):1408-1425. Epub 2019 Jan 21.

Department of Radiation Oncology, University of California-Los Angeles, Los Angeles, CA, 90095, USA.

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http://doi.wiley.com/10.1002/mp.13344
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http://dx.doi.org/10.1002/mp.13344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581199PMC
March 2019

A feasibility study for predicting optimal radiation therapy dose distributions of prostate cancer patients from patient anatomy using deep learning.

Sci Rep 2019 Jan 31;9(1):1076. Epub 2019 Jan 31.

Medical Artificial Intelligence and Automation Laboratory, Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.

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http://dx.doi.org/10.1038/s41598-018-37741-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355802PMC
January 2019

Multienergy element-resolved cone beam CT (MEER-CBCT) realized on a conventional CBCT platform.

Med Phys 2018 Oct 22;45(10):4461-4470. Epub 2018 Sep 22.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.

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http://doi.wiley.com/10.1002/mp.13169
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http://dx.doi.org/10.1002/mp.13169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6553481PMC
October 2018

Data correlation based noise level estimation for cone beam projection data.

J Xray Sci Technol 2017 ;25(6):907-926

Institute of Image Processing and Pattern Recognition, Xi'an Jiaotong University, Xi'an, China.

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http://dx.doi.org/10.3233/XST-17266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714667PMC
August 2018

Dosimetric comparison of rectal-sparing capabilities of rectal balloon vs injectable spacer gel in stereotactic body radiation therapy for prostate cancer: lessons learned from prospective trials.

Med Dosim 2017 Winter;42(4):341-347. Epub 2017 Jul 31.

Department of Radiation Oncology, Simmons Comprehensive Cancer Center at the University of Texas Southwestern Medical Center, Dallas, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.meddos.2017.07.002DOI Listing
August 2018

MULTI-ENERGY CONE-BEAM CT RECONSTRUCTION WITH A SPATIAL SPECTRAL NONLOCAL MEANS ALGORITHM.

SIAM J Imaging Sci 2018 8;11(2):1205-1229. Epub 2018 May 8.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75235, USA.

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https://epubs.siam.org/doi/10.1137/17M1123237
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http://dx.doi.org/10.1137/17M1123237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173488PMC
May 2018

Material elemental decomposition in dual and multi-energy CT via a sparsity-dictionary approach for proton stopping power ratio calculation.

Med Phys 2018 Apr 23;45(4):1491-1503. Epub 2018 Feb 23.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75287, USA.

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http://dx.doi.org/10.1002/mp.12796DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904041PMC
April 2018

[Effects of Environmental Factors on the Synergy of Functional Bacteria in Completely Autotrophic Granular Sludge].

Huan Jing Ke Xue 2018 Apr;39(4):1756-1762

School of Environmental Science and Technology, Suzhou University of Science and Technology, Suzhou 215009, China.

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http://dx.doi.org/10.13227/j.hjkx.201708251DOI Listing
April 2018

Physics Model-Based Scatter Correction in Multi-Source Interior Computed Tomography.

IEEE Trans Med Imaging 2018 02 17;37(2):349-360. Epub 2017 Aug 17.

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http://dx.doi.org/10.1109/TMI.2017.2741259DOI Listing
February 2018

Iterative reconstruction with boundary detection for carbon ion computed tomography.

Phys Med Biol 2018 02 26;63(5):055002. Epub 2018 Feb 26.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75235, United States of America.

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http://dx.doi.org/10.1088/1361-6560/aaac0fDOI Listing
February 2018

Full Monte Carlo-Based Biologic Treatment Plan Optimization System for Intensity Modulated Carbon Ion Therapy on Graphics Processing Unit.

Int J Radiat Oncol Biol Phys 2018 01 12;100(1):235-243. Epub 2017 Sep 12.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Texas. Electronic address:

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http://dx.doi.org/10.1016/j.ijrobp.2017.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5736444PMC
January 2018

A review of GPU-based medical image reconstruction.

Phys Med 2017 Oct 5;42:76-92. Epub 2017 Sep 5.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, 2280 Inwood Rd., MC 9303, Dallas, TX 75390, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ejmp.2017.07.024DOI Listing
October 2017

Optimization of the geometry and speed of a moving blocker system for cone-beam computed tomography scatter correction.

Med Phys 2017 Sep;44(9):e215-e229

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75235, USA.

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http://dx.doi.org/10.1002/mp.12326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619659PMC
September 2017

Anomalous Acoustic Plasmon Mode from Topologically Protected States.

Phys Rev Lett 2017 Sep 28;119(13):136805. Epub 2017 Sep 28.

Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China.

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http://dx.doi.org/10.1103/PhysRevLett.119.136805DOI Listing
September 2017

Initial development of goCMC: a GPU-oriented fast cross-platform Monte Carlo engine for carbon ion therapy.

Phys Med Biol 2017 05 31;62(9):3682-3699. Epub 2017 Jan 31.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, United States of America.

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http://stacks.iop.org/0031-9155/62/i=9/a=3682?key=crossref.c
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http://dx.doi.org/10.1088/1361-6560/aa5d43DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5730973PMC
May 2017

Accelerated Monte Carlo simulation on the chemical stage in water radiolysis using GPU.

Phys Med Biol 2017 04 21;62(8):3081-3096. Epub 2017 Mar 21.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, United States of America.

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http://dx.doi.org/10.1088/1361-6560/aa6246DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870909PMC
April 2017

Moving GPU-OpenCL-based Monte Carlo dose calculation toward clinical use: Automatic beam commissioning and source sampling for treatment plan dose calculation.

J Appl Clin Med Phys 2017 Mar 16;18(2):69-84. Epub 2017 Feb 16.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.

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http://dx.doi.org/10.1002/acm2.12049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5689963PMC
March 2017

A new approach to integrate GPU-based Monte Carlo simulation into inverse treatment plan optimization for proton therapy.

Phys Med Biol 2017 01 17;62(1):289-305. Epub 2016 Dec 17.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390-8542, USA. Department of Engineering Physics, Key Laboratory of Particle & Radiation Imaging (Tsinghua University), Ministry of Education, Tsinghua University, Beijing 10084, People's Republic of China.

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http://dx.doi.org/10.1088/1361-6560/62/1/289DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5206994PMC
January 2017

X-ray scatter correction for multi-source interior computed tomography.

Med Phys 2017 Jan;44(1):71-83

Department of Biomedical Engineering and Mechanics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.

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http://dx.doi.org/10.1002/mp.12022DOI Listing
January 2017

Online dosimetric evaluation of larynx SBRT: A pilot study to assess the necessity of adaptive replanning.

J Appl Clin Med Phys 2017 Jan 22;18(1):157-163. Epub 2016 Dec 22.

Department of Radiation Oncology, University of Texas Southwestern School of Medicine, Dallas, TX, USA.

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http://dx.doi.org/10.1002/acm2.12019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5689891PMC
January 2017

New concept on an integrated interior magnetic resonance imaging and medical linear accelerator system for radiation therapy.

J Med Imaging (Bellingham) 2017 Jan 2;4(1):015004. Epub 2017 Mar 2.

Biomedical Imaging Center , Rensselaer Polytechnic Institute, Troy, New York, United States.

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http://dx.doi.org/10.1117/1.JMI.4.1.015004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333765PMC
January 2017

3D-2D Deformable Image Registration Using Feature-Based Nonuniform Meshes.

Biomed Res Int 2016 25;2016:4382854. Epub 2016 Feb 25.

University of Texas Southwestern Medical Center, Dallas, TX 75235, USA.

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http://www.hindawi.com/journals/bmri/2016/4382854/
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http://dx.doi.org/10.1155/2016/4382854DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785510PMC
December 2016

Recent developments and comprehensive evaluations of a GPU-based Monte Carlo package for proton therapy.

Phys Med Biol 2016 10 3;61(20):7347-7362. Epub 2016 Oct 3.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.

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http://dx.doi.org/10.1088/0031-9155/61/20/7347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378691PMC
October 2016

Dosimetric benefit of adaptive re-planning in pancreatic cancer stereotactic body radiotherapy.

Med Dosim 2015 19;40(4):318-24. Epub 2015 May 19.

Center for Advanced Radiotherapy Technologies University of California San Diego, La Jolla, CA; Department of Radiation Oncology, University of California San Diego, La Jolla, CA. Electronic address:

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http://dx.doi.org/10.1016/j.meddos.2015.04.002DOI Listing
September 2016

Investigation on using high-energy proton beam for total body irradiation (TBI).

J Appl Clin Med Phys 2016 09 8;17(5):90-98. Epub 2016 Sep 8.

Robert Wood Johnson University Hospital, The Cancer Institution of New Jersey-Rutgers University.

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http://dx.doi.org/10.1120/jacmp.v17i5.6223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5874114PMC
September 2016

Modeling parameterized geometry in GPU-based Monte Carlo particle transport simulation for radiotherapy.

Phys Med Biol 2016 08 18;61(15):5851-67. Epub 2016 Jul 18.

Department of Radiation Oncology, University of Southwestern Medical Center, Dallas, TX 75390, USA.

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http://dx.doi.org/10.1088/0031-9155/61/15/5851DOI Listing
August 2016

Surface-ligand effect on radiosensitization of ultrasmall luminescent gold nanoparticles.

J Innov Opt Health Sci 2016 Jul 13;9(4):16420031-16420038. Epub 2016 May 13.

Department of Chemistry and Biochemistry, The University of Texas at Dallas, 800 W. Campbell Rd., Richardson, TX 75080, USA.

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http://dx.doi.org/10.1142/S1793545816420037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5639719PMC
July 2016

Patient-specific dosimetric endpoints based treatment plan quality control in radiotherapy.

Phys Med Biol 2015 Nov 8;60(21):8213-27. Epub 2015 Oct 8.

Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, 510515, People's Republic of China. Department of Radiation Oncology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.

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http://dx.doi.org/10.1088/0031-9155/60/21/8213DOI Listing
November 2015

A GPU OpenCL based cross-platform Monte Carlo dose calculation engine (goMC).

Phys Med Biol 2015 Oct 9;60(19):7419-35. Epub 2015 Sep 9.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.

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http://stacks.iop.org/0031-9155/60/i=19/a=7419?key=crossref.
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http://dx.doi.org/10.1088/0031-9155/60/19/7419DOI Listing
October 2015

An analytic linear accelerator source model for GPU-based Monte Carlo dose calculations.

Phys Med Biol 2015 Oct 29;60(20):7941-67. Epub 2015 Sep 29.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.

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http://dx.doi.org/10.1088/0031-9155/60/20/7941DOI Listing
October 2015

High resolution electron energy loss spectroscopy with two-dimensional energy and momentum mapping.

Rev Sci Instrum 2015 Aug;86(8):083902

Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China.

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http://dx.doi.org/10.1063/1.4928215DOI Listing
August 2015

Multi-GPU implementation of a VMAT treatment plan optimization algorithm.

Med Phys 2015 Jun;42(6):2841-52

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Texas 75390.

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http://dx.doi.org/10.1118/1.4919742DOI Listing
June 2015

A practical cone-beam CT scatter correction method with optimized Monte Carlo simulations for image-guided radiation therapy.

Phys Med Biol 2015 May 10;60(9):3567-87. Epub 2015 Apr 10.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75235, USA. Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People's Republic of China.

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http://dx.doi.org/10.1088/0031-9155/60/9/3567DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4409575PMC
May 2015

A method for volumetric imaging in radiotherapy using single x-ray projection.

Med Phys 2015 May;42(5):2498-509

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Texas 75235.

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http://dx.doi.org/10.1118/1.4918577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4409629PMC
May 2015

A new Monte Carlo-based treatment plan optimization approach for intensity modulated radiation therapy.

Phys Med Biol 2015 Apr 17;60(7):2903-19. Epub 2015 Mar 17.

Key Laboratory of Particle & Radiation Imaging (Tsinghua University), Ministry of Education, Department of Engineering Physics, Tsinghua University, Beijing, 10084, People's Republic of China. Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390-8542, USA.

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http://dx.doi.org/10.1088/0031-9155/60/7/2903DOI Listing
April 2015

A segmentation and point-matching enhanced efficient deformable image registration method for dose accumulation between HDR CT images.

Phys Med Biol 2015 Apr 19;60(7):2981-3002. Epub 2015 Mar 19.

Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People's Republic of China.

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http://dx.doi.org/10.1088/0031-9155/60/7/2981DOI Listing
April 2015

Point/counterpoint. GPU technology is the hope for near real-time Monte Carlo dose calculations.

Med Phys 2015 Apr;42(4):1474-6

Nuclear Engineering Program, Rensselaer Polytechnic Institute, Troy, New York 12180 (Tel: 518-276-4014; E-mail:

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http://dx.doi.org/10.1118/1.4903901DOI Listing
April 2015

A deformable head and neck phantom with in-vivo dosimetry for adaptive radiotherapy quality assurance.

Med Phys 2015 Apr;42(4):1490-7

Center for Advanced Radiotherapy Technologies and Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, California 92037-0843.

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http://doi.wiley.com/10.1118/1.4908205
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http://dx.doi.org/10.1118/1.4908205DOI Listing
April 2015

Validation of a GPU-based Monte Carlo code (gPMC) for proton radiation therapy: clinical cases study.

Phys Med Biol 2015 Mar 26;60(6):2257-69. Epub 2015 Feb 26.

Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1088/0031-9155/60/6/2257DOI Listing
March 2015

Epithelial innate immune response to Acinetobacter baumannii challenge.

Infect Immun 2014 Nov 11;82(11):4458-65. Epub 2014 Aug 11.

Department of Biological Sciences, School of Dental Medicine, Case Western Reserve University, Cleveland, Ohio, USA

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http://dx.doi.org/10.1128/IAI.01897-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249312PMC
November 2014

Automatic commissioning of a GPU-based Monte Carlo radiation dose calculation code for photon radiotherapy.

Phys Med Biol 2014 Nov 8;59(21):6467-86. Epub 2014 Oct 8.

Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.

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http://dx.doi.org/10.1088/0031-9155/59/21/6467DOI Listing
November 2014

Reconstructing cone-beam CT with spatially varying qualities for adaptive radiotherapy: a proof-of-principle study.

Phys Med Biol 2014 Oct 26;59(20):6251-66. Epub 2014 Sep 26.

Department of Radiation Oncology, UT Southwestern Medical Center, Dallas, TX 75390, USA. Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, 510515, People's Republic of China.

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http://dx.doi.org/10.1088/0031-9155/59/20/6251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4197814PMC
October 2014

A hybrid reconstruction algorithm for fast and accurate 4D cone-beam CT imaging.

Med Phys 2014 Jul;41(7):071903

Department of Radiation Oncology, The University of Texas, Southwestern Medical Center, Dallas, Texas 75390.

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http://dx.doi.org/10.1118/1.4881326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4187347PMC
July 2014

A DVH-guided IMRT optimization algorithm for automatic treatment planning and adaptive radiotherapy replanning.

Med Phys 2014 Jun;41(6):061711

Department of Radiation Medicine and Applied Sciences and Center for Advanced Radiotherapy Technologies, University of California San Diego, La Jolla, California 92037-0843 and Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-8542.

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June 2014

A multicriteria framework with voxel-dependent parameters for radiotherapy treatment plan optimization.

Med Phys 2014 Apr;41(4):041705

Center for Advanced Radiotherapy Technologies and Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, California 92037-0843.

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April 2014

Comprehensive evaluations of cone-beam CT dose in image-guided radiation therapy via GPU-based Monte Carlo simulations.

Phys Med Biol 2014 Mar 20;59(5):1239-53. Epub 2014 Feb 20.

Center for Advanced Radiotherapy Technologies, University of California San Diego, La Jolla, CA 92037-0843, USA. Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA 92037-0843, USA.

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March 2014

GPU-based high-performance computing for radiation therapy.

Phys Med Biol 2014 Feb 3;59(4):R151-82. Epub 2014 Feb 3.

Deparment of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4003902PMC
February 2014

Automatic treatment plan re-optimization for adaptive radiotherapy guided with the initial plan DVHs.

Phys Med Biol 2013 Dec 4;58(24):8725-38. Epub 2013 Dec 4.

Department of Radiation Medicine and Applied Sciences, Center for Advanced Radiotherapy Technologies and University of California San Diego, La Jolla, CA 92037-0843, USA. Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, 510515, People's Republic of China.

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December 2013

Deformable image registration of CT and truncated cone-beam CT for adaptive radiation therapy.

Phys Med Biol 2013 Nov 30;58(22):7979-93. Epub 2013 Oct 30.

Center for Advanced Radiotherapy Technologies and Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA 92037-0843, USA. Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People's Republic of China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3884089PMC
November 2013

Human β-defensin-3 structure motifs that are important in CXCR4 antagonism.

FEBS J 2013 Jul 7;280(14):3365-75. Epub 2013 Jun 7.

Department of Biological Sciences, School of Dental Medicine, Case Western Reserve University, Cleveland, OH 44106-4905, USA.

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http://dx.doi.org/10.1111/febs.12328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3831652PMC
July 2013

Progressive cone beam CT dose control in image-guided radiation therapy.

Med Phys 2013 Jun;40(6):060701

Center for Advanced Radiotherapy Technologies and Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, California 92037-0843, USA.

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http://dx.doi.org/10.1118/1.4804215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3669143PMC
June 2013

GPU-based Monte Carlo radiotherapy dose calculation using phase-space sources.

Phys Med Biol 2013 Jun 4;58(12):4341-56. Epub 2013 Jun 4.

Department of Physics and Astronomy, University of Victoria, PO Box 3055, STN CSC, Victoria, British Columbia V8W 3P6, Canada.

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June 2013

Joint CT/CBCT deformable registration and CBCT enhancement for cancer radiotherapy.

Med Image Anal 2013 Apr 4;17(3):387-400. Epub 2013 Feb 4.

School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3640424PMC
April 2013

A hybrid metal artifact reduction algorithm for x-ray CT.

Med Phys 2013 Apr;40(4):041910

Institute of Image Processing and Pattern Recognition, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China.

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April 2013

Extracting respiratory signals from thoracic cone beam CT projections.

Phys Med Biol 2013 Mar 11;58(5):1447-64. Epub 2013 Feb 11.

Center for Advanced Radiotherapy Technologies and Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA 92037-0843, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022850PMC
March 2013

Effect of statistical fluctuation in Monte Carlo based photon beam dose calculation on gamma index evaluation.

Phys Med Biol 2013 Mar 27;58(6):1839-53. Epub 2013 Feb 27.

Center for Advanced Radiotherapy Technologies, Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA 92037-0843, USA.

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March 2013

A contour-guided deformable image registration algorithm for adaptive radiotherapy.

Phys Med Biol 2013 Mar 27;58(6):1889-901. Epub 2013 Feb 27.

Center for Advanced Radiotherapy Technologies and Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA 92037-0843, USA.

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March 2013

GPU-based fast Monte Carlo dose calculation for proton therapy.

Phys Med Biol 2012 Dec 6;57(23):7783-97. Epub 2012 Nov 6.

Department of Radiation Medicine and Applied Sciences, Center for Advanced Radiotherapy Technologies, University of California San Diego, La Jolla, CA 92037, USA.

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http://stacks.iop.org/0031-9155/57/i=23/a=7783?key=crossref.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4474737PMC
December 2012

Optimal surface marker locations for tumor motion estimation in lung cancer radiotherapy.

Phys Med Biol 2012 Dec 23;57(24):8201-15. Epub 2012 Nov 23.

Department of Mathematics, The University of Arizona, Tucson, AZ 85721-0089, USA.

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December 2012

A GPU tool for efficient, accurate, and realistic simulation of cone beam CT projections.

Med Phys 2012 Dec;39(12):7368-78

Department of Radiation Medicine and Applied Sciences, University of California, San Diego, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1118/1.4766436DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3523889PMC
December 2012

CT to cone-beam CT deformable registration with simultaneous intensity correction.

Phys Med Biol 2012 Nov 3;57(21):6807-26. Epub 2012 Oct 3.

Center for Advanced Radiotherapy Technologies, Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA 92037-0843, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3495243PMC
November 2012

Relationship between x-ray illumination field size and flat field intensity and its impacts on x-ray imaging.

Med Phys 2012 Oct;39(10):5901-9

The George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461050PMC
October 2012

Four-dimensional cone beam CT reconstruction and enhancement using a temporal nonlocal means method.

Med Phys 2012 Sep;39(9):5592-602

Department of Radiation Medicine and Applied Sciences, University of California San Diego, La Jolla, CA 92037, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436920PMC
September 2012

A new column-generation-based algorithm for VMAT treatment plan optimization.

Phys Med Biol 2012 Jul 22;57(14):4569-88. Epub 2012 Jun 22.

Department of Industrial and Operations Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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July 2012

SU-E-T-476: GPU-Based Monte Carlo Radiotherapy Dose Calculation Using Phase- Space Sources.

Med Phys 2012 Jun;39(6Part17):3814

University of California, San Diego, La Jolla, CA.

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June 2012

A comprehensive study on the relationship between the image quality and imaging dose in low-dose cone beam CT.

Phys Med Biol 2012 Apr;57(7):2063-80

Center for Advanced Radiotherapy Technologies and Department of Radiation Medicine and Applied Sciences, University of California, San Diego, La Jolla, CA 92037-0843, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352686PMC
April 2012

Fast Monte Carlo simulation for patient-specific CT/CBCT imaging dose calculation.

Phys Med Biol 2012 Feb 6;57(3):577-90. Epub 2012 Jan 6.

Center for Advanced Radiotherapy Technologies and Department of Radiation Oncology, University of California San Diego, La Jolla, CA 92037-0843, USA.

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February 2012

GPU-based fast Monte Carlo simulation for radiotherapy dose calculation.

Phys Med Biol 2011 Nov 21;56(22):7017-31. Epub 2011 Oct 21.

Center for Advanced Radiotherapy Technologies and Department of Radiation Oncology, University of California San Diego, La Jolla, CA 92037-0843, USA.

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http://dx.doi.org/10.1088/0031-9155/56/22/002DOI Listing
November 2011

Beam orientation optimization for intensity modulated radiation therapy using adaptive l(2,1)-minimization.

Phys Med Biol 2011 Oct 2;56(19):6205-22. Epub 2011 Sep 2.

Center for Advanced Radiotherapy Technologies and Department of Radiation Oncology, University of California San Diego, La Jolla, CA 92037-0843, USA.

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http://dx.doi.org/10.1088/0031-9155/56/19/004DOI Listing
October 2011

Low-dose CT reconstruction via edge-preserving total variation regularization.

Phys Med Biol 2011 Sep 22;56(18):5949-67. Epub 2011 Aug 22.

Department of Biomedical Engineering, Graduate School at Shenzhen, Tsinghua University, Shenzhen, Guangdong 518055, People's Republic of China.

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http://dx.doi.org/10.1088/0031-9155/56/18/011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4026331PMC
September 2011

On a PCA-based lung motion model.

Phys Med Biol 2011 Sep 24;56(18):6009-30. Epub 2011 Aug 24.

Department of Radiation Oncology and Center for Advanced Radiotherapy Technologies, University of California San Diego, 3855 Health Sciences Dr, La Jolla, CA 92037-0843, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3915048PMC
September 2011