Xueqiu Lin

Xueqiu Lin

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Xueqiu Lin

Xueqiu Lin

Publications by authors named "Xueqiu Lin"

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13Publications

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CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization.

Cell 2018 11 11;175(5):1405-1417.e14. Epub 2018 Oct 11.

Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Chemical and Systems Biology, Stanford University, Stanford, CA 94305, USA; Stanford ChEM-H, Stanford University, Stanford, CA 94305, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183118
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http://dx.doi.org/10.1016/j.cell.2018.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239909PMC
November 2018

CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming.

Cell Stem Cell 2018 11 11;23(5):758-771.e8. Epub 2018 Oct 11.

Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Chemical and Systems Biology, Stanford University, Stanford, CA 94305, USA; Stanford ChEM-H, Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2018.09.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214761PMC
November 2018

CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens.

Genome Biol 2018 10 8;19(1):159. Epub 2018 Oct 8.

Department of Bioengineering, Stanford University, 443 Via Ortega, Stanford, 94305, USA.

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https://genomebiology.biomedcentral.com/articles/10.1186/s13
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http://dx.doi.org/10.1186/s13059-018-1538-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6176515PMC
October 2018

Homeobox oncogene activation by pan-cancer DNA hypermethylation.

Genome Biol 2018 08 10;19(1):108. Epub 2018 Aug 10.

Division of Biostatistics, Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-018-1492-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085761PMC
August 2018

Sparse conserved under-methylated CpGs are associated with high-order chromatin structure.

Genome Biol 2017 08 31;18(1):163. Epub 2017 Aug 31.

Division of Biostatistics, Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-017-1296-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5580327PMC
August 2017

Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes.

Nat Genet 2015 Oct 24;47(10):1149-57. Epub 2015 Aug 24.

Division of Biostatistics, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas, USA.

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http://dx.doi.org/10.1038/ng.3385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4780747PMC
October 2015

Comparative analysis of metazoan chromatin organization.

Nature 2014 Aug;512(7515):449-52

1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1038/nature13415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227084PMC
August 2014

PHF8 and REST/NRSF co-occupy gene promoters to regulate proximal gene expression.

Sci Rep 2014 May 23;4:5008. Epub 2014 May 23.

Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, 200092, China.

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http://dx.doi.org/10.1038/srep05008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4031473PMC
May 2014

BSeQC: quality control of bisulfite sequencing experiments.

Bioinformatics 2013 Dec 23;29(24):3227-9. Epub 2013 Sep 23.

Department of Bioinformatics, School of Life sciences and Technology, Tongji University, Shanghai 20092, China, Dan L. Duncan Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.

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https://academic.oup.com/bioinformatics/article/29/24/3227/1
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http://dx.doi.org/10.1093/bioinformatics/btt548DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842756PMC
December 2013

CistromeFinder for ChIP-seq and DNase-seq data reuse.

Bioinformatics 2013 May 18;29(10):1352-4. Epub 2013 Mar 18.

Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai 20092, China.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btt135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3654708PMC
May 2013