Xizeng Mao

Xizeng Mao

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Xizeng Mao

Xizeng Mao

Publications by authors named "Xizeng Mao"

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29Publications

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Revisiting operons: an analysis of the landscape of transcriptional units in E. coli.

BMC Bioinformatics 2015 Nov 4;16:356. Epub 2015 Nov 4.

Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, USA.

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http://dx.doi.org/10.1186/s12859-015-0805-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4634151PMC
November 2015

Comprehensive characterization of the genomic alterations in human gastric cancer.

Int J Cancer 2015 Jul 3;137(1):86-95. Epub 2014 Dec 3.

Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE; Department of Biochemistry and Molecular Biology, Computational Systems Biology Laboratory, Institute of Bioinformatics, University of Georgia, Athens, GA.

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http://dx.doi.org/10.1002/ijc.29352DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4776643PMC
July 2015

Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective.

Sci China Life Sci 2014 Nov 18;57(11):1121-30. Epub 2014 Sep 18.

Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.

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http://dx.doi.org/10.1007/s11427-014-4734-yDOI Listing
November 2014

DMINDA: an integrated web server for DNA motif identification and analyses.

Nucleic Acids Res 2014 Jul 21;42(Web Server issue):W12-9. Epub 2014 Apr 21.

Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens GA 30602, USA BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA College of Computer Science and Technology, Jilin University, Changchun, China

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http://dx.doi.org/10.1093/nar/gku315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086085PMC
July 2014

Elucidation of how cancer cells avoid acidosis through comparative transcriptomic data analysis.

PLoS One 2013 14;8(8):e71177. Epub 2013 Aug 14.

Computational Systems Biology Lab, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071177PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3743895PMC
March 2014

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

Nucleic Acids Res 2014 Jan 7;42(Database issue):D654-9. Epub 2013 Nov 7.

Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA, School of Mathematics, Shandong University, Jinan, Shandong 250100, China, College of Computer Science and Technology, Jilin University, Changchun, Jilin 130012, China and College of Computer Science, Central China Normal University, Wuhan, Hubei 430079, China.

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http://dx.doi.org/10.1093/nar/gkt1048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965076PMC
January 2014

CINPER: an interactive web system for pathway prediction for prokaryotes.

PLoS One 2012 7;7(12):e51252. Epub 2012 Dec 7.

Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0051252PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3517448PMC
June 2013

The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces.

Nucleic Acids Res 2012 Sep 26;40(17):8210-8. Epub 2012 Jun 26.

Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA 30605, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gks605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458553PMC
September 2012

dbCAN: a web resource for automated carbohydrate-active enzyme annotation.

Nucleic Acids Res 2012 Jul 29;40(Web Server issue):W445-51. Epub 2012 May 29.

Computational System Biology Laboratory, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics, BioEnergy Science Center, University of Georgia, Athens, GA, USA.

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http://dx.doi.org/10.1093/nar/gks479DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394287PMC
July 2012

A comparative study of gene-expression data of basal cell carcinoma and melanoma reveals new insights about the two cancers.

PLoS One 2012 25;7(1):e30750. Epub 2012 Jan 25.

Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0030750PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266277PMC
June 2012

SEAS: a system for SEED-based pathway enrichment analysis.

PLoS One 2011 22;6(7):e22556. Epub 2011 Jul 22.

Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0022556PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142180PMC
December 2011

Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes.

Nucleic Acids Res 2011 Dec 29;39(22):e150. Epub 2011 Sep 29.

Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, Computational Systems Biology Laboratory, University of Georgia, Athens, GA 30602, USA.

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https://academic.oup.com/nar/article/39/22/e150/2409525
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http://dx.doi.org/10.1093/nar/gkr766DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3239196PMC
December 2011

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases.

Nucleic Acids Res 2011 Jul;39(Web Server issue):W316-22

Center for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, China.

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http://dx.doi.org/10.1093/nar/gkr483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125809PMC
July 2011

Computational prediction of the osmoregulation network in Synechococcus sp. WH8102.

BMC Genomics 2010 May 10;11:291. Epub 2010 May 10.

Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1186/1471-2164-11-291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874817PMC
May 2010

Genes and (common) pathways underlying drug addiction.

PLoS Comput Biol 2008 Jan 20;4(1):e2. Epub 2007 Nov 20.

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, People's Republic of China.

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http://dx.doi.org/10.1371/journal.pcbi.0040002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2174978PMC
January 2008

Genome comparison using Gene Ontology (GO) with statistical testing.

BMC Bioinformatics 2006 Aug 11;7:374. Epub 2006 Aug 11.

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing 100871, PR China.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-7-374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1569881PMC
August 2006

Molecular analysis of early rice stamen development using organ-specific gene expression profiling.

Plant Mol Biol 2006 Aug;61(6):845-61

PKU-Yale Joint Research Center of Agricultural and Plant Molecular Biology, National Key Laboratory of Protein Engineering and Plant Gene Engineering, College of Life Sciences, Peking Unviersity, Beijing, 100871, China.

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http://dx.doi.org/10.1007/s11103-006-0054-3DOI Listing
August 2006

KOBAS server: a web-based platform for automated annotation and pathway identification.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W720-4

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing 100871, PR China.

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http://dx.doi.org/10.1093/nar/gkl167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538915PMC
July 2006

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary.

Bioinformatics 2005 Oct 7;21(19):3787-93. Epub 2005 Apr 7.

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, PR China.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti430DOI Listing
October 2005