Xingyi Guo

Xingyi Guo

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Xingyi Guo

Publications by authors named "Xingyi Guo"

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Discovery of a Pathogenic Variant rs139379666 (p. P2974L) in for Breast Cancer Risk in Chinese Populations.

Cancer Epidemiol Biomarkers Prev 2019 Aug 3;28(8):1308-1315. Epub 2019 Jun 3.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, Tennessee.

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http://dx.doi.org/10.1158/1055-9965.EPI-18-1294DOI Listing
August 2019

Correction to: Genetic variant predictors of gene expression provide new insight into risk of colorectal cancer.

Hum Genet 2019 Jul;138(7):789-791

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.

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http://dx.doi.org/10.1007/s00439-019-02030-8DOI Listing
July 2019

Identifying Putative Susceptibility Genes and Evaluating Their Associations with Somatic Mutations in Human Cancers.

Am J Hum Genet 2019 Jul 26. Epub 2019 Jul 26.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, and Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2019.07.006DOI Listing
July 2019

Transcriptome-Wide Association Study Identifies Susceptibility Loci and Genes for Age at Natural Menopause.

Reprod Sci 2019 04 30;26(4):496-502. Epub 2018 May 30.

1 Department of Medicine, Vanderbilt Epidemiology Center and Division of Epidemiology, Vanderbilt University School of Medicine, Nashville, TN, USA.

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http://dx.doi.org/10.1177/1933719118776788DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421625PMC
April 2019

Genetic variant predictors of gene expression provide new insight into risk of colorectal cancer.

Hum Genet 2019 Apr 28;138(4):307-326. Epub 2019 Feb 28.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.

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http://dx.doi.org/10.1007/s00439-019-01989-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6483948PMC
April 2019

A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk.

Authors:
Yingchang Lu Alicia Beeghly-Fadiel Lang Wu Xingyi Guo Bingshan Li Joellen M Schildkraut Hae Kyung Im Yian A Chen Jennifer B Permuth Brett M Reid Jamie K Teer Kirsten B Moysich Irene L Andrulis Hoda Anton-Culver Banu K Arun Elisa V Bandera Rosa B Barkardottir Daniel R Barnes Javier Benitez Line Bjorge James Brenton Ralf Butzow Trinidad Caldes Maria A Caligo Ian Campbell Jenny Chang-Claude Kathleen B M Claes Fergus J Couch Daniel W Cramer Mary B Daly Anna deFazio Joe Dennis Orland Diez Susan M Domchek Thilo Dörk Douglas F Easton Diana M Eccles Peter A Fasching Renée T Fortner George Fountzilas Eitan Friedman Patricia A Ganz Judy Garber Graham G Giles Andrew K Godwin David E Goldgar Marc T Goodman Mark H Greene Jacek Gronwald Ute Hamann Florian Heitz Michelle A T Hildebrandt Claus K Høgdall Antoinette Hollestelle Peter J Hulick David G Huntsman Evgeny N Imyanitov Claudine Isaacs Anna Jakubowska Paul James Beth Y Karlan Linda E Kelemen Lambertus A Kiemeney Susanne K Kjaer Ava Kwong Nhu D Le Goska Leslie Fabienne Lesueur Douglas A Levine Amalia Mattiello Taymaa May Lesley McGuffog Iain A McNeish Melissa A Merritt Francesmary Modugno Marco Montagna Susan L Neuhausen Heli Nevanlinna Finn C Nielsen Liene Nikitina-Zake Robert L Nussbaum Kenneth Offit Edith Olah Olufunmilayo I Olopade Sara H Olson Håkan Olsson Ana Osorio Sue K Park Michael T Parsons Petra H M Peeters Tanja Pejovic Paolo Peterlongo Catherine M Phelan Miquel Angel Pujana Susan J Ramus Gad Rennert Harvey Risch Gustavo C Rodriguez Cristina Rodríguez-Antona Isabelle Romieu Matti A Rookus Mary Anne Rossing Iwona K Rzepecka Dale P Sandler Rita K Schmutzler Veronica W Setiawan Priyanka Sharma Weiva Sieh Jacques Simard Christian F Singer Honglin Song Melissa C Southey Amanda B Spurdle Rebecca Sutphen Anthony J Swerdlow Manuel R Teixeira Soo H Teo Mads Thomassen Marc Tischkowitz Amanda E Toland Antonia Trichopoulou Nadine Tung Shelley S Tworoger Elizabeth J van Rensburg Adriaan Vanderstichele Ana Vega Digna Velez Edwards Penelope M Webb Jeffrey N Weitzel Nicolas Wentzensen Emily White Alicja Wolk Anna H Wu Drakoulis Yannoukakos Kristin K Zorn Simon A Gayther Antonis C Antoniou Andrew Berchuck Ellen L Goode Georgia Chenevix-Trench Thomas A Sellers Paul D P Pharoah Wei Zheng Jirong Long

Cancer Res 2018 Sep 27;78(18):5419-5430. Epub 2018 Jul 27.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee.

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http://dx.doi.org/10.1158/0008-5472.CAN-18-0951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6139053PMC
September 2018

Gene expression in triple-negative breast cancer in relation to survival.

Breast Cancer Res Treat 2018 Aug 10;171(1):199-207. Epub 2018 May 10.

Division of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Vanderbilt-Ingram Cancer Center, Nashville, TN, USA.

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http://dx.doi.org/10.1007/s10549-018-4816-9DOI Listing
August 2018

A transcriptome-wide association study of 229,000 women identifies new candidate susceptibility genes for breast cancer.

Authors:
Lang Wu Wei Shi Jirong Long Xingyi Guo Kyriaki Michailidou Jonathan Beesley Manjeet K Bolla Xiao-Ou Shu Yingchang Lu Qiuyin Cai Fares Al-Ejeh Esdy Rozali Qin Wang Joe Dennis Bingshan Li Chenjie Zeng Helian Feng Alexander Gusev Richard T Barfield Irene L Andrulis Hoda Anton-Culver Volker Arndt Kristan J Aronson Paul L Auer Myrto Barrdahl Caroline Baynes Matthias W Beckmann Javier Benitez Marina Bermisheva Carl Blomqvist Natalia V Bogdanova Stig E Bojesen Hiltrud Brauch Hermann Brenner Louise Brinton Per Broberg Sara Y Brucker Barbara Burwinkel Trinidad Caldés Federico Canzian Brian D Carter J Esteban Castelao Jenny Chang-Claude Xiaoqing Chen Ting-Yuan David Cheng Hans Christiansen Christine L Clarke Margriet Collée Sten Cornelissen Fergus J Couch David Cox Angela Cox Simon S Cross Julie M Cunningham Kamila Czene Mary B Daly Peter Devilee Kimberly F Doheny Thilo Dörk Isabel Dos-Santos-Silva Martine Dumont Miriam Dwek Diana M Eccles Ursula Eilber A Heather Eliassen Christoph Engel Mikael Eriksson Laura Fachal Peter A Fasching Jonine Figueroa Dieter Flesch-Janys Olivia Fletcher Henrik Flyger Lin Fritschi Marike Gabrielson Manuela Gago-Dominguez Susan M Gapstur Montserrat García-Closas Mia M Gaudet Maya Ghoussaini Graham G Giles Mark S Goldberg David E Goldgar Anna González-Neira Pascal Guénel Eric Hahnen Christopher A Haiman Niclas Håkansson Per Hall Emily Hallberg Ute Hamann Patricia Harrington Alexander Hein Belynda Hicks Peter Hillemanns Antoinette Hollestelle Robert N Hoover John L Hopper Guanmengqian Huang Keith Humphreys David J Hunter Anna Jakubowska Wolfgang Janni Esther M John Nichola Johnson Kristine Jones Michael E Jones Audrey Jung Rudolf Kaaks Michael J Kerin Elza Khusnutdinova Veli-Matti Kosma Vessela N Kristensen Diether Lambrechts Loic Le Marchand Jingmei Li Sara Lindström Jolanta Lissowska Wing-Yee Lo Sibylle Loibl Jan Lubinski Craig Luccarini Michael P Lux Robert J MacInnis Tom Maishman Ivana Maleva Kostovska Arto Mannermaa JoAnn E Manson Sara Margolin Dimitrios Mavroudis Hanne Meijers-Heijboer Alfons Meindl Usha Menon Jeffery Meyer Anna Marie Mulligan Susan L Neuhausen Heli Nevanlinna Patrick Neven Sune F Nielsen Børge G Nordestgaard Olufunmilayo I Olopade Janet E Olson Håkan Olsson Paolo Peterlongo Julian Peto Dijana Plaseska-Karanfilska Ross Prentice Nadege Presneau Katri Pylkäs Brigitte Rack Paolo Radice Nazneen Rahman Gad Rennert Hedy S Rennert Valerie Rhenius Atocha Romero Jane Romm Anja Rudolph Emmanouil Saloustros Dale P Sandler Elinor J Sawyer Marjanka K Schmidt Rita K Schmutzler Andreas Schneeweiss Rodney J Scott Christopher G Scott Sheila Seal Mitul Shah Martha J Shrubsole Ann Smeets Melissa C Southey John J Spinelli Jennifer Stone Harald Surowy Anthony J Swerdlow Rulla M Tamimi William Tapper Jack A Taylor Mary Beth Terry Daniel C Tessier Abigail Thomas Kathrin Thöne Rob A E M Tollenaar Diana Torres Thérèse Truong Michael Untch Celine Vachon David Van Den Berg Daniel Vincent Quinten Waisfisz Clarice R Weinberg Camilla Wendt Alice S Whittemore Hans Wildiers Walter C Willett Robert Winqvist Alicja Wolk Lucy Xia Xiaohong R Yang Argyrios Ziogas Elad Ziv Alison M Dunning Paul D P Pharoah Jacques Simard Roger L Milne Stacey L Edwards Peter Kraft Douglas F Easton Georgia Chenevix-Trench Wei Zheng

Nat Genet 2018 07 18;50(7):968-978. Epub 2018 Jun 18.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN, USA.

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http://dx.doi.org/10.1038/s41588-018-0132-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6314198PMC
July 2018

A Comprehensive cis-eQTL Analysis Revealed Target Genes in Breast Cancer Susceptibility Loci Identified in Genome-wide Association Studies.

Am J Hum Genet 2018 05;102(5):890-903

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, and Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203, USA.

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http://dx.doi.org/10.1016/j.ajhg.2018.03.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986971PMC
May 2018

De novo assembly and analysis of the Artemisia argyi transcriptome and identification of genes involved in terpenoid biosynthesis.

Sci Rep 2018 Apr 11;8(1):5824. Epub 2018 Apr 11.

Key Laboratory of Xin'an Medicine, Ministry of Education, Anhui University of Chinese Medicine, Hefei, 230038, China.

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http://dx.doi.org/10.1038/s41598-018-24201-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5895812PMC
April 2018

Use of deep whole-genome sequencing data to identify structure risk variants in breast cancer susceptibility genes.

Hum Mol Genet 2018 03;27(5):853-859

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, and Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN 37203, USA.

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http://dx.doi.org/10.1093/hmg/ddy005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454518PMC
March 2018

Long intergenic non-coding RNA expression signature in human breast cancer.

Sci Rep 2016 11 29;6:37821. Epub 2016 Nov 29.

Division of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37203, USA.

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http://dx.doi.org/10.1038/srep37821DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5126689PMC
November 2016

Erratum to: An integrative genomics approach for identifying novel functional consequences of PBRM1 truncated mutations in clear cell renal cell carcinoma (ccRCC).

BMC Genomics 2016 10 21;17(1):821. Epub 2016 Oct 21.

Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN, 37203, USA.

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http://dx.doi.org/10.1186/s12864-016-3141-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5075213PMC
October 2016

Fine-scale mapping of 8q24 locus identifies multiple independent risk variants for breast cancer.

Authors:
Jiajun Shi Yanfeng Zhang Wei Zheng Kyriaki Michailidou Maya Ghoussaini Manjeet K Bolla Qin Wang Joe Dennis Michael Lush Roger L Milne Xiao-Ou Shu Jonathan Beesley Siddhartha Kar Irene L Andrulis Hoda Anton-Culver Volker Arndt Matthias W Beckmann Zhiguo Zhao Xingyi Guo Javier Benitez Alicia Beeghly-Fadiel William Blot Natalia V Bogdanova Stig E Bojesen Hiltrud Brauch Hermann Brenner Louise Brinton Annegien Broeks Thomas Brüning Barbara Burwinkel Hui Cai Sander Canisius Jenny Chang-Claude Ji-Yeob Choi Fergus J Couch Angela Cox Simon S Cross Kamila Czene Hatef Darabi Peter Devilee Arnaud Droit Thilo Dork Peter A Fasching Olivia Fletcher Henrik Flyger Florentia Fostira Valerie Gaborieau Montserrat García-Closas Graham G Giles Pascal Guenel Christopher A Haiman Ute Hamann Mikael Hartman Hui Miao Antoinette Hollestelle John L Hopper Chia-Ni Hsiung Hidemi Ito Anna Jakubowska Nichola Johnson Diana Torres Maria Kabisch Daehee Kang Sofia Khan Julia A Knight Veli-Matti Kosma Diether Lambrechts Jingmei Li Annika Lindblom Artitaya Lophatananon Jan Lubinski Arto Mannermaa Siranoush Manoukian Loic Le Marchand Sara Margolin Frederik Marme Keitaro Matsuo Catriona McLean Alfons Meindl Kenneth Muir Susan L Neuhausen Heli Nevanlinna Silje Nord Anne-Lise Børresen-Dale Janet E Olson Nick Orr Ans M W van den Ouweland Paolo Peterlongo Thomas Choudary Putti Anja Rudolph Suleeporn Sangrajrang Elinor J Sawyer Marjanka K Schmidt Rita K Schmutzler Chen-Yang Shen Ming-Feng Hou Matha J Shrubsole Melissa C Southey Anthony Swerdlow Soo Hwang Teo Bernard Thienpont Amanda E Toland Robert A E M Tollenaar Ian Tomlinson Therese Truong Chiu-Chen Tseng Wanqing Wen Robert Winqvist Anna H Wu Cheng Har Yip Pilar M Zamora Ying Zheng Giuseppe Floris Ching-Yu Cheng Maartje J Hooning John W M Martens Caroline Seynaeve Vessela N Kristensen Per Hall Paul D P Pharoah Jacques Simard Georgia Chenevix-Trench Alison M Dunning Antonis C Antoniou Douglas F Easton Qiuyin Cai Jirong Long

Int J Cancer 2016 Sep 17;139(6):1303-1317. Epub 2016 Jun 17.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203, USA.

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http://dx.doi.org/10.1002/ijc.30150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5110427PMC
September 2016

Long-term soy consumption and tumor tissue MicroRNA and gene expression in triple-negative breast cancer.

Cancer 2016 08 16;122(16):2544-51. Epub 2016 May 16.

Division of Epidemiology, Department of Medicine and Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Vanderbilt University, Nashville, Tennessee.

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http://dx.doi.org/10.1002/cncr.29981DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974138PMC
August 2016

An integrative genomics approach for identifying novel functional consequences of PBRM1 truncated mutations in clear cell renal cell carcinoma (ccRCC).

BMC Genomics 2016 08 22;17 Suppl 7:515. Epub 2016 Aug 22.

Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN, 37203, USA.

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http://dx.doi.org/10.1186/s12864-016-2906-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001239PMC
August 2016

Identification of independent association signals and putative functional variants for breast cancer risk through fine-scale mapping of the 12p11 locus.

Authors:
Chenjie Zeng Xingyi Guo Jirong Long Karoline B Kuchenbaecker Arnaud Droit Kyriaki Michailidou Maya Ghoussaini Siddhartha Kar Adam Freeman John L Hopper Roger L Milne Manjeet K Bolla Qin Wang Joe Dennis Simona Agata Shahana Ahmed Kristiina Aittomäki Irene L Andrulis Hoda Anton-Culver Natalia N Antonenkova Adalgeir Arason Volker Arndt Banu K Arun Brita Arver Francois Bacot Daniel Barrowdale Caroline Baynes Alicia Beeghly-Fadiel Javier Benitez Marina Bermisheva Carl Blomqvist William J Blot Natalia V Bogdanova Stig E Bojesen Bernardo Bonanni Anne-Lise Borresen-Dale Judith S Brand Hiltrud Brauch Paul Brennan Hermann Brenner Annegien Broeks Thomas Brüning Barbara Burwinkel Saundra S Buys Qiuyin Cai Trinidad Caldes Ian Campbell Jane Carpenter Jenny Chang-Claude Ji-Yeob Choi Kathleen B M Claes Christine Clarke Angela Cox Simon S Cross Kamila Czene Mary B Daly Miguel de la Hoya Kim De Leeneer Peter Devilee Orland Diez Susan M Domchek Michele Doody Cecilia M Dorfling Thilo Dörk Isabel Dos-Santos-Silva Martine Dumont Miriam Dwek Bernd Dworniczak Kathleen Egan Ursula Eilber Zakaria Einbeigi Bent Ejlertsen Steve Ellis Debra Frost Fiona Lalloo Peter A Fasching Jonine Figueroa Henrik Flyger Michael Friedlander Eitan Friedman Gaetana Gambino Yu-Tang Gao Judy Garber Montserrat García-Closas Andrea Gehrig Francesca Damiola Fabienne Lesueur Sylvie Mazoyer Dominique Stoppa-Lyonnet Graham G Giles Andrew K Godwin David E Goldgar Anna González-Neira Mark H Greene Pascal Guénel Lothar Haeberle Christopher A Haiman Emily Hallberg Ute Hamann Thomas V O Hansen Steven Hart Jaana M Hartikainen Mikael Hartman Norhashimah Hassan Sue Healey Frans B L Hogervorst Senno Verhoef Carolyn B Hendricks Peter Hillemanns Antoinette Hollestelle Peter J Hulick David J Hunter Evgeny N Imyanitov Claudine Isaacs Hidemi Ito Anna Jakubowska Ramunas Janavicius Katarzyna Jaworska-Bieniek Uffe Birk Jensen Esther M John Charles Joly Beauparlant Michael Jones Maria Kabisch Daehee Kang Beth Y Karlan Saila Kauppila Michael J Kerin Sofia Khan Elza Khusnutdinova Julia A Knight Irene Konstantopoulou Peter Kraft Ava Kwong Yael Laitman Diether Lambrechts Conxi Lazaro Loic Le Marchand Chuen Neng Lee Min Hyuk Lee Jenny Lester Jingmei Li Annelie Liljegren Annika Lindblom Artitaya Lophatananon Jan Lubinski Phuong L Mai Arto Mannermaa Siranoush Manoukian Sara Margolin Frederik Marme Keitaro Matsuo Lesley McGuffog Alfons Meindl Florence Menegaux Marco Montagna Kenneth Muir Anna Marie Mulligan Katherine L Nathanson Susan L Neuhausen Heli Nevanlinna Polly A Newcomb Silje Nord Robert L Nussbaum Kenneth Offit Edith Olah Olufunmilayo I Olopade Curtis Olswold Ana Osorio Laura Papi Tjoung-Won Park-Simon Ylva Paulsson-Karlsson Stephanie Peeters Bernard Peissel Paolo Peterlongo Julian Peto Georg Pfeiler Catherine M Phelan Nadege Presneau Paolo Radice Nazneen Rahman Susan J Ramus Muhammad Usman Rashid Gad Rennert Kerstin Rhiem Anja Rudolph Ritu Salani Suleeporn Sangrajrang Elinor J Sawyer Marjanka K Schmidt Rita K Schmutzler Minouk J Schoemaker Peter Schürmann Caroline Seynaeve Chen-Yang Shen Martha J Shrubsole Xiao-Ou Shu Alice Sigurdson Christian F Singer Susan Slager Penny Soucy Melissa Southey Doris Steinemann Anthony Swerdlow Csilla I Szabo Sandrine Tchatchou Manuel R Teixeira Soo H Teo Mary Beth Terry Daniel C Tessier Alex Teulé Mads Thomassen Laima Tihomirova Marc Tischkowitz Amanda E Toland Nadine Tung Clare Turnbull Ans M W van den Ouweland Elizabeth J van Rensburg David Ven den Berg Joseph Vijai Shan Wang-Gohrke Jeffrey N Weitzel Alice S Whittemore Robert Winqvist Tien Y Wong Anna H Wu Drakoulis Yannoukakos Jyh-Cherng Yu Paul D P Pharoah Per Hall Georgia Chenevix-Trench Alison M Dunning Jacques Simard Fergus J Couch Antonis C Antoniou Douglas F Easton Wei Zheng

Breast Cancer Res 2016 06 21;18(1):64. Epub 2016 Jun 21.

Division of Epidemiology, Department of Medicine, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, 2525 West End Avenue, 8th Floor, Nashville, TN, 37203-1738, USA.

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http://dx.doi.org/10.1186/s13058-016-0718-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4962376PMC
June 2016

Evaluation of potential regulatory function of breast cancer risk locus at 6q25.1.

Carcinogenesis 2016 Feb 8;37(2):163-168. Epub 2015 Dec 8.

Division of Epidemiology , Department of Medicine , Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center , Vanderbilt University School of Medicine, Nashville , TN, 37203 , USA.

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http://dx.doi.org/10.1093/carcin/bgv170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5006208PMC
February 2016

Integrative genomic analysis reveals functional diversification of APOBEC gene family in breast cancer.

Hum Genomics 2015 Dec 18;9:34. Epub 2015 Dec 18.

Division of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, 37203, USA.

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http://dx.doi.org/10.1186/s40246-015-0056-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684623PMC
December 2015

Fine-scale mapping of the 4q24 locus identifies two independent loci associated with breast cancer risk.

Authors:
Xingyi Guo Jirong Long Chenjie Zeng Kyriaki Michailidou Maya Ghoussaini Manjeet K Bolla Qin Wang Roger L Milne Xiao-Ou Shu Qiuyin Cai Jonathan Beesley Siddhartha P Kar Irene L Andrulis Hoda Anton-Culver Volker Arndt Matthias W Beckmann Alicia Beeghly-Fadiel Javier Benitez William Blot Natalia Bogdanova Stig E Bojesen Hiltrud Brauch Hermann Brenner Louise Brinton Annegien Broeks Thomas Brüning Barbara Burwinkel Hui Cai Sander Canisius Jenny Chang-Claude Ji-Yeob Choi Fergus J Couch Angela Cox Simon S Cross Kamila Czene Hatef Darabi Peter Devilee Arnaud Droit Thilo Dörk Peter A Fasching Olivia Fletcher Henrik Flyger Florentia Fostira Valerie Gaborieau Montserrat García-Closas Graham G Giles Mervi Grip Pascal Guénel Christopher A Haiman Ute Hamann Mikael Hartman Antoinette Hollestelle John L Hopper Chia-Ni Hsiung Hidemi Ito Anna Jakubowska Nichola Johnson Maria Kabisch Daehee Kang Sofia Khan Julia A Knight Veli-Matti Kosma Diether Lambrechts Loic Le Marchand Jingmei Li Annika Lindblom Artitaya Lophatananon Jan Lubinski Arto Mannermaa Siranoush Manoukian Sara Margolin Frederik Marme Keitaro Matsuo Catriona A McLean Alfons Meindl Kenneth Muir Susan L Neuhausen Heli Nevanlinna Silje Nord Janet E Olson Nick Orr Paolo Peterlongo Thomas Choudary Putti Anja Rudolph Suleeporn Sangrajrang Elinor J Sawyer Marjanka K Schmidt Rita K Schmutzler Chen-Yang Shen Jiajun Shi Martha J Shrubsole Melissa C Southey Anthony Swerdlow Soo Hwang Teo Bernard Thienpont Amanda Ewart Toland Robert A E M Tollenaar Ian P M Tomlinson Thérèse Truong Chiu-Chen Tseng Ans van den Ouweland Wanqing Wen Robert Winqvist Anna Wu Cheng Har Yip M Pilar Zamora Ying Zheng Per Hall Paul D P Pharoah Jacques Simard Georgia Chenevix-Trench Alison M Dunning Douglas F Easton Wei Zheng

Cancer Epidemiol Biomarkers Prev 2015 Nov 9;24(11):1680-91. Epub 2015 Sep 9.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee.

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http://dx.doi.org/10.1158/1055-9965.EPI-15-0363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4633342PMC
November 2015

Tumor tissue microRNA expression in association with triple-negative breast cancer outcomes.

Breast Cancer Res Treat 2015 Jul 11;152(1):183-191. Epub 2015 Jun 11.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt University Medical Center, 2525 West End Avenue, Suite 600 (IMPH), Nashville, TN, United States.

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http://link.springer.com/content/pdf/10.1007/s10549-015-3460
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http://link.springer.com/10.1007/s10549-015-3460-x
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http://dx.doi.org/10.1007/s10549-015-3460-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484742PMC
July 2015

Characterization of human pseudogene-derived non-coding RNAs for functional potential.

PLoS One 2014 3;9(4):e93972. Epub 2014 Apr 3.

The Saul R. Korey Department of Neurology, Albert Einstein College of Medicine, New York, New York, United States of America; Department of Genetics, Albert Einstein College of Medicine, New York, New York, United States of America; Department of Neuroscience, Albert Einstein College of Medicine, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093972PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974860PMC
January 2015

Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation.

Bioinformatics 2015 Jan 5;31(1):84-93. Epub 2014 Sep 5.

Department of Biomedical Informatics, Department of Biostatistics and Center for Quantitative Sciences, Vanderbilt University, Nashville, TN 37232, Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH 44106, Department of Psychiatry and Department of Cancer Biology, Vanderbilt University, Nashville, TN 37212, USA Department of Biomedical Informatics, Department of Biostatistics and Center for Quantitative Sciences, Vanderbilt University, Nashville, TN 37232, Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH 44106, Department of Psychiatry and Department of Cancer Biology, Vanderbilt University, Nashville, TN 37212, USA Department of Biomedical Informatics, Department of Biostatistics and Center for Quantitative Sciences, Vanderbilt University, Nashville, TN 37232, Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH 44106, Department of Psychiatry and Department of Cancer Biology, Vanderbilt University, Nashville, TN 37212, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271146PMC
January 2015

Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.

Hum Mol Genet 2014 Oct 26;23(20):5492-504. Epub 2014 May 26.

Department of Human Genetics and Disease Diversity, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan, Laboratory for Cardiovascular Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan, Division of Disease Diversity, Bioresource Research Center, Tokyo Medical and Dental University, Tokyo, Japan.

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http://hmg.oxfordjournals.org/content/early/2014/06/20/hmg.d
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http://www.hmg.oxfordjournals.org/cgi/doi/10.1093/hmg/ddu248
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http://dx.doi.org/10.1093/hmg/ddu248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4168820PMC
October 2014

Nfatc1 orchestrates aging in hair follicle stem cells.

Proc Natl Acad Sci U S A 2013 Dec 26;110(51):E4950-9. Epub 2013 Nov 26.

Laboratory of Mammalian Cell Biology and Development and Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3870727PMC
December 2013

Architectural niche organization by LHX2 is linked to hair follicle stem cell function.

Cell Stem Cell 2013 Sep;13(3):314-27

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.stem.2013.06.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3856689PMC
September 2013

Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells.

J Neurogenet 2011 Oct 29;25(3):88-103. Epub 2011 Jul 29.

Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York 10416, USA.

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http://dx.doi.org/10.3109/01677063.2011.597908DOI Listing
October 2011

Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage.

Cell Stem Cell 2011 Sep;9(3):219-32

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology & Development, The Rockefeller University, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.stem.2011.07.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166618PMC
September 2011

Characterization of the past and current duplication activities in the human 22q11.2 region.

BMC Genomics 2011 Jan 26;12:71. Epub 2011 Jan 26.

Department of Neurology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.

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http://dx.doi.org/10.1186/1471-2164-12-71DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040729PMC
January 2011

β-catenin promoter ChIP-chip reveals potential schizophrenia and bipolar disorder gene network.

J Neurogenet 2010 Dec 8;24(4):182-93. Epub 2010 Jul 8.

Department of Psychiatry and Behavioral Sciences, Division of Basic Research, Albert Einstein College of Medicine, Bronx, New York 10461, USA.

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http://dx.doi.org/10.3109/01677063.2010.495182DOI Listing
December 2010

Small RNAs originated from pseudogenes: cis- or trans-acting?

PLoS Comput Biol 2009 Jul 31;5(7):e1000449. Epub 2009 Jul 31.

Institute for Brain Disorders and Neural Regeneration, Department of Neurology, Albert Einstein College of Medicine, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1000449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2708354PMC
July 2009

Assessment of codivergence of mastreviruses with their plant hosts.

BMC Evol Biol 2008 Dec 18;8:335. Epub 2008 Dec 18.

State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, PR

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http://dx.doi.org/10.1186/1471-2148-8-335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2630985PMC
December 2008

Selection and mutation on microRNA target sequences during rice evolution.

BMC Genomics 2008 Oct 2;9:454. Epub 2008 Oct 2.

Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou 310029, PR China.

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http://dx.doi.org/10.1186/1471-2164-9-454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2567346PMC
October 2008

Chloroplast DNA insertions into the nuclear genome of rice: the genes, sites and ages of insertion involved.

Funct Integr Genomics 2008 May 10;8(2):101-8. Epub 2007 Nov 10.

Institute of Crop Science, Zhejiang University, Hangzhou 310029, China.

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May 2008

Patterns of selective constraints in noncoding DNA of rice.

BMC Evol Biol 2007 Nov 1;7:208. Epub 2007 Nov 1.

Institute of Crop Science & Institute of Bioinformatics, Zhejiang University, Hangzhou 310029, China.

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http://dx.doi.org/10.1186/1471-2148-7-208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2174951PMC
November 2007

Molecular evolution and selection of a gene encoding two tandem microRNAs in rice.

FEBS Lett 2007 Oct 12;581(24):4789-93. Epub 2007 Sep 12.

Institute of Crop Science, Zhejiang University, Hangzhou 310029, China.

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http://dx.doi.org/10.1016/j.febslet.2007.09.002DOI Listing
October 2007

Evidence of selectively driven codon usage in rice: implications for GC content evolution of Gramineae genes.

FEBS Lett 2007 Mar 8;581(5):1015-21. Epub 2007 Feb 8.

Institute of Bioinformatics, Zhejiang University, Hangzhou 310029, China.

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http://dx.doi.org/10.1016/j.febslet.2007.01.088DOI Listing
March 2007