Xiaoping Su

Xiaoping Su

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Immunomodulatory TGF-β Signaling in Hepatocellular Carcinoma.

Trends Mol Med 2019 Nov 25;25(11):1010-1023. Epub 2019 Jul 25.

Departments of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1016/j.molmed.2019.06.007DOI Listing
November 2019

Potential Markers from Serum-Purified Exosomes for Detecting Oral Squamous Cell Carcinoma Metastasis.

Cancer Epidemiol Biomarkers Prev 2019 Oct 26;28(10):1668-1681. Epub 2019 Jul 26.

Guangxi Key Laboratory of the Rehabilitation and Reconstruction of Oral and Maxillofacial Research; Guangxi Key Laboratory of Oral and Maxillofacial Surgery Disease Treatment; Guangxi Clinical Research Center for Craniofacial Deformity, College of Stomatology, Guangxi Medical University, Nanning, P.R. China.

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http://dx.doi.org/10.1158/1055-9965.EPI-18-1122DOI Listing
October 2019

Comprehensive Liquid Profiling of Circulating Tumor DNA and Protein Biomarkers in Long-Term Follow-Up Patients with Hepatocellular Carcinoma.

Clin Cancer Res 2019 Sep 19;25(17):5284-5294. Epub 2019 Jun 19.

The United Innovation of Mengchao Hepatobiliary Technology Key Laboratory of Fujian Province, Mengchao Hepatobiliary Hospital of Fujian Medical University, Fuzhou, P. R. China.

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http://clincancerres.aacrjournals.org/lookup/doi/10.1158/107
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http://dx.doi.org/10.1158/1078-0432.CCR-18-3477DOI Listing
September 2019

Site-specific integration of rotavirus VP6 gene in rabbit β-casein locus by CRISPR/Cas9 system.

In Vitro Cell Dev Biol Anim 2019 Sep 31;55(8):586-597. Epub 2019 Jul 31.

State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, Guangxi, China.

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http://dx.doi.org/10.1007/s11626-019-00382-zDOI Listing
September 2019

A Novel Pale-Yellow Coat Color of Rabbits Generated Mutation With CRISPR/Cas9 System.

Front Genet 2019 18;10:875. Epub 2019 Sep 18.

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, China.

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http://dx.doi.org/10.3389/fgene.2019.00875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6759607PMC
September 2019

MiR-199-3p promotes ERK-mediated IL-10 production by targeting poly (ADP-ribose) Polymerase-1 in patients with systemic lupus erythematosus.

Chem Biol Interact 2019 Jun 13;306:110-116. Epub 2019 Apr 13.

Department of Nephrology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, 325000, PR China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00092797183128
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http://dx.doi.org/10.1016/j.cbi.2019.04.015DOI Listing
June 2019

p53 Is a Master Regulator of Proteostasis in SMARCB1-Deficient Malignant Rhabdoid Tumors.

Cancer Cell 2019 Feb;35(2):204-220.e9

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA; Department of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA; David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2019.01.006DOI Listing
February 2019

Combined Next-generation Sequencing and Flow Cytometry Analysis for an Anti-PD-L1 Partial Responder over Time: An Exploration of Mechanisms of PD-L1 Activity and Resistance in Bladder Cancer.

Eur Urol Oncol 2019 Feb 26. Epub 2019 Feb 26.

Brady Urological Institute, Johns Hopkins Medical Institutions, Baltimore, MD, USA; Sydney Kimmel Comprehensive Cancer Center, Johns Hopkins Medical Institutions, Baltimore, MD, USA; Greenberg Bladder Cancer Institute, Johns Hopkins Medical Institutions, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.euo.2019.01.017DOI Listing
February 2019

FGFR1β is a driver isoform of FGFR1 alternative splicing in breast cancer cells.

Oncotarget 2019 Jan 1;10(1):30-44. Epub 2019 Jan 1.

Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://www.oncotarget.com/fulltext/26530
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http://dx.doi.org/10.18632/oncotarget.26530DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343755PMC
January 2019

Integrated Multi-omic Analysis of Esthesioneuroblastomas Identifies Two Subgroups Linked to Cell Ontogeny.

Cell Rep 2018 10;25(3):811-821.e5

Department of Medical Oncology, Groupe Hospitalier Pitié-Salpêtrière, Assistance Publique Hôpitaux de Paris, Sorbonnes-Universités, University Pierre and Marie Curie, Paris, France; Department of Hematology and Medical Oncology, CHRU Strasbourg, Hôpital Hautepierre, Strasbourg, France; Institut Génomique et de Biologie Moléculaire et Cellulaire (IGBMC), Illkirch-Graffenstaden, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183149
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http://dx.doi.org/10.1016/j.celrep.2018.09.047DOI Listing
October 2018

miR-27b Suppresses Endothelial Cell Proliferation and Migration by Targeting Smad7 in Kawasaki Disease.

Cell Physiol Biochem 2018 3;48(4):1804-1814. Epub 2018 Aug 3.

Children's Heart Center, the Second Affiliated Hospital and Yuying Children's Hospital, Institute of Cardiovascular Development and Translational Medicine, Wenzhou Medical University, Wenzhou, China.

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http://dx.doi.org/10.1159/000492354DOI Listing
September 2018

Efficient genome editing in cultured cells and embryos of Debao pig and swamp buffalo using the CRISPR/Cas9 system.

In Vitro Cell Dev Biol Anim 2018 May 19;54(5):375-383. Epub 2018 Mar 19.

Animal Reproduction Institute, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, 530004, China.

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http://dx.doi.org/10.1007/s11626-018-0236-8DOI Listing
May 2018

miR‑186, a serum microRNA, induces endothelial cell apoptosis by targeting SMAD6 in Kawasaki disease.

Int J Mol Med 2018 Apr 18;41(4):1899-1908. Epub 2018 Jan 18.

Children's Heart Center, Institute of Cardiovascular Development and Translational Medicine, The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, Zhejiang 325027, P.R. China.

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http://dx.doi.org/10.3892/ijmm.2018.3397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5810213PMC
April 2018

MicroRNA in vivo precipitation identifies miR-151-3p as a computational unpredictable miRNA to target Stat3 and inhibits innate IL-6 production.

Cell Mol Immunol 2018 02 11;15(2):99-110. Epub 2017 Sep 11.

National Key Laboratory of Medical Immunology & Institute of Immunology, Second Military Medical University, Shanghai 200433, China.

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http://dx.doi.org/10.1038/cmi.2017.82DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811685PMC
February 2018

Circular RNA circMTO1 acts as the sponge of microRNA-9 to suppress hepatocellular carcinoma progression.

Hepatology 2017 10 26;66(4):1151-1164. Epub 2017 Aug 26.

Institute of Immunology, Zhejiang University School of Medicine, Hangzhou, China.

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http://doi.wiley.com/10.1002/hep.29270
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http://dx.doi.org/10.1002/hep.29270DOI Listing
October 2017

Use of a Phosphorylation Site Mutant To Identify Distinct Modes of Gene Repression by the Control of Virulence Regulator (CovR) in Streptococcus pyogenes.

J Bacteriol 2017 09 22;199(18). Epub 2017 Aug 22.

Department of Infectious Diseases, Infection Control and Employee Health, MD Anderson Cancer Center, Houston, Texas, USA

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http://jb.asm.org/lookup/doi/10.1128/JB.00835-16
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http://dx.doi.org/10.1128/JB.00835-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5573087PMC
September 2017

BAP1 inhibits the ER stress gene regulatory network and modulates metabolic stress response.

Proc Natl Acad Sci U S A 2017 03 8;114(12):3192-3197. Epub 2017 Mar 8.

Department of Experimental Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX 77030;

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http://dx.doi.org/10.1073/pnas.1619588114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5373337PMC
March 2017

Expression of human endogenous retrovirus-K is strongly associated with the basal-like breast cancer phenotype.

Sci Rep 2017 02 6;7:41960. Epub 2017 Feb 6.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1038/srep41960DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5292751PMC
February 2017

Human Papillomavirus Drives Tumor Development Throughout the Head and Neck: Improved Prognosis Is Associated With an Immune Response Largely Restricted to the Oropharynx.

J Clin Oncol 2016 12 31;34(34):4132-4141. Epub 2016 Oct 31.

Ankur Chakravarthy, Stephen Henderson, Matt Lechner, Andrew Feber, and Tim R. Fenton, UCL Cancer Institute, University College London, London; Stephen M. Thirdborough, Christian H. Ottensmeier, and Gareth J. Thomas, University of Southampton, Southampton, United Kingdom; Xiaoping Su, The University of Texas MD Anderson Cancer Center, Houston, TX.

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http://dx.doi.org/10.1200/JCO.2016.68.2955DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5477823PMC
December 2016

Prevalence of actionable mutations and copy number alterations and the price of a genomic testing panel.

Oncotarget 2016 Nov;7(44):71686-71695

Department of Health Services Research, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.18632/oncotarget.11994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5342111PMC
November 2016

Factors affecting efficiency of introducing foreign DNA and RNA into parthenogenetic or in vitro-fertilized porcine eggs by cytoplasmic microinjection.

In Vitro Cell Dev Biol Anim 2016 Aug 29;52(7):713-22. Epub 2016 Apr 29.

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, 530005, China.

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http://dx.doi.org/10.1007/s11626-016-0025-1DOI Listing
August 2016

Cancer subtypes classification using long non-coding RNA.

Oncotarget 2016 Aug;7(33):54082-54093

Groupe Hospitalier Pitié-Salpêtrière, Department of Medical Oncology, University Pierre and Marie Curie (Paris VI), Institut Universitaire de Cancérologie, AP-HP, Paris, France.

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http://dx.doi.org/10.18632/oncotarget.10213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5288243PMC
August 2016

Unique Transcriptomic Profile of Collecting Duct Carcinomas Relative to Upper Tract Urothelial Carcinomas and other Kidney Carcinomas.

Sci Rep 2016 08 3;6:30988. Epub 2016 Aug 3.

Department of Medical Oncology, Groupe Hospitalier Pitié-Salpêtrière, University Pierre and Marie Curie (Paris VI), GRC5, ONCOTYPE-Uro, Institut Universitaire de Cancérologie, Assistance-Publique Hôpitaux de Paris, 75013, France.

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http://dx.doi.org/10.1038/srep30988DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971524PMC
August 2016

Oncogenic viruses: Lessons learned using next-generation sequencing technologies.

Eur J Cancer 2016 07 5;61:61-8. Epub 2016 May 5.

University Hospital Pitié Salpêtrière, Department of Medical Oncology, University Pierre and Marie Curie, Paris, France.

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http://dx.doi.org/10.1016/j.ejca.2016.03.086DOI Listing
July 2016

TCGASpliceSeq a compendium of alternative mRNA splicing in cancer.

Nucleic Acids Res 2016 Jan 23;44(D1):D1018-22. Epub 2015 Nov 23.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/nar/gkv1288DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702910PMC
January 2016

Preclinical activity of combined HDAC and KDM1A inhibition in glioblastoma.

Neuro Oncol 2015 Nov 19;17(11):1463-73. Epub 2015 Mar 19.

Department of Pediatrics Research, University of Texas MD Anderson Cancer Center, Houston, Texas (M.M.S., B.J., J.C.); Department of Molecular and Cellular Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas (A.V., E.R.F.); Department of Molecular Carcinogenesis, University of Texas MD Anderson Cancer Center, Houston, Texas (M.B., J.C.); Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, Texas (J.Z., X.S.); Department of Neurosurgery, University of Texas MD Anderson Cancer Center, Houston, Texas (B.J., F.L.); Graduate School of Biomedical Sciences, University of Texas Health Science Center, Houston, Texas (A.V., E.R.F., M.B., F.L., J.C.).

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http://dx.doi.org/10.1093/neuonc/nov041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4648298PMC
November 2015

Reciprocal control of miR-197 and IL-6/STAT3 pathway reveals miR-197 as potential therapeutic target for hepatocellular carcinoma.

Oncoimmunology 2015 Oct 4;4(10):e1031440. Epub 2015 Jun 4.

Institute of Immunology; Zhejiang University School of Medicine ; Hangzhou, China ; National Key Laboratory of Medical Immunology & Institute of Immunology; Second Military Medical University ; Shanghai, China ; National Key Laboratory of Medical Molecular Biology & Department of Immunology; Chinese Academy of Medical Sciences; Institute of Basic Medical Sciences ; Beijing, China.

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http://dx.doi.org/10.1080/2162402X.2015.1031440DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4590029PMC
October 2015

Tet2 is required to resolve inflammation by recruiting Hdac2 to specifically repress IL-6.

Nature 2015 Sep 19;525(7569):389-393. Epub 2015 Aug 19.

National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100005, China.

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http://dx.doi.org/10.1038/nature15252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4697747PMC
September 2015

An In Vivo Method to Identify microRNA Targets Not Predicted by Computation Algorithms: p21 Targeting by miR-92a in Cancer.

Cancer Res 2015 Jul 10;75(14):2875-85. Epub 2015 Jun 10.

National Key Laboratory of Medical Immunology and Institute of Immunology, Second Military Medical University, Shanghai, P. R. China. Institute of Immunology, Zhejiang University School of Medicine, Hangzhou, P. R. China. National Key Laboratory of Medical Molecular Biology and Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Beijing, P. R. China.

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http://dx.doi.org/10.1158/0008-5472.CAN-14-2218DOI Listing
July 2015

Characterization of the effect of the histidine kinase CovS on response regulator phosphorylation in group A Streptococcus.

Infect Immun 2015 Mar 5;83(3):1068-77. Epub 2015 Jan 5.

Department of Infectious Diseases, MD Anderson Cancer Center, Houston, Texas, USA Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, USA

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http://iai.asm.org/content/83/3/1068.full.pdf
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http://iai.asm.org/lookup/doi/10.1128/IAI.02659-14
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http://dx.doi.org/10.1128/IAI.02659-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333468PMC
March 2015

miRNomes of haematopoietic stem cells and dendritic cells identify miR-30b as a regulator of Notch1.

Nat Commun 2013 ;4:2903

1] National Key Laboratory of Medical Immunology and Institute of Immunology, Second Military Medical University, Shanghai 200433, China [2].

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http://dx.doi.org/10.1038/ncomms3903DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3863901PMC
July 2014

Intrinsic basal and luminal subtypes of muscle-invasive bladder cancer.

Nat Rev Urol 2014 Jul 24;11(7):400-10. Epub 2014 Jun 24.

Department of Cancer Biology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1038/nrurol.2014.129DOI Listing
July 2014

APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development.

Cell Rep 2014 Jun 5;7(6):1833-41. Epub 2014 Jun 5.

Department of Oncology, UCL Cancer Institute, University College London, London WC1E 6BT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.05.012DOI Listing
June 2014

Concordance of genomic alterations between primary and recurrent breast cancer.

Mol Cancer Ther 2014 May 7;13(5):1382-9. Epub 2014 Mar 7.

Authors' Affiliations: Departments of Investigational Cancer Therapeutics, Surgical Oncology, Bioinformatics and Computational Biology, Pathology, Systems Biology, and Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas; Foundation Medicine, Cambridge, Massachusetts; Albany Medical College, Albany, New York; Fundacion para la Investigacion; Departments of Hematology-Oncology and Pathology, Hospital Clinico Universitario de Valencia; and INCLIVA Biomedical Research Institute, Valencia, Spain.

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http://mct.aacrjournals.org/cgi/doi/10.1158/1535-7163.MCT-13
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http://dx.doi.org/10.1158/1535-7163.MCT-13-0482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4348062PMC
May 2014

Dual-site phosphorylation of the control of virulence regulator impacts group a streptococcal global gene expression and pathogenesis.

PLoS Pathog 2014 May 1;10(5):e1004088. Epub 2014 May 1.

Department of Infectious Diseases, MD Anderson Cancer Center, Houston, Texas, United States of America; Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1004088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006921PMC
May 2014

NRAS mutation is the sole recurrent somatic mutation in large congenital melanocytic nevi.

J Invest Dermatol 2014 Apr 15;134(4):1067-1074. Epub 2013 Oct 15.

Saint Antoine Research Center, U938, Institut National de la Santé et de la Recherche Médicale (INSERM), Paris, France; Université Pierre et Marie Curie-Paris VI, Paris, France; Department of Dermatology, Hôpital Tenon, APHP, Paris, France. Electronic address:

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http://dx.doi.org/10.1038/jid.2013.429DOI Listing
April 2014

In vivo and in vitro oncogenic effects of HIF2A mutations in pheochromocytomas and paragangliomas.

Endocr Relat Cancer 2013 Jun 21;20(3):349-59. Epub 2013 May 21.

Division of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center, 7703 Floyd Curl Drive, MC 7880, San Antonio, Texas 78229-3900, USA.

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http://dx.doi.org/10.1530/ERC-13-0101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944295PMC
June 2013

VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.

Bioinformatics 2013 Jan 17;29(2):266-7. Epub 2012 Nov 17.

Department of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bts665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546792PMC
January 2013

PurityEst: estimating purity of human tumor samples using next-generation sequencing data.

Bioinformatics 2012 Sep 28;28(17):2265-6. Epub 2012 Jun 28.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3426843PMC
September 2012

Persistent host markers in pandemic and H5N1 influenza viruses.

J Virol 2007 Oct 25;81(19):10292-9. Epub 2007 Jul 25.

Hartwell Center for Bioinformatics and Biotechnology, St. Jude Children's Research Hospital, and Department of Pathology, University of Tennessee Health Science Center, Memphis, TN 38105-2794, USA.

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http://dx.doi.org/10.1128/JVI.00921-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2045501PMC
October 2007

Large-scale sequence analysis of avian influenza isolates.

Science 2006 Mar 26;311(5767):1576-80. Epub 2006 Jan 26.

Hartwell Center for Bioinformatics and Biotechnology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

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http://dx.doi.org/10.1126/science.1121586DOI Listing
March 2006

Radial glia cells are candidate stem cells of ependymoma.

Cancer Cell 2005 Oct;8(4):323-35

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, 332 North Lauderdale Street, Memphis, Tennessee 38105, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153561080500270
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http://dx.doi.org/10.1016/j.ccr.2005.09.001DOI Listing
October 2005

Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity.

Pac Symp Biocomput 2003 :466-77

Applied Biosystems, Bioinformatics R&D, 850 Lincoln Center Drive, Foster City CA 94404, USA.

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http://dx.doi.org/10.1142/9789812776303_0044DOI Listing
August 2003