Xiaoan Ruan

Xiaoan Ruan

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Xiaoan Ruan

Publications by authors named "Xiaoan Ruan"

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Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.

Cold Spring Harb Protoc 2018 08 1;2018(8). Epub 2018 Aug 1.

Function and Mechanism of Action of Thyroid Hormone Receptor Group, UMR 7221 CNRS and Muséum National d'Histoire Naturelle, Sorbonne Universités, Paris 75005, France;

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http://dx.doi.org/10.1101/pdb.prot097725DOI Listing
August 2018

Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.

Cold Spring Harb Protoc 2018 08 1;2018(8). Epub 2018 Aug 1.

Function and Mechanism of Action of Thyroid Hormone Receptor Group, UMR 7221 CNRS and Muséum National d'Histoire Naturelle, Sorbonne Universités, Paris 75005, France;

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http://dx.doi.org/10.1101/pdb.prot104620DOI Listing
August 2018

Mammalian Systems Biotechnology Reveals Global Cellular Adaptations in a Recombinant CHO Cell Line.

Cell Syst 2017 05;4(5):530-542.e6

Bioprocessing Technology Institute, Agency for Science, Technology and Research (A(∗)STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore; Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117576, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2017.04.009DOI Listing
May 2017

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

Cell 2015 Dec 10;163(7):1611-27. Epub 2015 Dec 10.

The Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06030, USA; National Key Laboratory of Crop Genetic Improvement, College of Life Sciences and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China; Department of Genetics and Genome Sciences, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, CT 06030, USA. Electronic address:

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http://www.cell.com/cell/pdf/S0092-8674(15)01504-4.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S009286741501504
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http://dx.doi.org/10.1016/j.cell.2015.11.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4734140PMC
December 2015

Deciphering the regulatory logic of an ancient, ultraconserved nuclear receptor enhancer module.

Mol Endocrinol 2015 Jun 13;29(6):856-72. Epub 2015 Apr 13.

Department of Molecular, Cellular and Developmental Biology (P.D.B., S.R., R.J.D.), University of Michigan, Ann Arbor, Michigan 48109; Department of Biological Science (R.M.B.), The University of Tulsa, Tulsa, Oklahoma 74104; Unité Mixte de Recherche 7221 (L.S., N.B.), Muséum National d'Histoire Naturelle, Centre Nationale de Recherche Scientifique, CP32 Paris, France; Neuroscience Graduate Program (J.R.K., Y.K., R.J.D.), The University of Michigan, Ann Arbor, Michigan 48109; Genome Institute of Singapore (Y.R., X.R.), 138672 Singapore; The Jackson Laboratory of Genomic Medicine (Y.R., X.R.), Farmington, Connecticut 06030; and Department of Genetics and Developmental Biology (Y.R., X.R.), University of Connecticut, Storrs, Connecticut 06269.

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http://dx.doi.org/10.1210/me.2014-1349DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4447637PMC
June 2015

Coherence analysis discriminates between retroviral integration patterns in CD34(+) cells transduced under differing clinical trial conditions.

Mol Ther Methods Clin Dev 2015 29;2:15015. Epub 2015 Apr 29.

Gene Therapy Research Unit, Children's Medical Research Institute and The Children's Hospital at Westmead , Westmead, Australia ; The University of Sydney, Discipline of Paediatrics and Child Health , Westmead, Australia.

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http://dx.doi.org/10.1038/mtm.2015.15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4445430PMC
June 2015

Systems consequences of amplicon formation in human breast cancer.

Genome Res 2014 Oct 3;24(10):1559-71. Epub 2014 Sep 3.

Cancer Therapeutics and Stratified Oncology, Genome Institute of Singapore, Genome, Singapore 138672, Singapore; The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut 06030, USA; The Jackson Laboratory, Bar Harbor, Maine 04609, USA;

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http://dx.doi.org/10.1101/gr.164871.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4199368PMC
October 2014

Landscape of transcription in human cells.

Nature 2012 Sep;489(7414):101-8

Centre for Genomic Regulation and UPF, Doctor Aiguader 88, Barcelona 08003, Catalonia, Spain.

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http://dx.doi.org/10.1038/nature11233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684276PMC
September 2012

Genome wide full-length transcript analysis using 5' and 3' paired-end-tag next generation sequencing (RNA-PET).

Methods Mol Biol 2012 ;809:535-62

Genome Institute of Singapore, Singapore, Singapore.

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http://dx.doi.org/10.1007/978-1-61779-376-9_35DOI Listing
March 2012

Genome-wide analysis reveals methyl-CpG-binding protein 2-dependent regulation of microRNAs in a mouse model of Rett syndrome.

Proc Natl Acad Sci U S A 2010 Oct 4;107(42):18161-6. Epub 2010 Oct 4.

Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1073/pnas.1005595107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2964235PMC
October 2010

Chromatin interaction analysis using paired-end tag sequencing.

Curr Protoc Mol Biol 2010 Jan;Chapter 21:Unit 21.15.1-25

Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore.

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http://dx.doi.org/10.1002/0471142727.mb2115s89DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924956PMC
January 2010

Mechanistic analysis of VDR-mediated renin suppression.

Nephron Physiol 2007 8;107(2):p35-44. Epub 2007 Aug 8.

Abbott Laboratories, Abbott Park, IL, USA.

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http://dx.doi.org/10.1159/000106792DOI Listing
November 2007

VDR-mediated gene expression patterns in resting human coronary artery smooth muscle cells.

J Cell Biochem 2007 Apr;100(6):1395-405

Department of Integrative Pharmacology, Abbott Laboratories, Abbott Park, Illinois 60064, USA.

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http://dx.doi.org/10.1002/jcb.21133DOI Listing
April 2007

Effects of Vitamin D analogs on gene expression profiling in human coronary artery smooth muscle cells.

Atherosclerosis 2006 May 10;186(1):20-8. Epub 2005 Aug 10.

Abbott Laboratories, R4CM, AP52, 200 Abbott Park Rd., Abbott Park, IL 60064, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S002191500500446
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http://dx.doi.org/10.1016/j.atherosclerosis.2005.06.046DOI Listing
May 2006

Expression of VDR and CYP24A1 mRNA in human tumors.

Cancer Chemother Pharmacol 2006 Jan 23;57(2):234-40. Epub 2005 Sep 23.

Abbott Laboratories, R4CM, AP52, 200 Abbott Park Rd., Abbott Park, IL 60064, USA.

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http://link.springer.com/10.1007/s00280-005-0059-7
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http://dx.doi.org/10.1007/s00280-005-0059-7DOI Listing
January 2006

siRNA-mediated off-target gene silencing triggered by a 7 nt complementation.

Nucleic Acids Res 2005 9;33(14):4527-35. Epub 2005 Aug 9.

Cancer Research, Global Pharmaceutical Research and Development, AP10, Abbott Laboratories 100 Abbott Park Road, Abbott Park, IL 60064, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gki762DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1184219PMC
August 2005

Cardiovascular disease in chronic kidney failure: is there a role for vitamin D analogs?

Curr Opin Investig Drugs 2005 Mar;6(3):245-54

Abbott Laboratories, R4CM Building AP52, 200 Abbott Park Road, Abbott Park, IL 60064, USA.

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March 2005

Ribosome affinity and the prolonged molecular postantibiotic effect of cethromycin (ABT-773) in Haemophilus influenzae.

Int J Antimicrob Agents 2004 Oct;24(4):362-8

Dept. R42A, Infectious Disease Research, Bldg. AP30, Abbott Laboratories, 200 Abbott Park Road, Abbott Park, IL 60064-6145, USA.

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http://dx.doi.org/10.1016/j.ijantimicag.2004.04.013DOI Listing
October 2004