Xianjun Dong

Xianjun Dong

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Xianjun Dong

Xianjun Dong

Publications by authors named "Xianjun Dong"

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22Publications

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The Role of H3K4me3 in Transcriptional Regulation Is Altered in Huntington's Disease.

PLoS One 2015 4;10(12):e0144398. Epub 2015 Dec 4.

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0144398PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670094PMC
June 2016

Association between α-synuclein blood transcripts and early, neuroimaging-supported Parkinson's disease.

Brain 2015 Sep 28;138(Pt 9):2659-71. Epub 2015 Jul 28.

1 Neurogenomics Lab and Parkinson Personalized Medicine Program, Harvard Medical School and Brigham and Women's Hospital, Cambridge, MA 02139, USA 2 Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, USA 4 Ann Romney Centre for Neurologic Diseases, Brigham and Women's Hospital, Boston, MA 02115, USA 5 Biomarkers Program, Harvard NeuroDiscovery Center, Boston, MA 02115, USA 7 Department of Neurology, Brigham and Women's Hospital, Boston, MA 02115, USA

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http://dx.doi.org/10.1093/brain/awv202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4643625PMC
September 2015

Two independent transcription initiation codes overlap on vertebrate core promoters.

Nature 2014 Mar 16;507(7492):381-385. Epub 2014 Feb 16.

Institute of Clinical Sciences and MRC Clinical Sciences Center, Faculty of Medicine, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, United Kingdom.

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http://dx.doi.org/10.1038/nature12974DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4820030PMC
March 2014

MicroRNAs located in the Hox gene clusters are implicated in huntington's disease pathogenesis.

PLoS Genet 2014 Feb 27;10(2):e1004188. Epub 2014 Feb 27.

Department of Neurology, Boston University School of Medicine, Boston, Massachusetts, United States of America ; Genome Science Institute, Boston University School of Medicine, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3937267PMC
February 2014

An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes.

Mol Cell 2013 Apr 21;50(1):67-81. Epub 2013 Mar 21.

Department of Biochemistry and Molecular Pharmacology, Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.molcel.2013.02.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3671569PMC
April 2013

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D171-6. Epub 2012 Nov 29.

Program in Bioinformatics and Integrative Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1093/nar/gks1221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531197PMC
January 2013

Ammonia sensing behaviors of TiO2-PANI/PA6 composite nanofibers.

Sensors (Basel) 2012 Dec 12;12(12):17046-57. Epub 2012 Dec 12.

Key Laboratory of Eco-Textiles, Ministry of Education, Jiangnan University, Wuxi 214122, Jiangsu, China.

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http://dx.doi.org/10.3390/s121217046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571825PMC
December 2012

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.

Genome Res 2012 Sep;22(9):1798-812

Program in Bioinformatics and Integrative Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.

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http://dx.doi.org/10.1101/gr.139105.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431495PMC
September 2012

Modeling gene expression using chromatin features in various cellular contexts.

Genome Biol 2012 Jun 13;13(9):R53. Epub 2012 Jun 13.

Program in Bioinformatics and Integrative Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1186/gb-2012-13-9-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491397PMC
June 2012

Making enhancers from spare parts of the genome.

Genome Biol 2011 Dec 29;12(12):138. Epub 2011 Dec 29.

Institute of Clinical Sciences, Imperial College London and MRC Clinical Sciences Centre, Hammersmith Hospital Campus, Du Cane Road, London, UK.

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http://dx.doi.org/10.1186/gb-2011-12-12-138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334608PMC
December 2011

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.

Nucleic Acids Res 2010 Mar 6;38(4):1071-85. Epub 2009 Dec 6.

Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Thormøhlensgate 55, N-5008 Bergen, Norway.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkp1124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2831330PMC
March 2010

Translog, a web browser for studying the expression divergence of homologous genes.

BMC Bioinformatics 2010 Jan 18;11 Suppl 1:S59. Epub 2010 Jan 18.

Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Thormøhlensgate 55, N-5008 Bergen, Norway.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-11-S1-S59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3009532PMC
January 2010

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes.

Genome Biol 2009 21;10(8):R86. Epub 2009 Aug 21.

Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Thormøhlensgate 55, N-5008 Bergen, Norway.

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http://dx.doi.org/10.1186/gb-2009-10-8-r86DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745767PMC
October 2009

Transcriptional features of genomic regulatory blocks.

Genome Biol 2009 19;10(4):R38. Epub 2009 Apr 19.

Computational Biology Unit, Bergen Center for Computational Science, and Sars Centre for Marine Molecular Biology, University of Bergen, 5008 Bergen, Norway.

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http://dx.doi.org/10.1186/gb-2009-10-4-r38DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688929PMC
September 2009

Differential evolution of the 13 Atlantic salmon Hox clusters.

Mol Biol Evol 2008 Jul 18;25(7):1333-43. Epub 2008 Apr 18.

Sars International Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgt. 55, Bergen, Norway.

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http://dx.doi.org/10.1093/molbev/msn097DOI Listing
July 2008