Xiangqin Cui

Xiangqin Cui

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Xiangqin Cui

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Adverse Outcomes Associated With Inpatient Administration of Beers List Medications Following Total Knee Replacement.

Clin Ther 2020 Apr 3;42(4):592-604.e1. Epub 2020 Apr 3.

Veterans Affairs Central Ohio Health Care System, Columbus, OH, USA.

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http://dx.doi.org/10.1016/j.clinthera.2020.02.017DOI Listing
April 2020

Collective effects of long-range DNA methylations predict gene expressions and estimate phenotypes in cancer.

Sci Rep 2020 Mar 3;10(1):3920. Epub 2020 Mar 3.

Center for Precision Health, School of Biomedical Informatics, School of Public Health, University of Texas Health Center at Houston, Houston, Texas, United States.

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http://dx.doi.org/10.1038/s41598-020-60845-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054398PMC
March 2020

Use of FEF25-75% to Guide IgG Dosing to Protect Pulmonary Function in CVID.

J Clin Immunol 2020 Feb 3;40(2):310-320. Epub 2020 Jan 3.

Department of Medicine, University of Alabama at Birmingham, 1825 University Blvd, Birmingham, AL, 35233, USA.

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http://dx.doi.org/10.1007/s10875-019-00730-4DOI Listing
February 2020

Predicting gene expression using DNA methylation in three human populations.

PeerJ 2019 1;7:e6757. Epub 2019 May 1.

Department of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, United States of America.

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http://dx.doi.org/10.7717/peerj.6757DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6500370PMC
May 2019

Absorbance summation: A novel approach for analyzing high-throughput ELISA data in the absence of a standard.

PLoS One 2018 8;13(6):e0198528. Epub 2018 Jun 8.

Department of Biostatistics, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0198528PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993274PMC
December 2018

Associations Between Race, Perceived Psychological Stress, and the Gut Microbiota in a Sample of Generally Healthy Black and White Women: A Pilot Study on the Role of Race and Perceived Psychological Stress.

Psychosom Med 2018 09;80(7):640-648

From the Division of Preventive Medicine (Carson, Baskin), Department of Medicine, School of Medicine, Comprehensive Cancer Center (Carson, Baskin), and Department of Biostatistics (Wang, Cui), School of Public Health, University of Alabama at Birmingham; Center for Outcomes Research (Jackson), JPS Health Network, Fort Worth, Texas; Department of Biostatistics and Epidemiology (Jackson), UNT Health Science Center, School of Public Health, Fort Worth, Texas; and Center for Clinical and Translational Sciences (Van Der Pol, Lefkowitz), and Department of Microbiology (Lefkowitz) and Department of Cell, Developmental and Integrative Biology (Morrow), University of Alabama at Birmingham.

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http://Insights.ovid.com/crossref?an=00006842-201809000-0000
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http://dx.doi.org/10.1097/PSY.0000000000000614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6113071PMC
September 2018

G protein-coupled estrogen receptor regulates embryonic heart rate in zebrafish.

PLoS Genet 2017 Oct 24;13(10):e1007069. Epub 2017 Oct 24.

Department of Pharmacology & Toxicology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5669493PMC
October 2017

Pdgfrb is a direct regulatory target of TGFβ signaling in atrioventricular cushion mesenchymal cells.

PLoS One 2017 20;12(4):e0175791. Epub 2017 Apr 20.

Division of Research, Department of Genetics, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0175791PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5398542PMC
September 2017

Cross-Sectional Positive Association of Serum Lipids and Blood Pressure With Serum Sodium Within the Normal Reference Range of 135-145 mmol/L.

Arterioscler Thromb Vasc Biol 2017 03 29;37(3):598-606. Epub 2016 Dec 29.

From the Bioinformatics and Systems Biology Core, Systems Biology Center (S.G., X.W.), Renal Cellular and Molecular Biology Section, Systems Biology Center (M.B.B., N.I.D.), and Laboratory of Cardiovascular and Regenerative Medicine, Center for Molecular Medicine (N.I.D.), National Heart, Lung and Blood Institute, Bethesda, MD; and Department of Biostatistics, University of Alabama at Birmingham (X.C.).

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http://dx.doi.org/10.1161/ATVBAHA.116.308413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376346PMC
March 2017

Negative binomial mixed models for analyzing microbiome count data.

BMC Bioinformatics 2017 Jan 3;18(1). Epub 2017 Jan 3.

Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL, 35294-0022, USA.

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http://dx.doi.org/10.1186/s12859-016-1441-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209949PMC
January 2017

Combinatorial epigenetic mechanisms and efficacy of early breast cancer inhibition by nutritive botanicals.

Epigenomics 2016 08 1;8(8):1019-37. Epub 2016 Aug 1.

Department of Biology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.

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http://dx.doi.org/10.2217/epi-2016-0024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066124PMC
August 2016

Transforming Growth Factor Beta (TGF-β) Is a Muscle Biomarker of Disease Progression in ALS and Correlates with Smad Expression.

PLoS One 2015 16;10(9):e0138425. Epub 2015 Sep 16.

Department of Neurology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America; Birmingham VA Medical Center, Birmingham, Alabama, United States of America; Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America; Department of Genetics, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0138425PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574401PMC
June 2016

Genetic and Informatic Analyses Implicate Kif12 as a Candidate Gene within the Mpkd2 Locus That Modulates Renal Cystic Disease Severity in the Cys1cpk Mouse.

PLoS One 2015 21;10(8):e0135678. Epub 2015 Aug 21.

Department of Genetics, The University of Alabama at Birmingham, Birmingham, AL 35294, United States of America; Center for Translational Science, Children's National Health System, Washington, DC 20010, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135678PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4546649PMC
May 2016

A Fucus vesiculosus extract inhibits estrogen receptor activation and induces cell death in female cancer cell lines.

BMC Complement Altern Med 2016 May 28;16:151. Epub 2016 May 28.

Department of Epidemiology, University of Alabama at Birmingham, 1665 University Boulevard, Birmingham, AL, 35294, USA.

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http://dx.doi.org/10.1186/s12906-016-1129-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4884380PMC
May 2016

A Sequence Kernel Association Test for Dichotomous Traits in Family Samples under a Generalized Linear Mixed Model.

Hum Hered 2015 10;79(2):60-8. Epub 2015 Mar 10.

Department of Biostatistics, University of Alabama at Birmingham, Birmingham, Ala., USA.

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http://dx.doi.org/10.1159/000375409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4825859PMC
March 2016

Multigroup Equivalence Analysis for High-Dimensional Expression Data.

Cancer Inform 2015 23;14(Suppl 2):253-63. Epub 2015 Nov 23.

Department of Biostatistics, Section on Statistical Genetics, University of Alabama at Birmingham, Ryals School of Public Health, Birmingham, AL, USA.

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http://dx.doi.org/10.4137/CIN.S17304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659441PMC
December 2015

SNP Formation Bias in the Murine Genome Provides Evidence for Parallel Evolution.

Genome Biol Evol 2015 Aug 6;7(9):2506-19. Epub 2015 Aug 6.

Department of Pediatrics, Emory University School of Medicine

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http://dx.doi.org/10.1093/gbe/evv150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4607513PMC
August 2015

Critical roles of miRNA-mediated regulation of TGFβ signalling during mouse cardiogenesis.

Cardiovasc Res 2014 Jul 16;103(2):258-67. Epub 2014 May 16.

Division of Research, Department of Genetics, The University of Alabama at Birmingham, 720 20th St. S., 768 Kaul Building, Birmingham AL 35294, USA

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http://dx.doi.org/10.1093/cvr/cvu126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110444PMC
July 2014

Kernel-machine testing coupled with a rank-truncation method for genetic pathway analysis.

Genet Epidemiol 2014 Jul 21;38(5):447-56. Epub 2014 May 21.

Department of Biostatistics, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://dx.doi.org/10.1002/gepi.21813DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073214PMC
July 2014

Applying shrinkage variance estimators to the TOST test in high dimensional settings.

Stat Appl Genet Mol Biol 2014 Jun;13(3):323-41

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http://dx.doi.org/10.1515/sagmb-2013-0045DOI Listing
June 2014

Portion sizes for children are predicted by parental characteristics and the amounts parents serve themselves.

Am J Clin Nutr 2014 Apr 29;99(4):763-70. Epub 2014 Jan 29.

Department of Pediatrics, Section of Nutrition, University of Colorado Anschutz Medical Campus, Aurora, Colorado (SLJ); the Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX (SOH, TN, YL, and KV); the Office of Energetics, Nutrition Obesity Research Center, and Section on Statistical Genetics, Department of Biostatistics, University of Alabama Birmingham, Birmingham, AL (DBA, XC, and XL); the Department of Human Development, Washington State University, Pullman, Washington (TGP); and the Departments of Food, Bioprocessing, and Nutrition Sciences, North Carolina State University, Raleigh, NC (LSG).

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http://dx.doi.org/10.3945/ajcn.113.078311DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3953879PMC
April 2014

BCRgt: a Bayesian cluster regression-based genotyping algorithm for the samples with copy number alterations.

BMC Bioinformatics 2014 Mar 15;15:74. Epub 2014 Mar 15.

Biostatistics Program, School of Public Health, LSU Health Sciences Center, 2020 Gravier Street, New Orleans, LA 70115, USA.

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http://dx.doi.org/10.1186/1471-2105-15-74DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4003822PMC
March 2014

Gene expression patterns in peripheral blood cells associated with radiographic severity in African Americans with early rheumatoid arthritis.

Rheumatol Int 2013 Jan 12;33(1):129-37. Epub 2012 Jan 12.

Division of Clinical Immunology and Rheumatology, Department of Medicine, University of Alabama at Birmingham, 1530 3rd Avenue South, SHEL 178, Birmingham, AL 35294-2182, USA.

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http://dx.doi.org/10.1007/s00296-011-2355-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769702PMC
January 2013

Statistics for next generation sequencing - meeting report.

Front Genet 2012 13;3:128. Epub 2012 Jul 13.

Department of Biostatistics and Bioinformatics, Emory University Atlanta, GA, USA.

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http://dx.doi.org/10.3389/fgene.2012.00128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395795PMC
October 2012

Uniform approximation is more appropriate for Wilcoxon Rank-Sum Test in gene set analysis.

PLoS One 2012 7;7(2):e31505. Epub 2012 Feb 7.

Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, Louisiana, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0031505PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3274536PMC
July 2012

Dynamic molecular and histopathological changes in the extracellular matrix and inflammation in the transition to heart failure in isolated volume overload.

Am J Physiol Heart Circ Physiol 2011 Jun 18;300(6):H2251-60. Epub 2011 Mar 18.

Center for Heart Failure Research, Division of Cardiology, Univ. of Alabama at Birmingham, 434 BMR2, 1530 3rd Ave. S., Birmingham, AL 35294-2180, USA.

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http://dx.doi.org/10.1152/ajpheart.01104.2010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3119090PMC
June 2011

Design and validation issues in RNA-seq experiments.

Brief Bioinform 2011 May 15;12(3):280-7. Epub 2011 Apr 15.

Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, USA.

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http://dx.doi.org/10.1093/bib/bbr004DOI Listing
May 2011

Genes and biochemical pathways in human skeletal muscle affecting resting energy expenditure and fuel partitioning.

J Appl Physiol (1985) 2011 Mar 25;110(3):746-55. Epub 2010 Nov 25.

Dept. of Nutrition Sciences, The Univ. of Alabama at Birmingham, 1675 University Blvd., Birmingham, AL 35294-3360, USA.

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http://dx.doi.org/10.1152/japplphysiol.00293.2010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3070475PMC
March 2011

Length bias correction for RNA-seq data in gene set analyses.

Bioinformatics 2011 Mar 19;27(5):662-9. Epub 2011 Jan 19.

Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3042188PMC
March 2011

Renal CD14 expression correlates with the progression of cystic kidney disease.

Kidney Int 2010 Sep 16;78(6):550-60. Epub 2010 Jun 16.

Department of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, USA.

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http://dx.doi.org/10.1038/ki.2010.175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422025PMC
September 2010

Evaluation of a statistical equivalence test applied to microarray data.

J Biopharm Stat 2010 Mar;20(2):240-66

Department of Statistics, University of Missouri, Columbia, Missouri, USA.

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http://dx.doi.org/10.1080/10543400903572738DOI Listing
March 2010

Validation of endogenous internal real-time PCR controls in renal tissues.

Am J Nephrol 2009 1;30(5):413-7. Epub 2009 Sep 1.

Department of Medicine, University of Alabama at Birmingham, 1900 University Blvd, Tinsley Harrison Tower 611J, Birmingham, AL 35294, USA.

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http://dx.doi.org/10.1159/000235993DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818397PMC
February 2010

Differential genomic responses in old vs. young humans despite similar levels of modest muscle damage after resistance loading.

Physiol Genomics 2010 Feb 10;40(3):141-9. Epub 2009 Nov 10.

Department of Physiology and Biophysics, University of Alabama at Birmingham, Birmingham, AL 35294-0005, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00151.2009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2825766PMC
February 2010

Single nucleotide polymorphisms affect both cis- and trans-eQTLs.

Genomics 2009 Jun 25;93(6):501-8. Epub 2009 Feb 25.

Department of Biostatistics, Section on Statistical Genetics, School of Public Health, University of Alabama at Birmingham, AL 35209, USA.

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http://dx.doi.org/10.1016/j.ygeno.2009.01.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4041081PMC
June 2009

Consistency analysis of redundant probe sets on affymetrix three-prime expression arrays and applications to differential mRNA processing.

PLoS One 2009 23;4(1):e4229. Epub 2009 Jan 23.

Department of Biostatistics, University of Alabama, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004229PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2621337PMC
April 2009

Repeatability of published microarray gene expression analyses.

Nat Genet 2009 Feb 28;41(2):149-55. Epub 2008 Jan 28.

Clinical and Molecular Epidemiology Unit, Department of Hygiene and Epidemiology, University of Ioannina School of Medicine, Ioannina 45110, Greece.

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http://dx.doi.org/10.1038/ng.295DOI Listing
February 2009

Methods for nutrigenomics and longevity studies in Drosophila: effects of diets high in sucrose, palmitic acid, soy, or beef.

Methods Mol Biol 2007 ;371:111-41

Department of Environmental Health Sciences, University of Alabama at Birmingham, Birmingham, AL, USA.

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http://dx.doi.org/10.1007/978-1-59745-361-5_10DOI Listing
September 2007

Global correlation analysis between redundant probe sets using a large collection of Arabidopsis ath1 expression profiling data.

Comput Syst Bioinformatics Conf 2006 :223-6

Section on Statistical Genetics, Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA.

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June 2007

An adaptive alpha spending algorithm improves the power of statistical inference in microarray data analysis.

Bioinformation 2007 Apr 10;1(10):384-9. Epub 2007 Apr 10.

Genomic Technologies Section - Research Technology Branch, NIH / NIAID, 50 South Drive, Room 5505, Bethesda, MD 20892-8005, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1896052PMC
http://dx.doi.org/10.6026/97320630001384DOI Listing
April 2007

Analysis of the wheat endosperm transcriptome.

J Appl Genet 2006 ;47(4):287-302

Western Regional Research Center, USDA-ARS Buchanan Street, Albany, CA 94710, USA.

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http://dx.doi.org/10.1007/BF03194638DOI Listing
February 2007

The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle.

Endocrine 2007 Feb;31(1):5-17

Department of Nutrition Sciences, University of Alabama at Birmingham, 1675 University Boulevard, Birmingham, AL 35294-3360, USA.

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http://dx.doi.org/10.1007/s12020-007-0007-xDOI Listing
February 2007

Inheritance patterns of transcript levels in F1 hybrid mice.

Genetics 2006 Oct 3;174(2):627-37. Epub 2006 Aug 3.

Department of Biostatistics, Section on Statistical Genetics, Department of Medicine, Genetic and Translational Medicine Division, University of Alabama, Alabama 35294, USA.

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http://dx.doi.org/10.1534/genetics.106.060251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1602077PMC
October 2006

Transformations for cDNA microarray data.

Stat Appl Genet Mol Biol 2003 18;2:Article4. Epub 2003 Jun 18.

The Jackson Laboratory.

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http://dx.doi.org/10.2202/1544-6115.1009DOI Listing
May 2006

Microarray data analysis: from disarray to consolidation and consensus.

Nat Rev Genet 2006 Jan;7(1):55-65

Section on Statistical Genetics, Department of Biostatistics, Ryals Public Health Building, 1665 University Avenue, University of Alabama at Birmingham, Alabama 35294-0022, USA.

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http://dx.doi.org/10.1038/nrg1749DOI Listing
January 2006

Kinesin family member 12 is a candidate polycystic kidney disease modifier in the cpk mouse.

J Am Soc Nephrol 2005 Apr 23;16(4):905-16. Epub 2005 Feb 23.

Department of Medicine, University of Alabama at Birmingham, 740 Kaul Human Genetics Building, 720 20th Street South, Birmingham, AL 35294, USA.

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http://dx.doi.org/10.1681/ASN.2004121083DOI Listing
April 2005

Exploration of low-dose estrogen effects: identification of No Observed Transcriptional Effect Level (NOTEL).

Toxicol Pathol 2004 Jul-Aug;32(4):482-92

National Center for Toxicogenomics, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA.

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http://dx.doi.org/10.1080/01926230490483324DOI Listing
February 2005

Improved statistical tests for differential gene expression by shrinking variance components estimates.

Biostatistics 2005 Jan;6(1):59-75

The Jackson Laboratory, Bar Harbor, Maine 04609, USA.

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http://dx.doi.org/10.1093/biostatistics/kxh018DOI Listing
January 2005

Statistical tests for differential expression in cDNA microarray experiments.

Genome Biol 2003 17;4(4):210. Epub 2003 Mar 17.

The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine 04609, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC154570PMC
http://dx.doi.org/10.1186/gb-2003-4-4-210DOI Listing
May 2003

Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize.

Genetics 2003 Feb;163(2):685-98

Interdepartmental Genetics Program, United States Department of Agriculture-Agricultural Research Service, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462470PMC
February 2003

Characterization of the aldehyde dehydrogenase gene families of Zea mays and Arabidopsis.

Plant Mol Biol 2002 Mar-Apr;48(5-6):751-64

Department of Zoology & Genetics, Iowa State University, Ames 50011, USA.

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http://dx.doi.org/10.1023/a:1014870429630DOI Listing
June 2002