William York

William York

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William York

Publications by authors named "William York"

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Development of a thermophilic coculture for corn fiber conversion to ethanol.

Nat Commun 2020 Apr 22;11(1):1937. Epub 2020 Apr 22.

Thayer School of Engineering, Dartmouth College, Hanover, NH, 03755, USA.

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http://dx.doi.org/10.1038/s41467-020-15704-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176698PMC
April 2020

Analytical Techniques for Determining the Role of Domain of Unknown Function 579 Proteins in the Synthesis of -Methylated Plant Polysaccharides.

SLAS Technol 2020 Mar 23:2472630320912692. Epub 2020 Mar 23.

Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA.

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http://dx.doi.org/10.1177/2472630320912692DOI Listing
March 2020

The GlySpace Alliance: toward a collaborative global glycoinformatics community.

Glycobiology 2020 01;30(2):70-71

Department of Molecular Sciences, Faculty of Science & Engineering, Rm 307, Building E8C, Macquarie University, Sydney, NSW 2109, Australia.

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http://dx.doi.org/10.1093/glycob/cwz078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6992953PMC
January 2020

Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum).

Plant Biotechnol J 2019 03 17;17(3):580-593. Epub 2018 Sep 17.

BioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX, USA.

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http://dx.doi.org/10.1111/pbi.13000DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6381781PMC
March 2019

RElative QUantitation Inferred by Evaluating Mixtures (REQUIEM).

Anal Chim Acta 2017 Nov 4;993:22-37. Epub 2017 Oct 4.

Complex Carbohydrate Research Center, 315 Riverbend Rd, Athens, GA 30602, USA; The Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA. Electronic address:

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http://dx.doi.org/10.1016/j.aca.2017.09.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5735846PMC
November 2017

Designer biomass for next-generation biorefineries: leveraging recent insights into xylan structure and biosynthesis.

Biotechnol Biofuels 2017 30;10:286. Epub 2017 Nov 30.

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA USA.

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http://dx.doi.org/10.1186/s13068-017-0973-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5708106PMC
November 2017

GLYDE-II: The GLYcan data exchange format.

Perspect Sci (Neth) 2017 Jan 20;11:24-30. Epub 2016 Oct 20.

Complex Carbohydrate Research Center, University of Georgia, USA.

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http://dx.doi.org/10.1016/j.pisc.2016.05.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5611833PMC
January 2017

Structural diversity of xylans in the cell walls of monocots.

Planta 2016 Sep 22;244(3):589-606. Epub 2016 Apr 22.

Complex Carbohydrate Research Center and US Department of Energy Bioenergy Science Center, University of Georgia, Athens, GA, 30602, USA.

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http://dx.doi.org/10.1007/s00425-016-2527-1DOI Listing
September 2016

GlycomeDB.

Methods Mol Biol 2015 ;1273:109-24

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602-4712, USA,

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http://dx.doi.org/10.1007/978-1-4939-2343-4_8DOI Listing
November 2015

Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in Arabidopsis.

Plant Physiol 2015 Apr 11;167(4):1296-306. Epub 2015 Feb 11.

Complex Carbohydrate Research Center (Y.K., M.J.P., U.A., S.P., S.T.T., M.G.H., A.G.D., W.S.Y., M.A.O.), Department of Plant Biology (M.G.H.), and Department of Biochemistry and Molecular Biology (A.G.D., W.S.Y.), University of Georgia, Athens, Georgia 30602;Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong 266101, China (Y.K.);United States Department of Energy Plant Research Laboratory (L.R., F.B.) and United States Department of Energy Great Lakes Bioenergy Research Center (F.B.), Michigan State University, East Lansing, Michigan 48824; andDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut 06269 (X.L., W.-D.R.)

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http://dx.doi.org/10.1104/pp.114.255943DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378170PMC
April 2015

Qrator: a web-based curation tool for glycan structures.

Glycobiology 2015 Jan 27;25(1):66-73. Epub 2014 Aug 27.

Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602-7404, USA.

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http://dx.doi.org/10.1093/glycob/cwu090DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245907PMC
January 2015

EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data.

Bioinformatics 2015 Jan 12;31(2):242-5. Epub 2014 Sep 12.

Department of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287942PMC
January 2015

Generation and structural validation of a library of diverse xyloglucan-derived oligosaccharides, including an update on xyloglucan nomenclature.

Carbohydr Res 2015 Jan 9;402:56-66. Epub 2014 Jul 9.

Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Rd, Athens, GA 30602, USA; Department of Biochemistry and Molecular Biology, The University of Georgia, Athens, GA 30602, USA. Electronic address:

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http://dx.doi.org/10.1016/j.carres.2014.06.031DOI Listing
January 2015

Two Arabidopsis proteins synthesize acetylated xylan in vitro.

Plant J 2014 Oct 20;80(2):197-206. Epub 2014 Sep 20.

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.

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http://doi.wiley.com/10.1111/tpj.12643
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http://dx.doi.org/10.1111/tpj.12643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184958PMC
October 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

Structural characterization of the heteroxylans from poplar and switchgrass.

Methods Mol Biol 2012 ;908:215-28

Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA.

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http://link.springer.com/10.1007/978-1-61779-956-3_19
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http://dx.doi.org/10.1007/978-1-61779-956-3_19DOI Listing
December 2012

A galacturonic acid-containing xyloglucan is involved in Arabidopsis root hair tip growth.

Plant Cell 2012 Nov 21;24(11):4511-24. Epub 2012 Nov 21.

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1105/tpc.112.103390DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531849PMC
November 2012

4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein.

Proc Natl Acad Sci U S A 2012 Aug 14;109(35):14253-8. Epub 2012 Aug 14.

Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1073/pnas.1208097109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435161PMC
August 2012

Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains.

Proc Natl Acad Sci U S A 2012 Apr 6;109(17):6537-42. Epub 2012 Apr 6.

Institute for Cell and Molecular Biosciences, Newcastle University, The Medical School, Newcastle upon Tyne NE2 4HH, United Kingdom.

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http://dx.doi.org/10.1073/pnas.1117686109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3340039PMC
April 2012

The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes.

Glycobiology 2012 Mar 2;22(3):439-51. Epub 2011 Nov 2.

Complex Carbohydrate Research Center and US Department of Energy Bioenergy Science Center, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/glycob/cwr117DOI Listing
March 2012

Structure and function of an arabinoxylan-specific xylanase.

J Biol Chem 2011 Jun 4;286(25):22510-20. Epub 2011 Mar 4.

Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade Técnica de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal.

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http://www.jbc.org/content/286/25/22510.full.pdf
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http://www.jbc.org/cgi/doi/10.1074/jbc.M110.217315
Publisher Site
http://dx.doi.org/10.1074/jbc.M110.217315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121396PMC
June 2011

Interaction of Nectarin 4 with a fungal protein triggers a microbial surveillance and defense mechanism in nectar.

Phytochemistry 2010 Dec 21;71(17-18):1963-9. Epub 2010 Oct 21.

Department of Biochemistry, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.

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http://dx.doi.org/10.1016/j.phytochem.2010.09.009DOI Listing
December 2010

Structural analysis of arabinoxylans isolated from ball-milled switchgrass biomass.

Carbohydr Res 2010 Oct 30;345(15):2183-93. Epub 2010 Jul 30.

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.

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http://bioenergycenter.org/besc/publications/mazumder_struct
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http://linkinghub.elsevier.com/retrieve/pii/S000862151000319
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http://dx.doi.org/10.1016/j.carres.2010.07.034DOI Listing
October 2010

Improved procedures for the selective chemical fragmentation of rhamnogalacturonans.

Carbohydr Res 2009 Sep 3;344(14):1852-7. Epub 2008 Dec 3.

Complex Carbohydrate Research Center, University of Georgia, Athens, 30602, USA.

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http://dx.doi.org/10.1016/j.carres.2008.11.011DOI Listing
September 2009

Moss and liverwort xyloglucans contain galacturonic acid and are structurally distinct from the xyloglucans synthesized by hornworts and vascular plants.

Glycobiology 2008 Nov 14;18(11):891-904. Epub 2008 Aug 14.

Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.

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https://academic.oup.com/glycob/article-lookup/doi/10.1093/g
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http://dx.doi.org/10.1093/glycob/cwn078DOI Listing
November 2008

Biochemical control of xylan biosynthesis - which end is up?

Curr Opin Plant Biol 2008 Jun 18;11(3):258-65. Epub 2008 Apr 18.

Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, The University of Georgia, Athens, GA 30602, United States.

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http://dx.doi.org/10.1016/j.pbi.2008.02.007DOI Listing
June 2008

Regulation of glycan structures in animal tissues: transcript profiling of glycan-related genes.

J Biol Chem 2008 Jun 14;283(25):17298-313. Epub 2008 Apr 14.

Complex Carbohydrate Research Center and the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1074/jbc.M801964200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427342PMC
June 2008

Quantitation by isobaric labeling: applications to glycomics.

J Proteome Res 2008 Jan 30;7(1):367-74. Epub 2007 Nov 30.

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, Georgia 30602-4712, USA.

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http://dx.doi.org/10.1021/pr070476iDOI Listing
January 2008

Important new players in secondary wall synthesis.

Trends Plant Sci 2006 Apr 14;11(4):162-4. Epub 2006 Mar 14.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1016/j.tplants.2006.02.001DOI Listing
April 2006

Selective chemical depolymerization of rhamnogalacturonans.

Carbohydr Res 2006 Mar 18;341(4):474-84. Epub 2006 Jan 18.

Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602-4712, USA.

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http://dx.doi.org/10.1016/j.carres.2005.12.004DOI Listing
March 2006

Simple modification of a protein database for mass spectral identification of N-linked glycopeptides.

Rapid Commun Mass Spectrom 2005 ;19(21):3002-6

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602-4712, USA.

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http://dx.doi.org/10.1002/rcm.2162DOI Listing
December 2005

GLYDE-an expressive XML standard for the representation of glycan structure.

Carbohydr Res 2005 Dec 20;340(18):2802-7. Epub 2005 Oct 20.

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602-4712, USA.

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http://dx.doi.org/10.1016/j.carres.2005.09.019DOI Listing
December 2005

Nectarin IV, a potent endoglucanase inhibitor secreted into the nectar of ornamental tobacco plants. Isolation, cloning, and characterization.

Plant Physiol 2005 Nov 21;139(3):1389-400. Epub 2005 Oct 21.

Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IW 50011, USA.

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http://dx.doi.org/10.1104/pp.105.065227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1283774PMC
November 2005

NMR characterization of endogenously O-acetylated oligosaccharides isolated from tomato (Lycopersicon esculentum) xyloglucan.

Carbohydr Res 2005 Aug;340(11):1818-25

Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602-4712, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S000862150500215
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http://dx.doi.org/10.1016/j.carres.2005.04.015DOI Listing
August 2005

Structural analysis of xyloglucans in the primary cell walls of plants in the subclass Asteridae.

Carbohydr Res 2005 Aug;340(11):1826-40

Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602-4712, USA.

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http://dx.doi.org/10.1016/j.carres.2005.04.016DOI Listing
August 2005

CONDORR--CONstrained Dynamics of Rigid Residues: a molecular dynamics program for constrained molecules.

J Mol Model 2004 Aug 3;10(4):271-89. Epub 2004 Aug 3.

Complex Carbohydrate Research Center, 315 Riverbend Road, GA 30602, Athens, USA.

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http://link.springer.com/10.1007/s00894-004-0193-x
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http://dx.doi.org/10.1007/s00894-004-0193-xDOI Listing
August 2004

Proteinaceous inhibitors of endo-beta-glucanases.

Biochim Biophys Acta 2004 Feb;1696(2):223-33

Department of Biochemistry and Molecular Biology, Complex Carbohydrate Research Center, University of Georgia, 220 Riverbend Road, Athens, GA 30602-4712, USA.

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http://dx.doi.org/10.1016/j.bbapap.2003.07.003DOI Listing
February 2004

Analysis of xyloglucan fucosylation in Arabidopsis.

Plant Physiol 2003 Jun 24;132(2):768-78. Epub 2003 Apr 24.

Michigan State University-Department of Energy Plant Research Laboratory, East Lansing, Michigan, USA.

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http://dx.doi.org/10.1104/pp.102.016642DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC167016PMC
June 2003

Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase.

Plant J 2003 May;34(3):327-38

Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, 220 Riverbend Road, University of Georgia, Athens 30602-4712, USA.

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http://dx.doi.org/10.1046/j.1365-313x.2003.01726.xDOI Listing
May 2003

Structure of the xyloglucan produced by suspension-cultured tomato cells.

Carbohydr Res 2003 May;338(11):1197-208

Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, University of Georgia, 220 Riverbend Road, Athens, GA 30602-4712, USA.

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http://dx.doi.org/10.1016/s0008-6215(03)00079-xDOI Listing
May 2003

Primary structure of the 2-O-methyl-alpha-L-fucose-containing side chain of the pectic polysaccharide, rhamnogalacturonan II.

Carbohydr Res 2003 Feb;338(4):341-52

Complex Carbohydrate Research Center, Department of Chemistry, The University of Georgia, 220 Riverbend Road, Athens, GA 30602-4712, USA.

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http://dx.doi.org/10.1016/s0008-6215(02)00461-5DOI Listing
February 2003

Bradyoxetin, a unique chemical signal involved in symbiotic gene regulation.

Proc Natl Acad Sci U S A 2002 Oct 22;99(22):14446-51. Epub 2002 Oct 22.

Department of Plant Microbiology and Pathology, University of Missouri, Columbia, MO 65211, USA.

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http://dx.doi.org/10.1073/pnas.222336799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC137903PMC
October 2002