Willem M de Vos

Willem M de Vos

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Willem M de Vos

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The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut.

Microbiol Mol Biol Rev 2019 05 13;83(2). Epub 2019 Mar 13.

Laboratory of Microbiology, Wageningen University and Research, Wageningen, The Netherlands.

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http://mmbr.asm.org/lookup/doi/10.1128/MMBR.00054-18
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http://dx.doi.org/10.1128/MMBR.00054-18DOI Listing
May 2019

Enhanced nutrient supply and intestinal microbiota development in very low birth weight infants.

Pediatr Res 2019 May 14. Epub 2019 May 14.

Department of Nutrition, Institute of Basic Medical Sciences, Faculty of Medicine, University of Oslo, Oslo, Norway.

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http://www.nature.com/articles/s41390-019-0412-x
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http://dx.doi.org/10.1038/s41390-019-0412-xDOI Listing
May 2019

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes.

Curr Opin Biotechnol 2019 Apr 5;58:146-154. Epub 2019 Apr 5.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands; Human Microbiome Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1016/j.copbio.2019.03.009DOI Listing
April 2019

The Effect of Allogenic Versus Autologous Fecal Microbiota Transfer on Symptoms, Visceral Perception and Fecal and Mucosal Microbiota in Irritable Bowel Syndrome: A Randomized Controlled Study.

Clin Transl Gastroenterol 2019 Apr;10(4):e00034

Nutrition-Gut-Brain Interactions Research Centre, Faculty of Health and Medicine, School of Medical Sciences, Örebro University, Örebro, Sweden.

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http://dx.doi.org/10.14309/ctg.0000000000000034DOI Listing
April 2019

Long-term impact of oral vancomycin, ciprofloxacin and metronidazole on the gut microbiota in healthy humans.

J Antimicrob Chemother 2019 Mar;74(3):782-786

Amsterdam UMC, University of Amsterdam, Center for Experimental and Molecular Medicine, Amsterdam Infection & Immunity Institute, Meibergdreef 9, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1093/jac/dky471DOI Listing
March 2019

Biotechnology of health-promoting bacteria.

Biotechnol Adv 2019 Mar 12. Epub 2019 Mar 12.

Human Microbiome Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.biotechadv.2019.03.008DOI Listing
March 2019

Dynamics of the Gut Microbiota in Children Receiving Selective or Total Gut Decontamination Treatment during Hematopoietic Stem Cell Transplantation.

Biol Blood Marrow Transplant 2019 Feb 5. Epub 2019 Feb 5.

Department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands; Center for Microbiome Analyses and Therapeutics, Leiden University Medical Center, Leiden, the Netherlands.

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http://dx.doi.org/10.1016/j.bbmt.2019.01.037DOI Listing
February 2019

Bowel Biofilms: Tipping Points between a Healthy and Compromised Gut?

Trends Microbiol 2019 Jan 12;27(1):17-25. Epub 2018 Sep 12.

Laboratory of Microbiology, Wageningen University, 6708 WE Wageningen, The Netherlands; Faculty of Medicine, Immunobiology Research Program, Department of Bacteriology and Immunology, University of Helsinki, 00290 Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.tim.2018.08.009DOI Listing
January 2019

A Bifidobacterial pilus-associated protein promotes colonic epithelial proliferation.

Mol Microbiol 2019 01 2;111(1):287-301. Epub 2018 Dec 2.

APC Microbiome Ireland, National University of Ireland, Western Road, Cork, Ireland.

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http://dx.doi.org/10.1111/mmi.14155DOI Listing
January 2019

The Effect of Psyllium Husk on Intestinal Microbiota in Constipated Patients and Healthy Controls.

Int J Mol Sci 2019 Jan 20;20(2). Epub 2019 Jan 20.

Nottingham Digestive Diseases Centre and NIHR Nottingham Biomedical Research Centre at Nottingham University Hospitals NHS Trust, the University of Nottingham, Notts NG7 2UH, UK.

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http://dx.doi.org/10.3390/ijms20020433DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358997PMC
January 2019

Intestinal epithelial N-acylphosphatidylethanolamine phospholipase D links dietary fat to metabolic adaptations in obesity and steatosis.

Nat Commun 2019 01 28;10(1):457. Epub 2019 Jan 28.

Metabolism and Nutrition Research Group, Louvain Drug Research Institute, Walloon Excellence in Life sciences and BIOtechnology (WELBIO), UCLouvain, Université catholique de Louvain, Av. E. Mounier, 73 B1.73.11, 1200, Bruxelles, Belgium.

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http://dx.doi.org/10.1038/s41467-018-08051-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349942PMC
January 2019

Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces.

Int J Syst Evol Microbiol 2018 Dec 23;68(12):3741-3746. Epub 2018 Oct 23.

1​Laboratory of Microbiology, Wageningen University and Research, Stippeneng 4, Building 124, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1099/ijsem.0.003041DOI Listing
December 2018

Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent.

Int J Syst Evol Microbiol 2018 Nov 18;68(11):3479-3486. Epub 2018 Sep 18.

1​Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1099/ijsem.0.003012DOI Listing
November 2018

Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism.

Int J Syst Evol Microbiol 2018 Oct 4. Epub 2018 Oct 4.

3​RPU Immunobiology, Department of Bacteriology and Immunology, Faculty of Medicine, University of Helsinki, 00014 Helsinki, Finland.

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http://www.microbiologyresearch.org/content/journal/ijsem/10
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http://dx.doi.org/10.1099/ijsem.0.003028DOI Listing
October 2018

Fucosylated oligosaccharides in mother's milk alleviate the effects of caesarean birth on infant gut microbiota.

Sci Rep 2018 Sep 13;8(1):13757. Epub 2018 Sep 13.

Immunobiology Research Programme, Department of Bacteriology and Immunology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1038/s41598-018-32037-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137148PMC
September 2018

induces gut microbiota remodelling and controls islet autoimmunity in NOD mice.

Gut 2018 08 21;67(8):1445-1453. Epub 2017 Dec 21.

Laboratory of Microbiology, Wagenigen University, Wageningen, The Netherlands.

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http://dx.doi.org/10.1136/gutjnl-2017-314508DOI Listing
August 2018

Early life colonization of the human gut: microbes matter everywhere.

Curr Opin Microbiol 2018 08 4;44:70-78. Epub 2018 Aug 4.

Immunobiology Research Programme, Department of Bacteriology and Immunology, University of Helsinki, Helsinki, Finland; Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.

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http://dx.doi.org/10.1016/j.mib.2018.06.003DOI Listing
August 2018

in the Human Gastrointestinal Tract: When, Where, and How?

Microorganisms 2018 Jul 23;6(3). Epub 2018 Jul 23.

Laboratory of Microbiology, Wageningen University and Research, Stippeneng 4, 6708WE Wageningen, The Netherlands.

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http://dx.doi.org/10.3390/microorganisms6030075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6163243PMC
July 2018

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut.

Front Physiol 2018 10;9:888. Epub 2018 Jul 10.

Laboratory of Microbiology, Wageningen University and Research, Wageningen, Netherlands.

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http://dx.doi.org/10.3389/fphys.2018.00888DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048469PMC
July 2018

Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation.

Microb Biotechnol 2018 05 26;11(3):476-485. Epub 2018 Jan 26.

Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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http://dx.doi.org/10.1111/1751-7915.13033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5902328PMC
May 2018

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia.

Transl Psychiatry 2018 05 10;8(1):96. Epub 2018 May 10.

Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, University California Los Angeles, Los Angeles, CA, USA.

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http://dx.doi.org/10.1038/s41398-018-0107-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943399PMC
May 2018

Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3.

PLoS One 2018 16;13(2):e0192452. Epub 2018 Feb 16.

Research Program Unit Immunobiology, Medicum, University of Helsinki, Helsinki, Finland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0192452PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5815585PMC
April 2018

Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling.

J Microbiol Methods 2018 04 18;147:76-86. Epub 2018 Mar 18.

Folkhälsan Research Center, Helsinki, Finland; Faculty of Medicine, University of Helsinki, Helsinki, Finland; Department of Research, Cancer Registry of Norway, Oslo, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.mimet.2018.03.003DOI Listing
April 2018

Selected aspects of the human gut microbiota.

Cell Mol Life Sci 2018 01 6;75(1):81-82. Epub 2017 Oct 6.

School of Microbiology, APC Microbiome Institute, University College Cork, Cork, Ireland.

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http://dx.doi.org/10.1007/s00018-017-2669-8DOI Listing
January 2018

Mouse models for human intestinal microbiota research: a critical evaluation.

Cell Mol Life Sci 2018 01 9;75(1):149-160. Epub 2017 Nov 9.

Laboratory of Microbiology, Wageningen University, Stippeneng 4, Building 124, 6708 WE, Wageningen, The Netherlands.

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http://dx.doi.org/10.1007/s00018-017-2693-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5752736PMC
January 2018

Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows.

Biotechnol Biofuels 2018 25;11:13. Epub 2018 Jan 25.

1Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1186/s13068-018-1012-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784674PMC
January 2018

Encapsulation of the therapeutic microbe Akkermansia muciniphila in a double emulsion enhances survival in simulated gastric conditions.

Food Res Int 2017 12 9;102:372-379. Epub 2017 Sep 9.

Laboratory of Food Process Engineering, Wageningen University and Research, Bornse Weilanden 9, Wageningen, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.foodres.2017.09.004DOI Listing
December 2017

Action and function of Akkermansia muciniphila in microbiome ecology, health and disease.

Best Pract Res Clin Gastroenterol 2017 Dec 13;31(6):637-642. Epub 2017 Oct 13.

Wageningen University and Research, Stippeneng 4, 6708WE Wageningen, The Netherlands. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15216918173011
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http://dx.doi.org/10.1016/j.bpg.2017.10.001DOI Listing
December 2017

Bacteriological and Immunological Profiling of Meconium and Fecal Samples from Preterm Infants: A Two-Year Follow-Up Study.

Nutrients 2017 Nov 27;9(12). Epub 2017 Nov 27.

Departamento de Nutrición, Bromatología y Tecnología de los Alimentos, Universidad Complutense de Madrid, 28040 Madrid, Spain.

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http://dx.doi.org/10.3390/nu9121293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5748744PMC
November 2017

Variation of mucin adhesion, cell surface characteristics, and molecular mechanisms among Lactobacillus plantarum isolated from different habitats.

Appl Microbiol Biotechnol 2017 Oct 11;101(20):7663-7674. Epub 2017 Sep 11.

Department of Industrial Biotechnology, Faculty of Agro-Industry, Prince of Songkla University, 15 Kanchanavanich Rd., Hat Yai, Songkhla, 90110, Thailand.

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http://dx.doi.org/10.1007/s00253-017-8482-3DOI Listing
October 2017

Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition.

Cell Metab 2017 Oct;26(4):611-619.e6

Department of Vascular Medicine, Academic Medical Center, University of Amsterdam, 1105 AZ Amsterdam, the Netherlands; Top Institute of Food and Nutrition, 6700 AN Wageningen, the Netherlands; Department of Internal Medicine, VUMC, Free University, Amsterdam, the Netherlands; Wallenberg Laboratory, Sahlgrenska Hospital, University of Gothenburg, Gothenburg, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2017.09.008DOI Listing
October 2017

Anti-Infective Effect of Adhesive Probiotic Lactobacillus in Fish is Correlated With Their Spatial Distribution in the Intestinal Tissue.

Sci Rep 2017 10 16;7(1):13195. Epub 2017 Oct 16.

Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China.

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http://dx.doi.org/10.1038/s41598-017-13466-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5643340PMC
October 2017

Complete Genome Sequence of Strain L2-7.

Genome Announc 2017 Oct 26;5(43). Epub 2017 Oct 26.

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands

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http://dx.doi.org/10.1128/genomeA.01167-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658497PMC
October 2017

Antibiotic-induced gut microbiota disruption during human endotoxemia: a randomised controlled study.

Gut 2017 09 15;66(9):1623-1630. Epub 2016 Jun 15.

Center for Experimental and Molecular Medicine, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1136/gutjnl-2016-312132DOI Listing
September 2017

Next-Generation Beneficial Microbes: The Case of .

Front Microbiol 2017 22;8:1765. Epub 2017 Sep 22.

Laboratory of Microbiology, Wageningen UniversityWageningen, Netherlands.

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http://dx.doi.org/10.3389/fmicb.2017.01765DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614963PMC
September 2017

Feasibility of Metatranscriptome Analysis from Infant Gut Microbiota: Adaptation to Solid Foods Results in Increased Activity of Firmicutes at Six Months.

Int J Microbiol 2017 24;2017:9547063. Epub 2017 Aug 24.

Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, Netherlands.

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http://dx.doi.org/10.1155/2017/9547063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5587937PMC
August 2017

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy.

PLoS One 2016 23;11(6):e0157851. Epub 2016 Jun 23.

Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0157851PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919048PMC
July 2017

More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes.

Microbiome 2017 07 14;5(1):78. Epub 2017 Jul 14.

Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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http://dx.doi.org/10.1186/s40168-017-0299-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512848PMC
July 2017

Streptococcus caviae sp. nov., isolated from guinea pig faecal samples.

Int J Syst Evol Microbiol 2017 May 25;67(5):1551-1556. Epub 2017 May 25.

1​Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.

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http://dx.doi.org/10.1099/ijsem.0.001758DOI Listing
May 2017

Draft Genome Sequences of the Aerobic Strains AL3 and AL5.

Genome Announc 2017 May 4;5(18). Epub 2017 May 4.

Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy

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http://dx.doi.org/10.1128/genomeA.00213-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5442371PMC
May 2017

Microbe Profile: Akkermansia muciniphila: a conserved intestinal symbiont that acts as the gatekeeper of our mucosa.

Authors:
Willem M de Vos

Microbiology 2017 05 22;163(5):646-648. Epub 2017 May 22.

1​Laboratory of Microbiology, Wageningen University, The Netherlands.

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http://dx.doi.org/10.1099/mic.0.000444DOI Listing
May 2017

Lactobacillus rhamnosus GG Intake Modifies Preschool Children's Intestinal Microbiota, Alleviates Penicillin-Associated Changes, and Reduces Antibiotic Use.

PLoS One 2016 25;11(4):e0154012. Epub 2016 Apr 25.

Department of Bacteriology and Immunology, Immunobiology Research Programme, Faculty of Medicine, University of Helsinki, Helsinki, Finland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0154012PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4844131PMC
March 2017

Faecal and Serum Metabolomics in Paediatric Inflammatory Bowel Disease.

J Crohns Colitis 2017 Mar;11(3):321-334

Metabolomics Unit, Institute for Molecular Medicine Finland FIMM, University of Helsinki, Helsinki, FIN-00029, Finland.

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http://dx.doi.org/10.1093/ecco-jcc/jjw158DOI Listing
March 2017

Homeostasis of the gut barrier and potential biomarkers.

Am J Physiol Gastrointest Liver Physiol 2017 Mar 1;312(3):G171-G193. Epub 2016 Dec 1.

Institute of Nutritional Science, Nestlé Research Center, Lausanne, Switzerland; and.

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http://dx.doi.org/10.1152/ajpgi.00048.2015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440615PMC
March 2017

Microbiome yarns: microbiomology of curly and straight hair.

Microb Biotechnol 2017 03;10(2):231-237

MSc Health Policy Student, Department of Surgery and Cancer, Imperial College, London, UK.

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http://dx.doi.org/10.1111/1751-7915.12694DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5328807PMC
March 2017

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies.

FEMS Microbiol Rev 2017 03;41(2):182-199

Laboratory of Microbiology, Wageningen University, Stippeneng 4, Building 124, 6708 WE Wageningen, the Netherlands.

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http://dx.doi.org/10.1093/femsre/fuw045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5399919PMC
March 2017

Enrichment of sulfidogenic bacteria from the human intestinal tract.

FEMS Microbiol Lett 2017 02;364(4)

Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1093/femsle/fnx028DOI Listing
February 2017

Critically ill patients demonstrate large interpersonal variation in intestinal microbiota dysregulation: a pilot study.

Intensive Care Med 2017 Jan 11;43(1):59-68. Epub 2016 Nov 11.

Center for Experimental and Molecular Medicine, Academic Medical Center, University of Amsterdam, Meibergdreef 9, Room G2-130, 1105 AZ, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1007/s00134-016-4613-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5203863PMC
January 2017

Adaptation of Akkermansia muciniphila to the Oxic-Anoxic Interface of the Mucus Layer.

Appl Environ Microbiol 2016 Dec 23;82(23):6983-6993. Epub 2016 Sep 23.

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands

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http://dx.doi.org/10.1128/AEM.01641-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5103097PMC
December 2016

Comparative genomics and physiology of the butyrate-producing bacterium Intestinimonas butyriciproducens.

Environ Microbiol Rep 2016 12 9;8(6):1024-1037. Epub 2016 Nov 9.

Laboratory of Microbiology, Wageningen University, Stippeneng 4, Wageningen, WE, 6708, The Netherlands.

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http://dx.doi.org/10.1111/1758-2229.12483DOI Listing
December 2016

Akkermansia glycaniphila sp. nov., an anaerobic mucin-degrading bacterium isolated from reticulated python faeces.

Int J Syst Evol Microbiol 2016 Nov 5;66(11):4614-4620. Epub 2016 Aug 5.

1​Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands 3​Department of Bacteriology and Immunology and Research Programs Unit Immunology, University of Helsinki, Helsinki, Finland 2​Department of Veterinary Biosciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1099/ijsem.0.001399DOI Listing
November 2016

Harnessing the power of microbial autotrophy.

Nat Rev Microbiol 2016 11 26;14(11):692-706. Epub 2016 Sep 26.

Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

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http://dx.doi.org/10.1038/nrmicro.2016.130DOI Listing
November 2016

Sugar Coating the Envelope: Glycoconjugates for Microbe-Host Crosstalk.

Trends Microbiol 2016 11 30;24(11):853-861. Epub 2016 Jun 30.

Laboratory of Microbiology, Wageningen University, 6708 WE Wageningen, The Netherlands; Faculty of Medicine, Immunobiology Research Program, Department of Bacteriology and Immunology, University of Helsinki, 00290 Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.tim.2016.06.004DOI Listing
November 2016

Lactobacillus rhamnosus GG Outcompetes Enterococcus faecium via Mucus-Binding Pili: Evidence for a Novel and Heterospecific Probiotic Mechanism.

Appl Environ Microbiol 2016 10 16;82(19):5756-62. Epub 2016 Sep 16.

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands Department of Veterinary Biosciences, University of Helsinki, Helsinki, Finland RPU Immunobiology, Department of Bacteriology and Immunology, Haartman Institute, University of Helsinki, Helsinki, Finland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5038030PMC
http://dx.doi.org/10.1128/AEM.01243-16DOI Listing
October 2016

Long-term effects on luminal and mucosal microbiota and commonly acquired taxa in faecal microbiota transplantation for recurrent Clostridium difficile infection.

BMC Med 2016 Oct 11;14(1):155. Epub 2016 Oct 11.

Immunobiology Research Program and Department of Bacteriology and Immunology, Faculty of Medicine, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1186/s12916-016-0698-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5057499PMC
October 2016

Isolation of a genetically accessible thermophilic xylan degrading bacterium from compost.

Biotechnol Biofuels 2016 6;9:210. Epub 2016 Oct 6.

Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE Wageningen, The Netherlands ; Corbion, Arkselsedijk 46, 4206 AC Gorinchem, The Netherlands.

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http://dx.doi.org/10.1186/s13068-016-0618-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5053077PMC
October 2016

Healthy human gut phageome.

Proc Natl Acad Sci U S A 2016 09 29;113(37):10400-5. Epub 2016 Aug 29.

Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717

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http://dx.doi.org/10.1073/pnas.1601060113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027468PMC
September 2016

Causality of small and large intestinal microbiota in weight regulation and insulin resistance.

Mol Metab 2016 Sep 10;5(9):759-70. Epub 2016 Jun 10.

Diabetes Center, Department of Internal Medicine, VU University Medical Center, Amsterdam, The Netherlands; Institute for Cardiovascular Research (ICaR), VU University Medical Center, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.molmet.2016.06.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5004227PMC
September 2016

How to Manipulate the Microbiota: Fecal Microbiota Transplantation.

Adv Exp Med Biol 2016 ;902:143-53

Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703, Wageningen, The Netherlands.

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http://dx.doi.org/10.1007/978-3-319-31248-4_10DOI Listing
August 2016

Association of Early-Life Antibiotic Use and Protective Effects of Breastfeeding: Role of the Intestinal Microbiota.

JAMA Pediatr 2016 08;170(8):750-7

Immunobiology Research Programme, Department of Bacteriology and Immunology, University of Helsinki, Helsinki, Finland4Laboratory of Microbiology, Wageningen University, Wageningen, the Netherlands.

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http://dx.doi.org/10.1001/jamapediatrics.2016.0585DOI Listing
August 2016

Antibiotic-Induced Gut Microbiota Disruption Decreases TNF-α Release by Mononuclear Cells in Healthy Adults.

Clin Transl Gastroenterol 2016 Aug 4;7(8):e186. Epub 2016 Aug 4.

Center for Experimental and Molecular Medicine, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1038/ctg.2016.43DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543405PMC
August 2016

Characterization of Outer Membrane Proteome of Akkermansia muciniphila Reveals Sets of Novel Proteins Exposed to the Human Intestine.

Front Microbiol 2016 26;7:1157. Epub 2016 Jul 26.

Laboratory of Microbiology, Wageningen UniversityWageningen, Netherlands; Department of Veterinary Biosciences, University of HelsinkiHelsinki, Finland; Immunobiology, Department of Bacteriology and Immunology, and Research Programs Unit, University of HelsinkiHelsinki, Finland.

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http://dx.doi.org/10.3389/fmicb.2016.01157DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4960237PMC
August 2016

Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216(T).

Stand Genomic Sci 2016 24;11(1):52. Epub 2016 Aug 24.

Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands ; Corbion, Arkelsedijk 46, 4206 AC Gorinchem, The Netherlands.

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http://dx.doi.org/10.1186/s40793-016-0172-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995803PMC
August 2016

Polymorphisms, Chromosomal Rearrangements, and Mutator Phenotype Development during Experimental Evolution of Lactobacillus rhamnosus GG.

Appl Environ Microbiol 2016 07 13;82(13):3783-92. Epub 2016 Jun 13.

Department of Veterinary Biosciences, University of Helsinki, Helsinki, Finland Laboratory of Microbiology, Wageningen University, Wageningen, the Netherlands RPU Immunobiology, Department of Bacteriology and Immunology, Haartman Institute, University of Helsinki, Helsinki, Finland

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http://dx.doi.org/10.1128/AEM.00255-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907198PMC
July 2016

Lactobacillus plantarum WCFS1 and its host interaction: a dozen years after the genome.

Microb Biotechnol 2016 07 27;9(4):452-65. Epub 2016 May 27.

Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands.

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http://dx.doi.org/10.1111/1751-7915.12368DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919987PMC
July 2016

The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires.

Genome Biol Evol 2016 07 2;8(6):1889-905. Epub 2016 Jul 2.

Host-Microbe Interactomics Group, Department of Animal Sciences, Wageningen University and Research Centre, Wageningen, the Netherlands.

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http://dx.doi.org/10.1093/gbe/evw123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943194PMC
July 2016

Antibiotic use in childhood alters the gut microbiota and predisposes to overweight.

Microb Cell 2016 Jun 20;3(7):296-298. Epub 2016 Jun 20.

Department of Bacteriology and Immunology, Immunobiology Research Program, University of Helsinki, Finland.

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http://dx.doi.org/10.15698/mic2016.07.514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354595PMC
June 2016

Durable coexistence of donor and recipient strains after fecal microbiota transplantation.

Science 2016 Apr;352(6285):586-9

Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany. Molecular Medicine Partnership Unit, University of Heidelberg and European Molecular Biology Laboratory, 69120 Heidelberg, Germany. Max Delbrück Centre for Molecular Medicine, 13125 Berlin, Germany. Department of Bioinformatics, Biocenter, University of Würzburg, 97074 Würzburg, Germany.

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http://dx.doi.org/10.1126/science.aad8852DOI Listing
April 2016