Wesley Warren

Wesley Warren

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Wesley Warren

Publications by authors named "Wesley Warren"

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Human-specific tandem repeat expansion and differential gene expression during primate evolution.

Proc Natl Acad Sci U S A 2019 Nov 28;116(46):23243-23253. Epub 2019 Oct 28.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195;

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http://dx.doi.org/10.1073/pnas.1912175116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859368PMC
November 2019

Expression Signatures of Cisplatin- and Trametinib-Treated Early-Stage Medaka Melanomas.

G3 (Bethesda) 2019 07 9;9(7):2267-2276. Epub 2019 Jul 9.

Physiological Chemistry, Biocenter, University of Wuerzburg, 97074 Wuerzburg, Germany

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http://dx.doi.org/10.1534/g3.119.400051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643878PMC
July 2019

Characterizing the Major Structural Variant Alleles of the Human Genome.

Cell 2019 01 17;176(3):663-675.e19. Epub 2019 Jan 17.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183163
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http://dx.doi.org/10.1016/j.cell.2018.12.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6438697PMC
January 2019

Application of the Transcriptional Disease Signature (TDSs) to Screen Melanoma-Effective Compounds in a Small Fish Model.

Sci Rep 2019 Jan 24;9(1):530. Epub 2019 Jan 24.

Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, 419 Centennial Hall, Texas State University, San Marcos, TX, USA.

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http://dx.doi.org/10.1038/s41598-018-36656-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345854PMC
January 2019

Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model.

PLoS Genet 2018 12 26;14(12):e1007875. Epub 2018 Dec 26.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, San Marcos, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324826PMC
December 2018

Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions.

Pigment Cell Melanoma Res 2018 07 29;31(4):496-508. Epub 2018 Jan 29.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX, USA.

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http://dx.doi.org/10.1111/pcmr.12686DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013346PMC
July 2018

Expression signatures of early-stage and advanced medaka melanomas.

Comp Biochem Physiol C Toxicol Pharmacol 2018 Jun 21;208:20-28. Epub 2017 Nov 21.

Physiological Chemistry, Biocenter, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany; Comprehensive Cancer Center Mainfranken, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany; Hagler Institute for Advanced Study and Department of Biology, Texas A&M University, College Station, TX 77843, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cbpc.2017.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5936653PMC
June 2018

The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development.

BMC Genomics 2018 02 20;19(1):155. Epub 2018 Feb 20.

Department of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.

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http://dx.doi.org/10.1186/s12864-018-4539-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819677PMC
February 2018

The Genome and Adult Somatic Transcriptome of the Mormyrid Electric Fish Paramormyrops kingsleyae.

Genome Biol Evol 2017 12;9(12):3525-3530

McDonnell Genome Institute, Washington University, St Louis.

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http://dx.doi.org/10.1093/gbe/evx265DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751062PMC
December 2017

Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge.

Parasit Vectors 2017 Dec 19;10(1):614. Epub 2017 Dec 19.

Department of Biochemistry, Biotechnology Research Institute, Kenya Agricultural and Livestock Research Organization, P.O. Box 362, Kikuyu, Kenya.

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http://dx.doi.org/10.1186/s13071-017-2569-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738168PMC
December 2017

PGD: a pangolin genome hub for the research community.

Database (Oxford) 2016 11;2016. Epub 2016 Sep 11.

Genome Informatics Research Laboratory, Centre for Research in Biotechnology for Agriculture (CEBAR), High Impact Research Building, University of Malaya, 50603 Kuala Lumpur, Malaysia Department of Oral and Craniofacial Sciences, Faculty of Dentistry, University of Malaya, 50603 Kuala Lumpur, Malaysia Genome Solutions Sdn Bhd, Suite 8, Innovation Incubator UM, Level 5, Research Management & Innovation Complex, University of Malaya, 50603 Kuala Lumpur, Malaysia

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http://dx.doi.org/10.1093/database/baw063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018392PMC
November 2017

Gene Expression in Is Regulated Predominantly by Gene Dosage.

mBio 2017 09 12;8(5). Epub 2017 Sep 12.

Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA

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http://dx.doi.org/10.1128/mBio.01393-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596349PMC
September 2017

Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids.

Mol Carcinog 2017 08 13;56(8):1935-1944. Epub 2017 Apr 13.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, San Marcos, Texas.

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http://dx.doi.org/10.1002/mc.22651DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5767473PMC
August 2017

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon Di Stefano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer Ty Anna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 08 23;8:16153. Epub 2017 Aug 23.

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http://dx.doi.org/10.1038/ncomms16153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5569240PMC
August 2017

The practical use of genome sequencing data in the management of a feline colony pedigree.

BMC Vet Res 2017 Jul 27;13(1):225. Epub 2017 Jul 27.

McDonnell Genome Institute, Washington University School of Medicine, Saint Louis, MO, 63108, USA.

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http://bmcvetres.biomedcentral.com/articles/10.1186/s12917-0
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http://dx.doi.org/10.1186/s12917-017-1144-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5532773PMC
July 2017

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon di Stephano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer TyAnna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 05 16;8:15451. Epub 2017 May 16.

The McDonnell Genome Institute, Washington University, Saint Louis, Missouri 63108 USA.

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http://dx.doi.org/10.1038/ncomms15451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440852PMC
May 2017

The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species.

BMC Genomics 2017 May 30;18(1):424. Epub 2017 May 30.

Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14850, USA.

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http://dx.doi.org/10.1186/s12864-017-3810-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450241PMC
May 2017

A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine.

Sci Rep 2016 10 3;6:34494. Epub 2016 Oct 3.

Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, FL, 33149, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5046086PMC
http://dx.doi.org/10.1038/srep34494DOI Listing
October 2016

Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates.

Sci Adv 2016 08 10;2(8):e1600633. Epub 2016 Aug 10.

Department of Veterinary Integrative Biosciences, Interdisciplinary Program in Genetics, Texas A&M University, College Station, TX 77843, USA.

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http://dx.doi.org/10.1126/sciadv.1600633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980104PMC
August 2016

Whole Body Melanoma Transcriptome Response in Medaka.

PLoS One 2015 29;10(12):e0143057. Epub 2015 Dec 29.

McDonnell Genome Institute at Washington University, 4444 Forest Park Blvd., St Louis, MO, 63108, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143057PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4699850PMC
July 2016

Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models.

BMC Genomics 2016 05 17;17:357. Epub 2016 May 17.

Physiological Chemistry I, Biocenter, University of Würzburg, Am Hubland, 97074, Würzburg, Germany.

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http://dx.doi.org/10.1186/s12864-016-2697-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4869193PMC
May 2016

INTEGRATE: gene fusion discovery using whole genome and transcriptome data.

Genome Res 2016 Jan 10;26(1):108-18. Epub 2015 Nov 10.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63110, USA; Department of Internal Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, Missouri 63110, USA; Alvin J. Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri 63110, USA; Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, Missouri 63110, USA.

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http://dx.doi.org/10.1101/gr.186114.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691743PMC
January 2016

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

BMC Genomics 2016 Jan 7;17:37. Epub 2016 Jan 7.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, 419 Centennial Hall, 601 University Drive, San Marcos, TX, 78666, USA.

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http://dx.doi.org/10.1186/s12864-015-2361-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705583PMC
January 2016

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection.

Authors:
Rafael D Mesquita Raquel J Vionette-Amaral Carl Lowenberger Rolando Rivera-Pomar Fernando A Monteiro Patrick Minx John Spieth A Bernardo Carvalho Francisco Panzera Daniel Lawson André Q Torres Jose M C Ribeiro Marcos H F Sorgine Robert M Waterhouse Michael J Montague Fernando Abad-Franch Michele Alves-Bezerra Laurence R Amaral Helena M Araujo Ricardo N Araujo L Aravind Georgia C Atella Patricia Azambuja Mateus Berni Paula R Bittencourt-Cunha Gloria R C Braz Gustavo Calderón-Fernández Claudia M A Carareto Mikkel B Christensen Igor R Costa Samara G Costa Marilvia Dansa Carlos R O Daumas-Filho Iron F De-Paula Felipe A Dias George Dimopoulos Scott J Emrich Natalia Esponda-Behrens Patricia Fampa Rita D Fernandez-Medina Rodrigo N da Fonseca Marcio Fontenele Catrina Fronick Lucinda A Fulton Ana Caroline Gandara Eloi S Garcia Fernando A Genta Gloria I Giraldo-Calderón Bruno Gomes Katia C Gondim Adriana Granzotto Alessandra A Guarneri Roderic Guigó Myriam Harry Daniel S T Hughes Willy Jablonka Emmanuelle Jacquin-Joly M Patricia Juárez Leonardo B Koerich Angela B Lange José Manuel Latorre-Estivalis Andrés Lavore Gena G Lawrence Cristiano Lazoski Claudio R Lazzari Raphael R Lopes Marcelo G Lorenzo Magda D Lugon David Majerowicz Paula L Marcet Marco Mariotti Hatisaburo Masuda Karine Megy Ana C A Melo Fanis Missirlis Theo Mota Fernando G Noriega Marcela Nouzova Rodrigo D Nunes Raquel L L Oliveira Gilbert Oliveira-Silveira Sheila Ons Ian Orchard Lucia Pagola Gabriela O Paiva-Silva Agustina Pascual Marcio G Pavan Nicolás Pedrini Alexandre A Peixoto Marcos H Pereira Andrew Pike Carla Polycarpo Francisco Prosdocimi Rodrigo Ribeiro-Rodrigues Hugh M Robertson Ana Paula Salerno Didier Salmon Didac Santesmasses Renata Schama Eloy S Seabra-Junior Livia Silva-Cardoso Mario A C Silva-Neto Matheus Souza-Gomes Marcos Sterkel Mabel L Taracena Marta Tojo Zhijian Jake Tu Jose M C Tubio Raul Ursic-Bedoya Thiago M Venancio Ana Beatriz Walter-Nuno Derek Wilson Wesley C Warren Richard K Wilson Erwin Huebner Ellen M Dotson Pedro L Oliveira

Proc Natl Acad Sci U S A 2015 Dec 16;112(48):14936-41. Epub 2015 Nov 16.

Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular, Rio de Janeiro 21941-591, Brazil; Programa de Biologia Molecular e Biotecnologia, Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-591, Brazil;

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http://dx.doi.org/10.1073/pnas.1506226112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4672799PMC
December 2015

Identification and analysis of divergent immune gene families within the Tasmanian devil genome.

BMC Genomics 2015 Nov 26;16:1017. Epub 2015 Nov 26.

Faculty of Veterinary Science, University of Sydney, Camperdown, NSW, Australia.

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http://dx.doi.org/10.1186/s12864-015-2206-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662006PMC
November 2015

Third Report on Chicken Genes and Chromosomes 2015.

Authors:
Michael Schmid Jacqueline Smith David W Burt Bronwen L Aken Parker B Antin Alan L Archibald Chris Ashwell Perry J Blackshear Clarissa Boschiero C Titus Brown Shane C Burgess Hans H Cheng William Chow Derrick J Coble Amanda Cooksey Richard P M A Crooijmans Joana Damas Richard V N Davis Dirk-Jan de Koning Mary E Delany Thomas Derrien Takele T Desta Ian C Dunn Matthew Dunn Hans Ellegren Lél Eöry Ionas Erb Marta Farré Mario Fasold Damarius Fleming Paul Flicek Katie E Fowler Laure Frésard David P Froman Valerie Garceau Paul P Gardner Almas A Gheyas Darren K Griffin Martien A M Groenen Thomas Haaf Olivier Hanotte Alan Hart Julien Häsler S Blair Hedges Jana Hertel Kerstin Howe Allen Hubbard David A Hume Pete Kaiser Darek Kedra Stephen J Kemp Christophe Klopp Kalmia E Kniel Richard Kuo Sandrine Lagarrigue Susan J Lamont Denis M Larkin Raman A Lawal Sarah M Markland Fiona McCarthy Heather A McCormack Marla C McPherson Akira Motegi Stefan A Muljo Andrea Münsterberg Rishi Nag Indrajit Nanda Michael Neuberger Anne Nitsche Cedric Notredame Harry Noyes Rebecca O'Connor Elizabeth A O'Hare Andrew J Oler Sheila C Ommeh Helio Pais Michael Persia Frédérique Pitel Likit Preeyanon Pablo Prieto Barja Elizabeth M Pritchett Douglas D Rhoads Charmaine M Robinson Michael N Romanov Max Rothschild Pierre-François Roux Carl J Schmidt Alisa-Sophia Schneider Matthew G Schwartz Steve M Searle Michael A Skinner Craig A Smith Peter F Stadler Tammy E Steeves Claus Steinlein Liang Sun Minoru Takata Igor Ulitsky Qing Wang Ying Wang Wesley C Warren Jonathan M D Wood David Wragg Huaijun Zhou

Cytogenet Genome Res 2015 14;145(2):78-179. Epub 2015 Jul 14.

Department of Human Genetics, University of Würzburg, Würzburg, Germany.

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http://dx.doi.org/10.1159/000430927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120589PMC
October 2015

Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica.

Fish Shellfish Immunol 2015 Sep 14;46(1):2-4. Epub 2015 May 14.

USDA Agricultural Research Service, National Cold Water Marine Aquaculture Center, 469 CBLS, Kingston, RI 02881, USA. Electronic address:

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http://dx.doi.org/10.1016/j.fsi.2015.05.004DOI Listing
September 2015

Response to Hron et al.

Genome Biol 2015 Aug 18;16:165. Epub 2015 Aug 18.

Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USA.

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http://dx.doi.org/10.1186/s13059-015-0725-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539853PMC
August 2015

Extensive error in the number of genes inferred from draft genome assemblies.

PLoS Comput Biol 2014 Dec 4;10(12):e1003998. Epub 2014 Dec 4.

School of Informatics and Computing, Indiana University, Bloomington, Indiana; Department of Biology, Indiana University, Bloomington, Indiana.

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http://dx.doi.org/10.1371/journal.pcbi.1003998DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256071PMC
December 2014

Comparative genomics reveals insights into avian genome evolution and adaptation.

Science 2014 Dec 11;346(6215):1311-20. Epub 2014 Dec 11.

China National GeneBank, Beijing Genomics Institute (BGI)-Shenzhen, Shenzhen, 518083, China. Macau University of Science and Technology, Avenida Wai long, Taipa, Macau 999078, China. Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia. Department of Medicine, University of Hong Kong, Hong Kong.

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http://jarvislab.net/wp-content/uploads/2014/12/Science-2014
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http://www.sciencemag.org/cgi/doi/10.1126/science.1251385
Publisher Site
http://dx.doi.org/10.1126/science.1251385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390078PMC
December 2014

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Authors:
Erich D Jarvis Siavash Mirarab Andre J Aberer Bo Li Peter Houde Cai Li Simon Y W Ho Brant C Faircloth Benoit Nabholz Jason T Howard Alexander Suh Claudia C Weber Rute R da Fonseca Jianwen Li Fang Zhang Hui Li Long Zhou Nitish Narula Liang Liu Ganesh Ganapathy Bastien Boussau Md Shamsuzzoha Bayzid Volodymyr Zavidovych Sankar Subramanian Toni Gabaldón Salvador Capella-Gutiérrez Jaime Huerta-Cepas Bhanu Rekepalli Kasper Munch Mikkel Schierup Bent Lindow Wesley C Warren David Ray Richard E Green Michael W Bruford Xiangjiang Zhan Andrew Dixon Shengbin Li Ning Li Yinhua Huang Elizabeth P Derryberry Mads Frost Bertelsen Frederick H Sheldon Robb T Brumfield Claudio V Mello Peter V Lovell Morgan Wirthlin Maria Paula Cruz Schneider Francisco Prosdocimi José Alfredo Samaniego Amhed Missael Vargas Velazquez Alonzo Alfaro-Núñez Paula F Campos Bent Petersen Thomas Sicheritz-Ponten An Pas Tom Bailey Paul Scofield Michael Bunce David M Lambert Qi Zhou Polina Perelman Amy C Driskell Beth Shapiro Zijun Xiong Yongli Zeng Shiping Liu Zhenyu Li Binghang Liu Kui Wu Jin Xiao Xiong Yinqi Qiuemei Zheng Yong Zhang Huanming Yang Jian Wang Linnea Smeds Frank E Rheindt Michael Braun Jon Fjeldsa Ludovic Orlando F Keith Barker Knud Andreas Jønsson Warren Johnson Klaus-Peter Koepfli Stephen O'Brien David Haussler Oliver A Ryder Carsten Rahbek Eske Willerslev Gary R Graves Travis C Glenn John McCormack Dave Burt Hans Ellegren Per Alström Scott V Edwards Alexandros Stamatakis David P Mindell Joel Cracraft Edward L Braun Tandy Warnow Wang Jun M Thomas P Gilbert Guojie Zhang

Science 2014 Dec;346(6215):1320-31

China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1253451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405904PMC
December 2014

Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes.

Cell 2014 Nov 30;159(4):800-13. Epub 2014 Oct 30.

Whitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Whitehead Institute, Cambridge, MA 02142, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.09.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260969PMC
November 2014

Echidna venom gland transcriptome provides insights into the evolution of monotreme venom.

PLoS One 2013 12;8(11):e79092. Epub 2013 Nov 12.

Institute for Molecular Bioscience, University of Queensland, QLD, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0079092PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827146PMC
September 2014

Gibbon genome and the fast karyotype evolution of small apes.

Nature 2014 Sep;513(7517):195-201

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature13679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249732PMC
September 2014

Venkatesh et al. reply.

Nature 2014 Jul;511(7508):E9-10

The Genome Institute at Washington University, St. Louis, Missouri 63108, USA.

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http://www.nature.com/articles/nature13447
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http://dx.doi.org/10.1038/nature13447DOI Listing
July 2014

On the origin of SCPP genes.

Evol Dev 2014 May 5;16(3):125-6. Epub 2014 May 5.

Comparative Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore, 138673, Singapore; Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 119228, Singapore.

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http://dx.doi.org/10.1111/ede.12072DOI Listing
May 2014

Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids.

Sci Rep 2013 ;3:1756

Institute of Experimental Pathology, University of Münster, 48149 Münster, Germany.

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http://dx.doi.org/10.1038/srep01756DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639448PMC
February 2014

Transcriptomic analysis of cultured whale skin cells exposed to hexavalent chromium [Cr(VI)].

Aquat Toxicol 2013 Jun 20;134-135:74-81. Epub 2013 Mar 20.

Molecular Biosciences Research Group, Department of Chemistry & Biochemistry, 419 Centennial Hall, Texas State University, 601 University Drive, San Marcos, TX 78666, USA.

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http://dx.doi.org/10.1016/j.aquatox.2013.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739694PMC
June 2013