Publications by authors named "Wendy Schackwitz"

55Publications

Genome sequence of the model rice variety KitaakeX.

Authors:
Rashmi Jain Jerry Jenkins Shengqiang Shu Mawsheng Chern Joel A Martin Dario Copetti Phat Q Duong Nikki T Pham David A Kudrna Jayson Talag Wendy S Schackwitz Anna M Lipzen David Dilworth Diane Bauer Jane Grimwood Catherine R Nelson Feng Xing Weibo Xie Kerrie W Barry Rod A Wing Jeremy Schmutz Guotian Li Pamela C Ronald

BMC Genomics 2019 Nov 27;20(1):905. Epub 2019 Nov 27.

Department of Plant Pathology and the Genome Center, University of California, One Shields Avenue, Davis, CA, 95616, USA.

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November 2019

Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants.

Authors:
Isidro Álvarez-Escribano Christoph Sasse Jin Woo Bok Hyunsoo Na Mojgan Amirebrahimi Anna Lipzen Wendy Schackwitz Joel Martin Kerrie Barry Gabriel Gutiérrez Sara Cea-Sánchez Ana T Marcos Igor V Grigoriev Nancy P Keller Gerhard H Braus David Cánovas

BMC Biol 2019 11 11;17(1):88. Epub 2019 Nov 11.

Department of Genetics, Faculty of Biology, University of Seville, Seville, Spain.

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November 2019

Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1.

Authors:
Liangrong Jiang Guotian Li Mawsheng Chern Rashmi Jain Nhan T Pham Joel A Martin Wendy S Schackwitz Juan Zhao Deling Ruan Rongyu Huang Jingsheng Zheng Pamela C Ronald

Rice (N Y) 2019 Jul 18;12(1):52. Epub 2019 Jul 18.

Department of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.

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July 2019

Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase.

Authors:
Jessy Labbé Wellington Muchero Olaf Czarnecki Juan Wang Xiaoping Wang Anthony C Bryan Kaijie Zheng Yongil Yang Meng Xie Jin Zhang Dongfang Wang Peter Meidl Hemeng Wang Jennifer L Morrell-Falvey Kevin R Cope Lucas G S Maia Jean-Michel Ané Ritesh Mewalal Sara S Jawdy Lee E Gunter Wendy Schackwitz Joel Martin François Le Tacon Ting Li Zhihao Zhang Priya Ranjan Erika Lindquist Xiaohan Yang Daniel A Jacobson Timothy J Tschaplinski Kerrie Barry Jeremy Schmutz Jin-Gui Chen Gerald A Tuskan

Nat Plants 2019 07 8;5(7):676-680. Epub 2019 Jul 8.

Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.

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July 2019

Experimental Evolution of Extreme Resistance to Ionizing Radiation in after 50 Cycles of Selection.

Authors:
Steven T Bruckbauer Joseph D Trimarco Joel Martin Brian Bushnell Katherine A Senn Wendy Schackwitz Anna Lipzen Matthew Blow Elizabeth A Wood Wesley S Culberson Christa Pennacchio Michael M Cox

J Bacteriol 2019 04 26;201(8). Epub 2019 Mar 26.

Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, USA

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April 2019

Corrigendum: Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria.

Authors:
Stephen M Techtmann Albert S Colman Michael B Murphy Wendy S Schackwitz Lynne A Goodwin Frank T Robb

Front Microbiol 2018 5;9:1016. Epub 2018 Jul 5.

Institute of Marine and Environmental Technology, University of Maryland, Baltimore, MD, United States.

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July 2018

Genomic Sequence Variation Analysis by Resequencing.

Authors:
Joel Martin Wendy Schackwitz Anna Lipzen

Methods Mol Biol 2018 ;1775:229-239

United States Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.

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February 2019

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

Authors:
Sean P Gordon Bruno Contreras-Moreira Daniel P Woods David L Des Marais Diane Burgess Shengqiang Shu Christoph Stritt Anne C Roulin Wendy Schackwitz Ludmila Tyler Joel Martin Anna Lipzen Niklas Dochy Jeremy Phillips Kerrie Barry Koen Geuten Hikmet Budak Thomas E Juenger Richard Amasino Ana L Caicedo David Goodstein Patrick Davidson Luis A J Mur Melania Figueroa Michael Freeling Pilar Catalan John P Vogel

Nat Commun 2017 12 19;8(1):2184. Epub 2017 Dec 19.

DOE Joint Genome Institute, Walnut Creek, CA, 94598, USA.

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December 2017

Population genomics of picophytoplankton unveils novel chromosome hypervariability.

Authors:
Romain Blanc-Mathieu Marc Krasovec Maxime Hebrard Sheree Yau Elodie Desgranges Joel Martin Wendy Schackwitz Alan Kuo Gerald Salin Cecile Donnadieu Yves Desdevises Sophie Sanchez-Ferandin Hervé Moreau Eric Rivals Igor V Grigoriev Nigel Grimsley Adam Eyre-Walker Gwenael Piganeau

Sci Adv 2017 07 5;3(7):e1700239. Epub 2017 Jul 5.

CNRS, Biologie Intégrative des Organismes Marins (BIOM), Observatoire Océanologique, F-66650 Banyuls-sur-Mer, France.

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July 2017

The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.

Authors:
Guotian Li Rashmi Jain Mawsheng Chern Nikki T Pham Joel A Martin Tong Wei Wendy S Schackwitz Anna M Lipzen Phat Q Duong Kyle C Jones Liangrong Jiang Deling Ruan Diane Bauer Yi Peng Kerrie W Barry Jeremy Schmutz Pamela C Ronald

Plant Cell 2017 Jun 2;29(6):1218-1231. Epub 2017 Jun 2.

Department of Plant Pathology and the Genome Center, University of California, Davis, California 95616

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June 2017

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Authors:
Luis M Corrochano Alan Kuo Marina Marcet-Houben Silvia Polaino Asaf Salamov José M Villalobos-Escobedo Jane Grimwood M Isabel Álvarez Javier Avalos Diane Bauer Ernesto P Benito Isabelle Benoit Gertraud Burger Lola P Camino David Cánovas Enrique Cerdá-Olmedo Jan-Fang Cheng Angel Domínguez Marek Eliáš Arturo P Eslava Fabian Glaser Gabriel Gutiérrez Joseph Heitman Bernard Henrissat Enrique A Iturriaga B Franz Lang José L Lavín Soo Chan Lee Wenjun Li Erika Lindquist Sergio López-García Eva M Luque Ana T Marcos Joel Martin Kevin McCluskey Humberto R Medina Alejandro Miralles-Durán Atsushi Miyazaki Elisa Muñoz-Torres José A Oguiza Robin A Ohm María Olmedo Margarita Orejas Lucila Ortiz-Castellanos Antonio G Pisabarro Julio Rodríguez-Romero José Ruiz-Herrera Rosa Ruiz-Vázquez Catalina Sanz Wendy Schackwitz Mahdi Shahriari Ekaterina Shelest Fátima Silva-Franco Darren Soanes Khajamohiddin Syed Víctor G Tagua Nicholas J Talbot Michael R Thon Hope Tice Ronald P de Vries Ad Wiebenga Jagjit S Yadav Edward L Braun Scott E Baker Victoriano Garre Jeremy Schmutz Benjamin A Horwitz Santiago Torres-Martínez Alexander Idnurm Alfredo Herrera-Estrella Toni Gabaldón Igor V Grigoriev

Curr Biol 2016 06 26;26(12):1577-1584. Epub 2016 May 26.

US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

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June 2016

Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation.

Authors:
Guotian Li Mawsheng Chern Rashmi Jain Joel A Martin Wendy S Schackwitz Liangrong Jiang Miguel E Vega-Sánchez Anna M Lipzen Kerrie W Barry Jeremy Schmutz Pamela C Ronald

Mol Plant 2016 07 24;9(7):1078-81. Epub 2016 Mar 24.

Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616, USA; Feedstocks Division, Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address:

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July 2016

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.

Authors:
Matthew L Bendall Sarah Lr Stevens Leong-Keat Chan Stephanie Malfatti Patrick Schwientek Julien Tremblay Wendy Schackwitz Joel Martin Amrita Pati Brian Bushnell Jeff Froula Dongwan Kang Susannah G Tringe Stefan Bertilsson Mary A Moran Ashley Shade Ryan J Newton Katherine D McMahon Rex R Malmstrom

ISME J 2016 07 8;10(7):1589-601. Epub 2016 Jan 8.

DOE Joint Genome Institute, Walnut Creek, CA, USA.

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July 2016

Expanding the Limits of Thermoacidophily in the Archaeon Sulfolobus solfataricus by Adaptive Evolution.

Authors:
Samuel McCarthy Tyler Johnson Benjamin J Pavlik Sophie Payne Wendy Schackwitz Joel Martin Anna Lipzen Erica Keffeler Paul Blum

Appl Environ Microbiol 2016 02 20;82(3):857-67. Epub 2015 Nov 20.

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA Department of Chemical and Biomolecular Engineering, University of Nebraska-Lincoln, Lincoln, Nebraska, USA

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February 2016

Complete Genome Sequences of Evolved Arsenate-Resistant Metallosphaera sedula Strains.

Authors:
Chenbing Ai Samuel McCarthy Wendy Schackwitz Joel Martin Anna Lipzen Paul Blum

Genome Announc 2015 Oct 1;3(5). Epub 2015 Oct 1.

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA

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October 2015

Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype.

Authors:
Alexander Lichius Frédérique Bidard Franziska Buchholz Stéphane Le Crom Joel Martin Wendy Schackwitz Tina Austerlitz Igor V Grigoriev Scott E Baker Antoine Margeot Bernhard Seiboth Christian P Kubicek

BMC Genomics 2015 Sep 22;16(1):725. Epub 2015 Sep 22.

Research Division Biotechnology and Microbiology, Institute of Chemical Engineering, Vienna University of Technology, A-1060, Vienna, Austria.

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September 2015

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

Authors:
Millie T Olsen Shane Nowack Jason M Wood Eric D Becraft Kurt LaButti Anna Lipzen Joel Martin Wendy S Schackwitz Douglas B Rusch Frederick M Cohan Donald A Bryant David M Ward

Front Microbiol 2015 23;6:604. Epub 2015 Jun 23.

Department of Land Resources and Environmental Sciences, Montana State University Bozeman, MT, USA.

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July 2015

Complete Genome Sequence of an Evolved Thermotoga maritima Isolate.

Authors:
Raghuveer Singh Julien Gradnigo Derrick White Anna Lipzen Joel Martin Wendy Schackwitz Etsuko Moriyama Paul Blum

Genome Announc 2015 May 28;3(3). Epub 2015 May 28.

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA

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May 2015

Complete Genome Sequence of Sulfolobus solfataricus Strain 98/2 and Evolved Derivatives.

Authors:
Samuel McCarthy Julien Gradnigo Tyler Johnson Sophie Payne Anna Lipzen Joel Martin Wendy Schackwitz Etsuko Moriyama Paul Blum

Genome Announc 2015 May 28;3(3). Epub 2015 May 28.

School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA

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May 2015

Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC.

Authors:
Victor Chubukov Florence Mingardon Wendy Schackwitz Edward E K Baidoo Jorge Alonso-Gutierrez Qijun Hu Taek Soon Lee Jay D Keasling Aindrila Mukhopadhyay

Appl Environ Microbiol 2015 Jul 1;81(14):4690-6. Epub 2015 May 1.

Joint BioEnergy Institute, Emeryville, California, USA Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA

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July 2015