Weisheng Wu

Weisheng Wu

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Weisheng Wu

Weisheng Wu

Publications by authors named "Weisheng Wu"

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Bioinformatics Analysis of Whole Exome Sequencing Data.

Methods Mol Biol 2019 ;1881:277-318

BRCF Bioinformatics Core, University of Michigan, Ann Arbor, MI, USA.

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http://dx.doi.org/10.1007/978-1-4939-8876-1_21DOI Listing
January 2019

Novel Transcriptional Activity and Extensive Allelic Imbalance in the Human MHC Region.

J Immunol 2018 02 8;200(4):1496-1503. Epub 2018 Jan 8.

Division of Rheumatology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI 48109;

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http://dx.doi.org/10.4049/jimmunol.1701061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823012PMC
February 2018

TnseqDiff: identification of conditionally essential genes in transposon sequencing studies.

BMC Bioinformatics 2017 Jul 6;18(1):326. Epub 2017 Jul 6.

Department of Pathology, School of medicine, University of Michigan, Ann Arbor, USA.

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http://dx.doi.org/10.1186/s12859-017-1745-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5500955PMC
July 2017

Molecular Epidemiology of Colonizing and Infecting Isolates of .

mSphere 2016 Sep-Oct;1(5). Epub 2016 Oct 19.

Department of Pathology, University of Michigan Medical School, Ann Arbor, Michigan, USA.

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http://dx.doi.org/10.1128/mSphere.00261-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5071533PMC
October 2016

Genome-Wide Identification of Klebsiella pneumoniae Fitness Genes during Lung Infection.

MBio 2015 Jun 9;6(3):e00775. Epub 2015 Jun 9.

Department of Microbiology and Immunology, School of Medicine, University of Michigan, Ann Arbor, Michigan, USA.

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http://dx.doi.org/10.1128/mBio.00775-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462621PMC
June 2015

Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility.

Epigenetics Chromatin 2015 23;8:16. Epub 2015 Apr 23.

Center for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, 304 Wartik Laboratory, University Park, PA 16802 USA.

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http://dx.doi.org/10.1186/s13072-015-0009-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432502PMC
May 2015

Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis.

Genome Res 2014 Dec 15;24(12):1945-62. Epub 2014 Oct 15.

Center for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA;

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http://dx.doi.org/10.1101/gr.164830.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248312PMC
December 2014

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1038/nature13992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266106PMC
November 2014

CD1d-unrestricted NKT cells are endowed with a hybrid function far superior than that of iNKT cells.

Proc Natl Acad Sci U S A 2014 Sep 20;111(35):12841-6. Epub 2014 Aug 20.

Departments of Microbiology and Immunology and

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http://dx.doi.org/10.1073/pnas.1323405111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4156687PMC
September 2014

An encyclopedia of mouse DNA elements (Mouse ENCODE).

August 2012

Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.

Nucleic Acids Res 2009 Nov;37(21):7024-38

Center for Comparative Genomics and Bioinformatics, Huck Institutes of Life Sciences.

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http://dx.doi.org/10.1093/nar/gkp747DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790884PMC
November 2009

Molecular cloning and characterization of 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate reductase gene from Ginkgo biloba.

Mol Biol Rep 2008 Sep 26;35(3):413-20. Epub 2007 May 26.

State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Morgan-Tan International Center for Life Sciences, Fudan University, Shanghai, China.

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http://dx.doi.org/10.1007/s11033-007-9101-7DOI Listing
September 2008

A GATA-1-regulated microRNA locus essential for erythropoiesis.

Proc Natl Acad Sci U S A 2008 Mar 26;105(9):3333-8. Epub 2008 Feb 26.

Division of Hematology, Children's Hospital of Philadelphia and The University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1073/pnas.0712312105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2265118PMC
March 2008

cDNA cloning and expression analysis of a mannose-binding lectin from Pinellia pedatisecta.

J Biosci 2007 Mar;32(2):241-9

State Key Laboratory of Genetic Engineering, Fudan-SJTU-Nottingham Plant Biotechnology R and D Center, School of Life Sciences, Morgan-Tan International Center for Life Sciences, Fudan University, Shanghai 200433, People's Republic of China.

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March 2007

Authentication of Pinellia ternata and its adulterants based on PCR with specific primers.

Planta Med 2006 Jul 29;72(9):844-7. Epub 2006 May 29.

State Key Laboratory of Genetic Engineering, School of Life Sciences, Morgan-Tan International Center for Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Fudan University, Shanghai, P. R. China.

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http://dx.doi.org/10.1055/s-2006-931605DOI Listing
July 2006

Cloning and characterization of a root-specific expressing gene encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase from Ginkgo biloba.

Mol Biol Rep 2006 Jun;33(2):117-27

Plant Biotechnology Research Center, Shanghai Key Laboratory of Biotechnology, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Institute of Systems Biology, Shanghai Jiao Tong University, Shanghai 200030, China.

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http://dx.doi.org/10.1007/s11033-006-0014-7DOI Listing
June 2006

Molecular cloning and characterization of a novel dehydrin gene from Ginkgo biloba.

Biosci Rep 2006 Jun;26(3):203-15

State Key Laboratory of Genetic Engineering, School of Life Sciences, Morgan-Tan International Center for Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Fudan University, Shanghai, 200433, China.

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http://link.springer.com/content/pdf/10.1007/s10540-006-9016
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http://bioscirep.org/cgi/doi/10.1007/s10540-006-9016-x
Publisher Site
http://dx.doi.org/10.1007/s10540-006-9016-xDOI Listing
June 2006

Isolation and characterization of the first putative peroxidase gene from oilseed rape (Brassica napus) which is highly homologous to HRPC.

Biosci Rep 2006 Jun;26(3):263-80

State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Morgan-Tan International Center for Life Sciences, Fudan University, Shanghai , 200433, China.

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http://dx.doi.org/10.1007/s10540-006-9021-0DOI Listing
June 2006

Molecular cloning, characterization and expression of a novel trehalose-6-phosphate synthase homologue from Ginkgo biloba.

J Biochem Mol Biol 2006 Mar;39(2):158-66

State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Fudan University, Shanghai 200433, China.

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March 2006

Isolation and characterization of a putative anthocyanidin reductase gene from Ginkgo biloba.

J Plant Physiol 2006 Feb 1;163(2):224-7. Epub 2005 Sep 1.

Plant Biotechnology Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200030, PR China.

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http://linkinghub.elsevier.com/retrieve/pii/S017616170500223
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http://dx.doi.org/10.1016/j.jplph.2005.06.012DOI Listing
February 2006

Cloning and characterization of a flavanone 3-hydroxylase gene from Ginkgo biloba.

Biosci Rep 2006 Feb;26(1):19-29

Shanghai Key Laboratory of Biotechnology, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 200030 Shanghai, People's Republic of China.

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http://dx.doi.org/10.1007/s10540-006-9007-yDOI Listing
February 2006

Molecular cloning, characterization and expression of a novel jasmonate-dependent defensin gene from Ginkgo biloba.

J Plant Physiol 2005 Oct;162(10):1160-8

Plant Biotechnology Research Center, School of Agriculture and Biology, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, SJTU-SIBS-PSU Joint Center for Life Sciences, Shanghai Jiao Tong University, PR China.

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http://dx.doi.org/10.1016/j.jplph.2005.01.019DOI Listing
October 2005

Molecular cloning, characterization and expression of a novel Asr gene from Ginkgo biloba.

Plant Physiol Biochem 2005 Sep 19;43(9):836-43. Epub 2005 Oct 19.

Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200030, China.

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http://dx.doi.org/10.1016/j.plaphy.2005.06.010DOI Listing
September 2005

Isolation and characterization of a serine/threonine protein kinase SOS2 gene from Brassica napus.

Cell Mol Biol Lett 2004 ;9(3):465-73

School of Life Sciences, Morgan-Tan International Center for Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology RD Center, Fudan University, Shanghai 200433, China.

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February 2005

Molecular cloning and characterization of a new Na+/H+ antiporter gene from Brassica napus.

DNA Seq 2003 Oct;14(5):351-8

State Key Laboratory of Genetic Engineering, School of Life Sciences, Morgan-Tan International Center for Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Fudan University, Shanghai 200433, People's Republic of China.

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October 2003