Wataru Iwasaki

Wataru Iwasaki

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Wataru Iwasaki

Wataru Iwasaki

Publications by authors named "Wataru Iwasaki"

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71Publications

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Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction.

Syst Biol 2020 Mar;69(2):265-279

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1093/sysbio/syz049DOI Listing
March 2020

Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume-rhizobia symbiosis.

J Plant Res 2020 Jan 11;133(1):109-122. Epub 2019 Dec 11.

Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi, 444 8585, Japan.

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http://dx.doi.org/10.1007/s10265-019-01159-xDOI Listing
January 2020

Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8.

PLoS One 2019 14;14(3):e0213535. Epub 2019 Mar 14.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwa-no-ha, Kashiwa, Chiba, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0213535PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417678PMC
December 2019

Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales.

Fungal Genet Biol 2019 Sep 23;130:31-42. Epub 2019 Apr 23.

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8568, Japan; Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba 277-8564, Japan; Institute for Quantitative Biosciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan; Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.fgb.2019.04.013DOI Listing
September 2019

A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios.

Mol Biol Evol 2019 09;36(9):2069-2085

Unité Bioinformatique Evolutive, Institut Pasteur, C3BI USR 3756 IP & CNRS, Paris, France.

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http://dx.doi.org/10.1093/molbev/msz131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735705PMC
September 2019

Functional D-box sequences reset the circadian clock and drive mRNA rhythms.

Commun Biol 2019 8;2:300. Epub 2019 Aug 8.

1Department of Biological Sciences, School of Science, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku Tokyo, 113-0033 Japan.

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http://dx.doi.org/10.1038/s42003-019-0522-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687812PMC
August 2019

Genome and transcriptome evolve separately in recently hybridized fungi.

Commun Biol 2019 19;2:263. Epub 2019 Jul 19.

1Department of Biological Sciences, Graduate School of Science, the University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032 Japan.

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http://dx.doi.org/10.1038/s42003-019-0515-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6642101PMC
July 2019

SonicParanoid: fast, accurate and easy orthology inference.

Bioinformatics 2019 01;35(1):149-151

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1093/bioinformatics/bty631DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298048PMC
January 2019

Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.

Nat Commun 2019 01 11;10(1):159. Epub 2019 Jan 11.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8568, Japan.

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http://www.nature.com/articles/s41467-018-08103-y
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http://dx.doi.org/10.1038/s41467-018-08103-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329791PMC
January 2019

Simple separation of good quality bovine oocytes using a microfluidic device.

Sci Rep 2018 09 24;8(1):14273. Epub 2018 Sep 24.

Advanced Manufacturing Research Institute, National Institute of Advanced Industrial Science and Technology, 807-1 Shuku-machi, Tosu, Saga, 841-0052, Japan.

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http://www.nature.com/articles/s41598-018-32687-6
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http://dx.doi.org/10.1038/s41598-018-32687-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6155318PMC
September 2018

MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding.

Mol Biol Evol 2018 06;35(6):1553-1555

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.

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http://dx.doi.org/10.1093/molbev/msy074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5967551PMC
June 2018

Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre.

ISME J 2018 04 23;12(4):1047-1060. Epub 2018 Feb 23.

Daniel K. Inouye Center for Microbial Oceanography: Research and Education, Department of Oceanography, University of Hawaii, Honolulu, HI, 96822, USA.

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http://dx.doi.org/10.1038/s41396-018-0074-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5864233PMC
April 2018

Correlation between Electronic Shell Structure and Inertness of Cu toward O Adsorption at n = 15, 21, 41, and 49.

J Phys Chem A 2018 Mar 13;122(11):2927-2932. Epub 2018 Mar 13.

Department of Chemistry, Graduate School of Science , Tohoku University , 6-3 Aoba, Aramaki , Aoba-ku, Sendai 980-8578 , Japan.

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http://dx.doi.org/10.1021/acs.jpca.8b00246DOI Listing
March 2018

A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved 'natural' hybrid genomes.

Yeast 2018 01 6;35(1):99-111. Epub 2017 Dec 6.

Department of Biological Sciences, Graduate School of Science, the University of Tokyo, Bunkyo-ku, Tokyo, 113-0032, Japan.

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http://dx.doi.org/10.1002/yea.3284DOI Listing
January 2018

A sodium binding system alleviates acute salt stress during seawater acclimation in eels.

Zoological Lett 2017 12;3:22. Epub 2017 Dec 12.

Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa City, Japan.

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http://dx.doi.org/10.1186/s40851-017-0081-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727781PMC
December 2017

Generalist species drive microbial dispersion and evolution.

Nat Commun 2017 10 27;8(1):1162. Epub 2017 Oct 27.

Department of Biological Sciences, Graduate School of Science, the University of Tokyo, Bunkyo-ku, Tokyo, 113-0032, Japan.

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http://dx.doi.org/10.1038/s41467-017-01265-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660117PMC
October 2017

Seasonal Analysis of Microbial Communities in Precipitation in the Greater Tokyo Area, Japan.

Front Microbiol 2017 11;8:1506. Epub 2017 Aug 11.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of TokyoChiba, Japan.

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http://dx.doi.org/10.3389/fmicb.2017.01506DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5554504PMC
August 2017

Molecular mechanisms underlying active desalination and low water permeability in the esophagus of eels acclimated to seawater.

Am J Physiol Regul Integr Comp Physiol 2017 02 21;312(2):R231-R244. Epub 2016 Dec 21.

Laboratory of Physiology, Atmosphere and Ocean Research Institute, University of Tokyo, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1152/ajpregu.00465.2016DOI Listing
February 2017

ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm.

Nat Genet 2017 01 28;49(1):146-151. Epub 2016 Nov 28.

Department of Biological Sciences, School of Science, The University of Tokyo, Tokyo, Japan.

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http://www.nature.com/articles/ng.3731
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http://dx.doi.org/10.1038/ng.3731DOI Listing
January 2017

Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants.

BMC Bioinformatics 2017 Jan 19;18(1):46. Epub 2017 Jan 19.

Department of Computational Biology and Medical Science, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-8568, Japan.

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http://dx.doi.org/10.1186/s12859-016-1408-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244558PMC
January 2017

Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.

Microbes Environ 2016 Sep 5;31(3):204-12. Epub 2016 Jul 5.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo.

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http://dx.doi.org/10.1264/jsme2.ME16024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5017796PMC
September 2016

MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-Seq data.

Comput Biol Chem 2016 08 13;63:62-72. Epub 2016 Feb 13.

Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, 277-8568 Chiba, Japan; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, 113-0032 Tokyo, Japan; Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, 277-8564 Chiba, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.compbiolchem.2016.01.014DOI Listing
August 2016

Global deceleration of gene evolution following recent genome hybridizations in fungi.

Genome Res 2016 08 20;26(8):1081-90. Epub 2016 Jul 20.

Department of Biological Sciences, Graduate School of Science, University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba 277-8568, Japan; Atmosphere and Ocean Research Institute, University of Tokyo, Kashiwa, Chiba 277-8564, Japan.

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http://dx.doi.org/10.1101/gr.205948.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971771PMC
August 2016

Flexible selection of diversified Na(+)/K(+)-ATPase α-subunit isoforms for osmoregulation in teleosts.

Zoological Lett 2016 3;2:15. Epub 2016 Aug 3.

Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba Japan.

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http://dx.doi.org/10.1186/s40851-016-0050-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971688PMC
August 2016

Influence of Contact Force on Electrochemical Responses of Redox Species Flowing in Nitrocellulose Membrane at Micropyramid Array Electrode.

Anal Sci 2015 ;31(7):729-32

Advanced Manufacturing Research Institute, National Institute of Advanced Industrial Science and Technology.

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http://dx.doi.org/10.2116/analsci.31.729DOI Listing
April 2016

Parallel Mitogenome Sequencing Alleviates Random Rooting Effect in Phylogeography.

Genome Biol Evol 2016 Apr 28;8(4):1267-78. Epub 2016 Apr 28.

Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan

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http://dx.doi.org/10.1093/gbe/evw063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860695PMC
April 2016

Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake tsunami.

BMC Genomics 2016 Jan 14;17:53. Epub 2016 Jan 14.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Chiba, 277-8568, Japan.

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http://dx.doi.org/10.1186/s12864-016-2380-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4712596PMC
January 2016

Detection of Site-Specific Blood Flow Variation in Humans during Running by a Wearable Laser Doppler Flowmeter.

Sensors (Basel) 2015 Oct 5;15(10):25507-19. Epub 2015 Oct 5.

Department of Mechanical Engineering, Faculty of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.

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http://dx.doi.org/10.3390/s151025507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4634506PMC
October 2015

GroupTracker: Video tracking system for multiple animals under severe occlusion.

Comput Biol Chem 2015 Aug 18;57:39-45. Epub 2015 Feb 18.

Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, 277-8568 Chiba, Japan; Atmosphere and Ocean Research Institute, The University of Tokyo, 277-8564 Chiba, Japan; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 113-0032 Tokyo, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.compbiolchem.2015.02.006DOI Listing
August 2015

Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb.

Cell Rep 2015 Jul 9;12(3):429-40. Epub 2015 Jul 9.

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-0032, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.06.035DOI Listing
July 2015

Tepidicaulis marinus gen. nov., sp. nov., a marine bacterium that reduces nitrate to nitrous oxide under strictly microaerobic conditions.

Int J Syst Evol Microbiol 2015 Jun 4;65(Pt 6):1749-54. Epub 2015 Mar 4.

1Institute for Geo-resources and Environments, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8567, Japan.

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http://dx.doi.org/10.1099/ijs.0.000167DOI Listing
June 2015

Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach.

BMC Genomics 2014 Dec 18;15:1134. Epub 2014 Dec 18.

Atmosphere and Ocean Research Institute, The University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2164-15-1134DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4377849PMC
December 2014

MetaMetaDB: a database and analytic system for investigating microbial habitability.

PLoS One 2014 27;9(1):e87126. Epub 2014 Jan 27.

Atmosphere and Ocean Research Institute, the University of Tokyo, Kashiwa, Chiba, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0087126PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3903645PMC
September 2014

Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum.

Int J Syst Evol Microbiol 2014 Sep 30;64(Pt 9):3240-6. Epub 2014 Jun 30.

Institute for Geo-resources and Environments, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8567, Japan.

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http://dx.doi.org/10.1099/ijs.0.063503-0DOI Listing
September 2014

The spirit of competition: to win or not to win.

PLoS Comput Biol 2013 26;9(12):e1003413. Epub 2013 Dec 26.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America ; VIB Department of Plant Systems Biology, Ghent University, Belgium.

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http://dx.doi.org/10.1371/journal.pcbi.1003413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873224PMC
August 2014

Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes.

BMC Genomics 2014 Aug 29;15:735. Epub 2014 Aug 29.

Center for Earth Surface System Dynamics, Atmosphere and Ocean Research Institute, the University of Tokyo, Kashiwa, Chiba 277-8564, Japan.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-15-735DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4159527PMC
August 2014

CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes.

Mol Cell Biol 2014 May 3;34(10):1776-87. Epub 2014 Mar 3.

Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1128/MCB.01465-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019033PMC
May 2014

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.

Proc Natl Acad Sci U S A 2014 May 31;111(18):6732-7. Epub 2014 Mar 31.

Atmosphere and Ocean Research Institute, University of Tokyo, Chiba 277-8564 Japan.

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http://dx.doi.org/10.1073/pnas.1403051111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4020065PMC
May 2014

Complete Genome Sequence of Winogradskyella sp. Strain PG-2, a Proteorhodopsin-Containing Marine Flavobacterium.

Genome Announc 2014 May 29;2(3). Epub 2014 May 29.

Department of Computational Biology, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1128/genomeA.00490-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4038882PMC
May 2014

Crossing borders for science.

PLoS Comput Biol 2014 Mar 27;10(3):e1003519. Epub 2014 Mar 27.

Computational Cancer Biology, Netherlands Cancer Institute, Amsterdam, Netherlands.

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http://dx.doi.org/10.1371/journal.pcbi.1003519DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967919PMC
March 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

From β- to α-proteobacteria: the origin and evolution of rhizobial nodulation genes nodIJ.

Mol Biol Evol 2013 Nov 11;30(11):2494-508. Epub 2013 Sep 11.

Department of General Systems Studies, Graduate School of Arts and Sciences, the University of Tokyo, Meguro-ku, Tokyo, Japan.

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http://dx.doi.org/10.1093/molbev/mst153DOI Listing
November 2013

Development of a wireless sensor for the measurement of chicken blood flow using the laser Doppler blood flow meter technique.

IEEE Trans Biomed Eng 2013 Jun 25;60(6):1645-53. Epub 2013 Jan 25.

Graduate School of Systems Life Science, Kyushu University, Fukuoka 812-8581, Japan.

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http://dx.doi.org/10.1109/TBME.2013.2241062DOI Listing
June 2013

Transfection of naked nuclear factor-κB decoy oligodeoxynucleotides into liver by rapid portal vein infusion in rats: its effect on ischemia-reperfusion injury of liver.

Hum Gene Ther 2012 Apr 10;23(4):428-36. Epub 2012 Apr 10.

Department of Gastroenterological Surgery, Akita University Graduate School of Medicine, Akita 010-8543, Japan.

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http://dx.doi.org/10.1089/hum.2011.151DOI Listing
April 2012

Interactive, multiscale navigation of large and complicated biological networks.

Bioinformatics 2011 Apr 23;27(8):1121-7. Epub 2011 Feb 23.

Department of Computational Biology, The University of Tokyo, Kashiwa, Chiba 277-8568, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btr083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072549PMC
April 2011

Generalized centroid estimators in bioinformatics.

PLoS One 2011 Feb 18;6(2):e16450. Epub 2011 Feb 18.

Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016450PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041832PMC
February 2011

TogoDoc server/client system: smart recommendation and efficient management of life science literature.

PLoS One 2010 Dec 13;5(12):e15305. Epub 2010 Dec 13.

Department of Computational Biology, University of Tokyo, Kashiwa, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0015305PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001491PMC
December 2010

An intuitive, informative, and most balanced representation of phylogenetic topologies.

Syst Biol 2010 Oct 3;59(5):584-93. Epub 2010 Sep 3.

Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8568, Japan.

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http://dx.doi.org/10.1093/sysbio/syq044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2950835PMC
October 2010

Rapid pathway evolution facilitated by horizontal gene transfers across prokaryotic lineages.

PLoS Genet 2009 Mar 6;5(3):e1000402. Epub 2009 Mar 6.

Department of Computational Biology, University of Tokyo, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1371/journal.pgen.1000402DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2644373PMC
March 2009

The use of magnetic anchors in the bowel lumen for laparoscopic anterior resection of rectosigmoid colon in pigs: with video.

World J Surg 2008 Nov;32(11):2425-8

Department of Gastroenterological Surgery, Akita University School of Medicine, 1-1-1 Hondo, Akita, 010-8543, Japan.

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http://link.springer.com/10.1007/s00268-008-9728-0
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http://dx.doi.org/10.1007/s00268-008-9728-0DOI Listing
November 2008

A newly designed magnet-retracting forceps for laparoscopic cholecystectomy in a swine model.

Minim Invasive Ther Allied Technol 2008 ;17(4):251-4

Department of Gastroenterological Surgery, Akita University School of Medicine, Akita, Japan.

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http://www.tandfonline.com/doi/full/10.1080/1364570080227468
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http://dx.doi.org/10.1080/13645700802274687DOI Listing
October 2008

Reconstruction of highly heterogeneous gene-content evolution across the three domains of life.

Bioinformatics 2007 Jul;23(13):i230-9

Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8568, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btm165DOI Listing
July 2007

Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase.

J Mol Biol 2006 Jul 15;360(2):329-42. Epub 2006 May 15.

Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.

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http://dx.doi.org/10.1016/j.jmb.2006.04.068DOI Listing
July 2006